ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd19c05 |
|---|---|
| Clone Library Name | barley_pub |
>YR705_MIMIV (Q5UNW3) Hypothetical protein R705| Length = 313 Score = 31.2 bits (69), Expect = 2.4 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 1/99 (1%) Frame = -3 Query: 419 ARARATKRRQGFAGKGQGLSVLRREEGAYSRHAGSCSRA-GYATVRTRREERNDAERNGS 243 + AR+T R + S R G+ S + + SR+ G T R+ R+ + +GS Sbjct: 205 SNARSTSSRSSGSRSSGSRSSGSRSSGSRSTGSKTSSRSSGSKTSRSSGSSRSRSGSSGS 264 Query: 242 RLIACFASSGGTVANLGHERAGRHGGIPA*GSRRREGKR 126 + S GT + R+G G + S R G R Sbjct: 265 KSGRSRNSRSGTSGRSSNSRSGSRSGSSSRSSNSRSGSR 303
>CT054_MOUSE (Q9D6X5) Protein C20orf54 homolog precursor| Length = 460 Score = 30.4 bits (67), Expect = 4.1 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = +3 Query: 402 GRSSSGVLPPTVL*LYSPGGAPGSFISVSGGRASSTCTVPSFRLSLPPYIPLPAWHR 572 G SG+LP V + G ++ + G +T P + +L P +P P+WH+ Sbjct: 144 GEGLSGLLPALVALVQGSGITTCVNVTETPGTTLNTMETPITQGNLSPSLPSPSWHQ 200
>ICEN_PSESY (P06620) Ice nucleation protein| Length = 1200 Score = 30.0 bits (66), Expect = 5.4 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 6/84 (7%) Frame = -3 Query: 320 GSCSRAGYATVRTRREERNDAERNGSRLIACFASSG------GTVANLGHERAGRHGGIP 159 GS AG+ ++ T R+GS LIA + S+G +A G + + + Sbjct: 627 GSTQTAGHKSILTAGYGSTQTARDGSDLIAGYGSTGTAGSGSSLIAGYGSTQTASYRSML 686 Query: 158 A*GSRRREGKREHLDARQSHARTS 87 G + REH D + TS Sbjct: 687 TAGYGSTQTAREHSDLVTGYGSTS 710
>ICEK_PSESX (O30611) Ice nucleation protein| Length = 1148 Score = 30.0 bits (66), Expect = 5.4 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 6/84 (7%) Frame = -3 Query: 320 GSCSRAGYATVRTRREERNDAERNGSRLIACFASSG------GTVANLGHERAGRHGGIP 159 GS AG+ ++ T R+GS LIA + S+G +A G + + + Sbjct: 575 GSTQTAGHKSILTAGYGSTQTARDGSYLIAGYGSTGTAGSGSSLIAGYGSTQTASYRSML 634 Query: 158 A*GSRRREGKREHLDARQSHARTS 87 G + REH D + TS Sbjct: 635 TAGYGSTQTAREHSDLVTGYGSTS 658
>HORN_MOUSE (Q8VHD8) Hornerin| Length = 2496 Score = 30.0 bits (66), Expect = 5.4 Identities = 27/88 (30%), Positives = 42/88 (47%) Frame = -3 Query: 383 AGKGQGLSVLRREEGAYSRHAGSCSRAGYATVRTRREERNDAERNGSRLIACFASSGGTV 204 +G G G S E+G+ SR++ + SR R+ E + ++R GS SSG + Sbjct: 1453 SGCGSGQSTRYGEQGSGSRNSSTQSRG-----RSTSRESSTSQRFGS---GSGGSSGFSQ 1504 Query: 203 ANLGHERAGRHGGIPA*GSRRREGKREH 120 G R+ R GG S + EG ++H Sbjct: 1505 GRSGQGRSSR-GGQQGSFSGQTEGSQQH 1531 Score = 30.0 bits (66), Expect = 5.4 Identities = 27/88 (30%), Positives = 42/88 (47%) Frame = -3 Query: 383 AGKGQGLSVLRREEGAYSRHAGSCSRAGYATVRTRREERNDAERNGSRLIACFASSGGTV 204 +G G G S E+G+ SR++ + SR R+ E + ++R GS SSG + Sbjct: 1105 SGCGSGQSTRYGEQGSGSRNSSTQSRG-----RSTSRESSTSQRFGS---GSGGSSGFSQ 1156 Query: 203 ANLGHERAGRHGGIPA*GSRRREGKREH 120 G R+ R GG S + EG ++H Sbjct: 1157 GRSGQGRSSR-GGQQGSFSGQTEGSQQH 1183 Score = 30.0 bits (66), Expect = 5.4 Identities = 27/88 (30%), Positives = 42/88 (47%) Frame = -3 Query: 383 AGKGQGLSVLRREEGAYSRHAGSCSRAGYATVRTRREERNDAERNGSRLIACFASSGGTV 204 +G G G S E+G+ SR++ + SR R+ E + ++R GS SSG + Sbjct: 756 SGCGSGQSTRYGEQGSGSRNSSTQSRG-----RSTSRESSTSQRFGS---GSGGSSGFSQ 807 Query: 203 ANLGHERAGRHGGIPA*GSRRREGKREH 120 G R+ R GG S + EG ++H Sbjct: 808 GRSGQGRSSR-GGQQGSFSGQTEGSQQH 834
>MYO9B_MOUSE (Q9QY06) Myosin-9B (Myosin IXb) (Unconventional myosin-9b)| Length = 2114 Score = 29.6 bits (65), Expect = 7.0 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Frame = +3 Query: 387 PLPPFGRSSSGVLPPTVL*LYSPGGAPGSFISVSGGRASSTCTVPSFRLSLPPYIP--LP 560 P P S L P P G P SF++V T +P + LPP +P L Sbjct: 1979 PAPALPCPISPTLSPLPEAAAPPRGRPTSFVTVRVKTPRRTPIMPMANIKLPPGLPLHLT 2038 Query: 561 AWHRAGQE 584 +W A QE Sbjct: 2039 SWAPALQE 2046
>ICEV_PSESX (O33479) Ice nucleation protein| Length = 1196 Score = 29.6 bits (65), Expect = 7.0 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 6/84 (7%) Frame = -3 Query: 320 GSCSRAGYATVRTRREERNDAERNGSRLIACFASSG------GTVANLGHERAGRHGGIP 159 GS AG+ ++ T R+GS L+A + S+G +A G + + + Sbjct: 623 GSTQTAGHKSILTAGYGSTQTARDGSDLVAGYGSTGTAGSGSSLIAGYGSTQTASYKSML 682 Query: 158 A*GSRRREGKREHLDARQSHARTS 87 G + REH D + TS Sbjct: 683 TAGYGSTQTAREHSDLVAGYGSTS 706
>ENAH_MOUSE (Q03173) Protein enabled homolog (NPC-derived proline-rich protein| 1) (NDPP-1) Length = 802 Score = 29.6 bits (65), Expect = 7.0 Identities = 15/56 (26%), Positives = 26/56 (46%) Frame = -1 Query: 565 QAGSGIYGGRERRKEGTVQVLDARPPETEMKEPGAPPGEYSYSTVGGSTPELERPK 398 + GS I ++ + + + A+ P T EP P E + + G +P + RPK Sbjct: 692 EKGSTIETEQKEDRNEDAEPITAKAPSTSTPEPTRKPWERTNTMNGSKSPVISRPK 747
>STRC_MOUSE (Q8VIM6) Stereocilin precursor| Length = 1809 Score = 29.6 bits (65), Expect = 7.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +2 Query: 341 PPPSSKRSNLVPFPQTPAAFW 403 PPP+S L+P P TP FW Sbjct: 490 PPPTSCPPGLIPVPLTPEIFW 510
>HSP1_SMILO (Q9TUC2) Sperm protamine P1| Length = 61 Score = 29.6 bits (65), Expect = 7.0 Identities = 24/85 (28%), Positives = 32/85 (37%) Frame = -3 Query: 335 YSRHAGSCSRAGYATVRTRREERNDAERNGSRLIACFASSGGTVANLGHERAGRHGGIPA 156 Y RH+ S SR+ Y R RR ++ R + R+ RH Sbjct: 3 YRRHSRSRSRSRYRRRRRRRSRHHNRRRT-------------------YRRSRRH----- 38 Query: 155 *GSRRREGKREHLDARQSHARTSRY 81 SRRR G+R R+ R RY Sbjct: 39 --SRRRRGRRRGYSRRRYSRRRRRY 61
>SALL3_HUMAN (Q9BXA9) Sal-like protein 3 (Zinc finger protein SALL3) (hSALL3)| Length = 1300 Score = 29.3 bits (64), Expect = 9.2 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%) Frame = +3 Query: 345 LPPQNAQTLSLSRKPLPPFGRSSSGV-LPPTVL*LY----SPGGAPGSFISVSGGRASST 509 LPP+ T L KP+ P +S G+ LPPTV + SP P S ASS Sbjct: 503 LPPEKPVTTWLDSKPVLPTVPTSVGLQLPPTVPGAHGYADSPSATPASRSPQRPSPASSE 562 Query: 510 C 512 C Sbjct: 563 C 563
>NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 precursor (Notch| 4) (hNotch4) [Contains: Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 2003 Score = 29.3 bits (64), Expect = 9.2 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 156 VGEQTPRRETRASRCPPEPCTH 91 VG++ PR E RA CPP C++ Sbjct: 224 VGQEGPRCELRAGPCPPRGCSN 245
>LTB1L_HUMAN (Q14766) Latent transforming growth factor beta-binding protein,| isoform 1L precursor (LTBP-1) (Transforming growth factor beta-1-binding protein 1) (TGF-beta1-BP-1) Length = 1595 Score = 29.3 bits (64), Expect = 9.2 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 2/74 (2%) Frame = -1 Query: 604 SRACLSSSCPARCQAGSGIYGGRERRKEGTVQVLDARPPETEMKEPGAP--PGEYSYSTV 431 SR+ ++ P+R G R K G + RPP EP P PG + Sbjct: 64 SRSSAAAGAPSRASPGVPSERTRRTSKPGGAALQGLRPPPPPPPEPARPAVPGGQLHPNP 123 Query: 430 GGSTPELERPKGGR 389 GG K GR Sbjct: 124 GGHPAAAPFTKQGR 137
>EGLN2_HUMAN (Q96KS0) Egl nine homolog 2 (EC 1.14.11.-) (Hypoxia-inducible| factor prolyl hydroxylase 1) (HIF-prolyl hydroxylase 1) (HIF-PH1) (HPH-3) (Prolyl hydroxylase domain-containing protein 1) (PHD1) (Estrogen-induced tag 6) Length = 407 Score = 29.3 bits (64), Expect = 9.2 Identities = 24/78 (30%), Positives = 33/78 (42%) Frame = -3 Query: 419 ARARATKRRQGFAGKGQGLSVLRREEGAYSRHAGSCSRAGYATVRTRREERNDAERNGSR 240 A A TK Q A +G +R+ A S S+ +A R+E +AER G Sbjct: 96 AAALVTKGCQRLAAQGARPEAPKRKWAEDGGDAPSPSKRPWA-----RQENQEAEREGGM 150 Query: 239 LIACFASSGGTVANLGHE 186 +C + SG A L E Sbjct: 151 SCSCSSGSGEASAGLMEE 168
>FZD5_HUMAN (Q13467) Frizzled 5 precursor (Frizzled-5) (Fz-5) (hFz5) (FzE5)| Length = 585 Score = 29.3 bits (64), Expect = 9.2 Identities = 22/65 (33%), Positives = 23/65 (35%) Frame = +1 Query: 325 CLEYAPSSLLKTLKPCPFPANPCRLLVALALAYCHPLCYSYTPXXXXXXXXXXXQVDGRP 504 C Y P L KP P PCR + A A C PL Y V GR Sbjct: 87 CTMYTPICLPDYHKPLP----PCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGRD 142 Query: 505 APALC 519 A LC Sbjct: 143 AEVLC 147
>ECM17_YEAST (P47169) Sulfite reductase [NADPH] beta subunit (EC 1.8.1.2)| (Extracellular matrix protein 17) Length = 1442 Score = 29.3 bits (64), Expect = 9.2 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 7/83 (8%) Frame = -3 Query: 401 KRRQGFAGKGQGLSVLRREEGAYSRHAGSCSRAGYATVRTRREERNDAE-------RNGS 243 K+ Q F + L++L R++ + SR+ AG A R ++E+R+ A +G Sbjct: 624 KQLQDFLDRENKLTLLTRKDPSLSRNLKQS--AGDALTR-KQEKRSKAAFDQLLEGLSGP 680 Query: 242 RLIACFASSGGTVANLGHERAGR 174 L +AS GG ANL A R Sbjct: 681 PLHVYYASDGGNAANLAKRLAAR 703
>RL2_RHIME (Q92QG7) 50S ribosomal protein L2| Length = 278 Score = 29.3 bits (64), Expect = 9.2 Identities = 32/114 (28%), Positives = 40/114 (35%), Gaps = 13/114 (11%) Frame = -3 Query: 431 GWQYARARATKRRQGFAGKGQGLSVLRREEGAYSRHAGSCSRAGYATVRTRREERNDAER 252 G Q AR+ T + G+ QG+++LR G GSC + A ND + Sbjct: 152 GGQIARSAGTYAQ--LVGRDQGMAILRLNSGEQRLVHGSCLASIGAVSNPDHGNINDGKA 209 Query: 251 NGSRLIACFASSGGTVAN---------LGHERAGRH----GGIPA*GSRRREGK 129 SR G V N G GRH G P G R R K Sbjct: 210 GRSRWRGKRPHVRGVVMNPVDHPHGGGEGRTSGGRHPVTPWGKPTKGKRTRSNK 263 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,192,004 Number of Sequences: 219361 Number of extensions: 2030692 Number of successful extensions: 7498 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 6829 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7495 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
