ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd19b22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MOAC_STAS1 (Q49ZJ2) Molybdenum cofactor biosynthesis protein C 32 0.90
2ARGC2_DEIRA (Q9RY72) N-acetyl-gamma-glutamyl-phosphate reductase... 30 3.4
3RS10_CHLPN (Q9Z803) 30S ribosomal protein S10 30 3.4
4ATG9_YEAST (Q12142) Autophagy-related protein 9 (Cytoplasm to va... 29 7.6
5RS10_CHLTR (P0A4A1) 30S ribosomal protein S10 29 7.6
6RS10_CHLMU (P0A4A2) 30S ribosomal protein S10 29 7.6
7FETP_PSEPK (Q88R49) Probable Fe(2+) trafficking protein 28 9.9
8PPR3D_HUMAN (O95685) Protein phosphatase 1 regulatory subunit 3D... 28 9.9
9RS10_CHLCV (Q824F9) 30S ribosomal protein S10 28 9.9

>MOAC_STAS1 (Q49ZJ2) Molybdenum cofactor biosynthesis protein C|
          Length = 162

 Score = 32.0 bits (71), Expect = 0.90
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +2

Query: 203 AKSLAVVVP*CTKLPSATALKTFDQLEAQRSFLLHIQT 316
           AK+ A ++P C +LP      TFD  E ++S+ L+IQT
Sbjct: 66  AKNTADIIPMCHQLPLTGIDVTFDWQENEQSYTLNIQT 103



to top

>ARGC2_DEIRA (Q9RY72) N-acetyl-gamma-glutamyl-phosphate reductase 2 (EC|
           1.2.1.38) (AGPR 2) (N-acetyl-glutamate semialdehyde
           dehydrogenase 2) (NAGSA dehydrogenase 2)
          Length = 306

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = +2

Query: 293 SFLLHIQTARRSHPDIVFGFP 355
           S LL   TA R HPD VFGFP
Sbjct: 76  SRLLDASTAHRIHPDWVFGFP 96



to top

>RS10_CHLPN (Q9Z803) 30S ribosomal protein S10|
          Length = 105

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 260 LKTFDQLEAQRSFLLHIQTARRSHPDIVFGFPLPVV*DFYAIL 388
           LK FDQ +  RS    ++TA+R+   +V   PLP   + Y +L
Sbjct: 12  LKGFDQGQLDRSTADIVETAKRTGARVVGPIPLPTKREVYTVL 54



to top

>ATG9_YEAST (Q12142) Autophagy-related protein 9 (Cytoplasm to vacuole|
           targeting protein 7)
          Length = 997

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 202 HPLTPLEHSLRVPGKNWYGNPFPSAPTCSGSDLKN 98
           H ++P  +S R PGKNW  N        +G D+KN
Sbjct: 896 HNISPAIYSTRNPGKNWDNNN-------NGDDIKN 923



to top

>RS10_CHLTR (P0A4A1) 30S ribosomal protein S10|
          Length = 105

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 260 LKTFDQLEAQRSFLLHIQTARRSHPDIVFGFPLPVV*DFYAIL 388
           LK FDQ +  +S    ++TA+R+   +V   PLP   + Y +L
Sbjct: 12  LKGFDQGQLDQSTANIVETAKRTGARVVGPIPLPTKREVYTVL 54



to top

>RS10_CHLMU (P0A4A2) 30S ribosomal protein S10|
          Length = 105

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 260 LKTFDQLEAQRSFLLHIQTARRSHPDIVFGFPLPVV*DFYAIL 388
           LK FDQ +  +S    ++TA+R+   +V   PLP   + Y +L
Sbjct: 12  LKGFDQGQLDQSTANIVETAKRTGARVVGPIPLPTKREVYTVL 54



to top

>FETP_PSEPK (Q88R49) Probable Fe(2+) trafficking protein|
          Length = 90

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = -2

Query: 431 EAASQRDW--WEKRVRIKLH-KNPKLREGESQKRYQ---DGFFAQFEYAAENFFAPPA 276
           E  SQ+ W  W+K   + ++ K   +   E +K  Q   D FFA  EYA    + PPA
Sbjct: 32  EHISQKAWADWQKHQTMLINEKRLNMMNAEDRKFLQAEMDKFFAGEEYAQAEGYVPPA 89



to top

>PPR3D_HUMAN (O95685) Protein phosphatase 1 regulatory subunit 3D (Protein|
           phosphatase 1, regulatory subunit 6) (Protein
           phosphatase 1-binding subunit R6)
          Length = 299

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 172 RVPGKNWYGNPFPSAPTCSGSDLKNSPLSRHRSRALPTSP 53
           R PG    G   P  P  SG D +  P+   R+R+LP+SP
Sbjct: 42  RPPGSP--GRAPPPTPAPSGCDPRLRPIILRRARSLPSSP 79



to top

>RS10_CHLCV (Q824F9) 30S ribosomal protein S10|
          Length = 105

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 260 LKTFDQLEAQRSFLLHIQTARRSHPDIVFGFPLPVV*DFYAIL 388
           LK FDQ +  RS    ++TA+R+   +    PLP   + Y +L
Sbjct: 12  LKGFDQGQLDRSTADIVETAKRTGARVAGPIPLPTKREVYTVL 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,281,564
Number of Sequences: 219361
Number of extensions: 1248720
Number of successful extensions: 3093
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3093
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top