| Clone Name | basd18m21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473864.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 864 Score = 638 bits (322), Expect = e-180 Identities = 454/499 (90%) Strand = Plus / Plus Query: 78 cccccgacctcctcttnaacctgcgcaacctcttctacctcggcgcctaccagtccggca 137 |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| || Sbjct: 8 ccccggacctcctcttcaacctgcgcaacctcttctacctcggcgcctaccaggccgcca 67 Query: 138 tcaacaacagcgacgtcccgggcctcgacgccgacgccgcggccgagcgcgacgtnatcg 197 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 68 tcaacaacagcgacgtcccgggcctcgacgccgacgccgccgccgagcgcgacgccatcg 127 Query: 198 tcttccgctcctacatcgccctcggatcctaccagctggtgatcagcgagatcgactcgt 257 |||||||||||||| |||| ||||| ||||||||| |||||||||||||||||||||||| Sbjct: 128 tcttccgctcctacgtcgcgctcggctcctaccagttggtgatcagcgagatcgactcgt 187 Query: 258 cggcggcgacgtcgctgcaggccgtcaagctgctcgcgctctacctcaccggagacaagg 317 | ||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| Sbjct: 188 ccgcggcgacgtcgctgcaggccgtgaagctgctcgcgctgtacctctccggagacaagg 247 Query: 318 aaggtgcgatctccagcttgaaggaatggttgagtgattcagccataggaagcaatcctg 377 || ||||||| ||| |||||||||||||||||||||| || | ||||||||||||| Sbjct: 248 aaagtgcgattgtcagtctgaaggaatggttgagtgattcggcggttggaagcaatcctg 307 Query: 378 ttctgcgattgattgctggaattatatttatgcatgagcaagactacaacgaggctctca 437 |||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 308 ttctacgattgattgctggaattatatttatgcatgagcaagactacactgaagctctca 367 Query: 438 agcacacacatactgggggaactctggacctgcatgcactgaacgtncagatcttcctta 497 |||||||||| |||| ||||||||||||||||||||| |||| || ||||||||| ||| Sbjct: 368 agcacacacactctggtggaactctggacctgcatgcattgaatgtccagatcttcatta 427 Query: 498 agatgcaccgctcagattatgctgacaagcaactgaagatcatgcaacaaactgacgagg 557 |||||||||| ||||| ||||| || |||||| | |||||||||||||| | ||| |||| Sbjct: 428 agatgcaccgttcagactatgccgagaagcaattaaagatcatgcaacagattgatgagg 487 Query: 558 accatacactgacacaact 576 ||||||||||||||||||| Sbjct: 488 accatacactgacacaact 506
>dbj|AK104427.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-A04, full insert sequence Length = 1207 Score = 638 bits (322), Expect = e-180 Identities = 454/499 (90%) Strand = Plus / Plus Query: 78 cccccgacctcctcttnaacctgcgcaacctcttctacctcggcgcctaccagtccggca 137 |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| || Sbjct: 140 ccccggacctcctcttcaacctgcgcaacctcttctacctcggcgcctaccaggccgcca 199 Query: 138 tcaacaacagcgacgtcccgggcctcgacgccgacgccgcggccgagcgcgacgtnatcg 197 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 200 tcaacaacagcgacgtcccgggcctcgacgccgacgccgccgccgagcgcgacgccatcg 259 Query: 198 tcttccgctcctacatcgccctcggatcctaccagctggtgatcagcgagatcgactcgt 257 |||||||||||||| |||| ||||| ||||||||| |||||||||||||||||||||||| Sbjct: 260 tcttccgctcctacgtcgcgctcggctcctaccagttggtgatcagcgagatcgactcgt 319 Query: 258 cggcggcgacgtcgctgcaggccgtcaagctgctcgcgctctacctcaccggagacaagg 317 | ||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| Sbjct: 320 ccgcggcgacgtcgctgcaggccgtgaagctgctcgcgctgtacctctccggagacaagg 379 Query: 318 aaggtgcgatctccagcttgaaggaatggttgagtgattcagccataggaagcaatcctg 377 || ||||||| ||| |||||||||||||||||||||| || | ||||||||||||| Sbjct: 380 aaagtgcgattgtcagtctgaaggaatggttgagtgattcggcggttggaagcaatcctg 439 Query: 378 ttctgcgattgattgctggaattatatttatgcatgagcaagactacaacgaggctctca 437 |||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 440 ttctacgattgattgctggaattatatttatgcatgagcaagactacactgaagctctca 499 Query: 438 agcacacacatactgggggaactctggacctgcatgcactgaacgtncagatcttcctta 497 |||||||||| |||| ||||||||||||||||||||| |||| || ||||||||| ||| Sbjct: 500 agcacacacactctggtggaactctggacctgcatgcattgaatgtccagatcttcatta 559 Query: 498 agatgcaccgctcagattatgctgacaagcaactgaagatcatgcaacaaactgacgagg 557 |||||||||| ||||| ||||| || |||||| | |||||||||||||| | ||| |||| Sbjct: 560 agatgcaccgttcagactatgccgagaagcaattaaagatcatgcaacagattgatgagg 619 Query: 558 accatacactgacacaact 576 ||||||||||||||||||| Sbjct: 620 accatacactgacacaact 638
>dbj|AK099008.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120E14, full insert sequence Length = 1218 Score = 638 bits (322), Expect = e-180 Identities = 454/499 (90%) Strand = Plus / Plus Query: 78 cccccgacctcctcttnaacctgcgcaacctcttctacctcggcgcctaccagtccggca 137 |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| || Sbjct: 113 ccccggacctcctcttcaacctgcgcaacctcttctacctcggcgcctaccaggccgcca 172 Query: 138 tcaacaacagcgacgtcccgggcctcgacgccgacgccgcggccgagcgcgacgtnatcg 197 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 173 tcaacaacagcgacgtcccgggcctcgacgccgacgccgccgccgagcgcgacgccatcg 232 Query: 198 tcttccgctcctacatcgccctcggatcctaccagctggtgatcagcgagatcgactcgt 257 |||||||||||||| |||| ||||| ||||||||| |||||||||||||||||||||||| Sbjct: 233 tcttccgctcctacgtcgcgctcggctcctaccagttggtgatcagcgagatcgactcgt 292 Query: 258 cggcggcgacgtcgctgcaggccgtcaagctgctcgcgctctacctcaccggagacaagg 317 | ||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| Sbjct: 293 ccgcggcgacgtcgctgcaggccgtgaagctgctcgcgctgtacctctccggagacaagg 352 Query: 318 aaggtgcgatctccagcttgaaggaatggttgagtgattcagccataggaagcaatcctg 377 || ||||||| ||| |||||||||||||||||||||| || | ||||||||||||| Sbjct: 353 aaagtgcgattgtcagtctgaaggaatggttgagtgattcggcggttggaagcaatcctg 412 Query: 378 ttctgcgattgattgctggaattatatttatgcatgagcaagactacaacgaggctctca 437 |||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 413 ttctacgattgattgctggaattatatttatgcatgagcaagactacactgaagctctca 472 Query: 438 agcacacacatactgggggaactctggacctgcatgcactgaacgtncagatcttcctta 497 |||||||||| |||| ||||||||||||||||||||| |||| || ||||||||| ||| Sbjct: 473 agcacacacactctggtggaactctggacctgcatgcattgaatgtccagatcttcatta 532 Query: 498 agatgcaccgctcagattatgctgacaagcaactgaagatcatgcaacaaactgacgagg 557 |||||||||| ||||| ||||| || |||||| | |||||||||||||| | ||| |||| Sbjct: 533 agatgcaccgttcagactatgccgagaagcaattaaagatcatgcaacagattgatgagg 592 Query: 558 accatacactgacacaact 576 ||||||||||||||||||| Sbjct: 593 accatacactgacacaact 611
>dbj|AK060707.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H03, full insert sequence Length = 1262 Score = 638 bits (322), Expect = e-180 Identities = 454/499 (90%) Strand = Plus / Plus Query: 78 cccccgacctcctcttnaacctgcgcaacctcttctacctcggcgcctaccagtccggca 137 |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| || Sbjct: 138 ccccggacctcctcttcaacctgcgcaacctcttctacctcggcgcctaccaggccgcca 197 Query: 138 tcaacaacagcgacgtcccgggcctcgacgccgacgccgcggccgagcgcgacgtnatcg 197 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 198 tcaacaacagcgacgtcccgggcctcgacgccgacgccgccgccgagcgcgacgccatcg 257 Query: 198 tcttccgctcctacatcgccctcggatcctaccagctggtgatcagcgagatcgactcgt 257 |||||||||||||| |||| ||||| ||||||||| |||||||||||||||||||||||| Sbjct: 258 tcttccgctcctacgtcgcgctcggctcctaccagttggtgatcagcgagatcgactcgt 317 Query: 258 cggcggcgacgtcgctgcaggccgtcaagctgctcgcgctctacctcaccggagacaagg 317 | ||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| Sbjct: 318 ccgcggcgacgtcgctgcaggccgtgaagctgctcgcgctgtacctctccggagacaagg 377 Query: 318 aaggtgcgatctccagcttgaaggaatggttgagtgattcagccataggaagcaatcctg 377 || ||||||| ||| |||||||||||||||||||||| || | ||||||||||||| Sbjct: 378 aaagtgcgattgtcagtctgaaggaatggttgagtgattcggcggttggaagcaatcctg 437 Query: 378 ttctgcgattgattgctggaattatatttatgcatgagcaagactacaacgaggctctca 437 |||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 438 ttctacgattgattgctggaattatatttatgcatgagcaagactacactgaagctctca 497 Query: 438 agcacacacatactgggggaactctggacctgcatgcactgaacgtncagatcttcctta 497 |||||||||| |||| ||||||||||||||||||||| |||| || ||||||||| ||| Sbjct: 498 agcacacacactctggtggaactctggacctgcatgcattgaatgtccagatcttcatta 557 Query: 498 agatgcaccgctcagattatgctgacaagcaactgaagatcatgcaacaaactgacgagg 557 |||||||||| ||||| ||||| || |||||| | |||||||||||||| | ||| |||| Sbjct: 558 agatgcaccgttcagactatgccgagaagcaattaaagatcatgcaacagattgatgagg 617 Query: 558 accatacactgacacaact 576 ||||||||||||||||||| Sbjct: 618 accatacactgacacaact 636
>dbj|AB042115.1| Oryza sativa (japonica cultivar-group) cope1 mRNA for epsilon1-COP, complete cds Length = 1207 Score = 638 bits (322), Expect = e-180 Identities = 454/499 (90%) Strand = Plus / Plus Query: 78 cccccgacctcctcttnaacctgcgcaacctcttctacctcggcgcctaccagtccggca 137 |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| || Sbjct: 130 ccccggacctcctcttcaacctgcgcaacctcttctacctcggcgcctaccaggccgcca 189 Query: 138 tcaacaacagcgacgtcccgggcctcgacgccgacgccgcggccgagcgcgacgtnatcg 197 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 190 tcaacaacagcgacgtcccgggcctcgacgccgacgccgccgccgagcgcgacgccatcg 249 Query: 198 tcttccgctcctacatcgccctcggatcctaccagctggtgatcagcgagatcgactcgt 257 |||||||||||||| |||| ||||| ||||||||| |||||||||||||||||||||||| Sbjct: 250 tcttccgctcctacgtcgcgctcggctcctaccagttggtgatcagcgagatcgactcgt 309 Query: 258 cggcggcgacgtcgctgcaggccgtcaagctgctcgcgctctacctcaccggagacaagg 317 | ||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| Sbjct: 310 ccgcggcgacgtcgctgcaggccgtgaagctgctcgcgctgtacctctccggagacaagg 369 Query: 318 aaggtgcgatctccagcttgaaggaatggttgagtgattcagccataggaagcaatcctg 377 || ||||||| ||| |||||||||||||||||||||| || | ||||||||||||| Sbjct: 370 aaagtgcgattgtcagtctgaaggaatggttgagtgattcggcggttggaagcaatcctg 429 Query: 378 ttctgcgattgattgctggaattatatttatgcatgagcaagactacaacgaggctctca 437 |||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 430 ttctacgattgattgctggaattatatttatgcatgagcaagactacactgaagctctca 489 Query: 438 agcacacacatactgggggaactctggacctgcatgcactgaacgtncagatcttcctta 497 |||||||||| |||| ||||||||||||||||||||| |||| || ||||||||| ||| Sbjct: 490 agcacacacactctggtggaactctggacctgcatgcattgaatgtccagatcttcatta 549 Query: 498 agatgcaccgctcagattatgctgacaagcaactgaagatcatgcaacaaactgacgagg 557 |||||||||| ||||| ||||| || |||||| | |||||||||||||| | ||| |||| Sbjct: 550 agatgcaccgttcagactatgccgagaagcaattaaagatcatgcaacagattgatgagg 609 Query: 558 accatacactgacacaact 576 ||||||||||||||||||| Sbjct: 610 accatacactgacacaact 628
>gb|AF216853.1|AF216853 Zea mays epsilon-COP mRNA, complete cds Length = 1180 Score = 618 bits (312), Expect = e-174 Identities = 459/509 (90%) Strand = Plus / Plus Query: 68 gcgatggccacccccgacctcctcttnaacctgcgcaacctcttctacctcggcgcctac 127 ||||||||| |||||||||| ||||| || ||||| |||||||||||||| ||||||||| Sbjct: 101 gcgatggcctcccccgacctgctcttcaatctgcggaacctcttctacctgggcgcctac 160 Query: 128 cagtccggcatcaacaacagcgacgtcccgggcctcgacgccgacgccgcggccgagcgc 187 ||| | | |||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 161 caggcagccatcaacaacagcgacgtcccgggcctcgacgccgacgccgccgctgagcgc 220 Query: 188 gacgtnatcgtcttccgctcctacatcgccctcggatcctaccagctggtgatcagcgag 247 |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 221 gacgccatcgtcttccgctcctacatcgccctcggctcctaccagctggtgatcagcgag 280 Query: 248 atcgactcgtcggcggcgacgtcgctgcaggccgtcaagctgctcgcgctctacctcacc 307 ||||||||||| || || || |||||||||||||| |||||||||||||| |||||||| Sbjct: 281 atcgactcgtcagccgctacctcgctgcaggccgtgaagctgctcgcgctgtacctcact 340 Query: 308 ggagacaaggaaggtgcgatctccagcttgaaggaatggttgagtgattcagccatagga 367 ||||||||||||||||| |||||||| | ||||||||||||||||||||||| || ||| Sbjct: 341 ggagacaaggaaggtgctatctccagtctcaaggaatggttgagtgattcagcaattgga 400 Query: 368 agcaatcctgttctgcgattgattgctggaattatatttatgcatgagcaagactacaac 427 ||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||| Sbjct: 401 agcaatcctgttctgcggttgattgctggaattgtatttatgcatgagcaggactacaat 460 Query: 428 gaggctctcaagcacacacatactgggggaactctggacctgcatgcactgaacgtncag 487 |||||||||||||||||||| |||| ||||||||||| |||||||| |||| || ||| Sbjct: 461 gaggctctcaagcacacacactctggaggaactctggatttgcatgcattgaatgtccag 520 Query: 488 atcttccttaagatgcaccgctcagattatgctgacaagcaactgaagatcatgcaacaa 547 |||||| | |||||||| || ||||| |||||||| |||||| ||||||||||||||||| Sbjct: 521 atcttcatcaagatgcatcgttcagactatgctgagaagcaattgaagatcatgcaacaa 580 Query: 548 actgacgaggaccatacactgacacaact 576 | ||| || ||||||||||| |||||||| Sbjct: 581 attgatgaagaccatacacttacacaact 609
>gb|AY105373.1| Zea mays PCO148993 mRNA sequence Length = 1262 Score = 618 bits (312), Expect = e-174 Identities = 459/509 (90%) Strand = Plus / Plus Query: 68 gcgatggccacccccgacctcctcttnaacctgcgcaacctcttctacctcggcgcctac 127 ||||||||| |||||||||| ||||| || ||||| |||||||||||||| ||||||||| Sbjct: 101 gcgatggcctcccccgacctgctcttcaatctgcggaacctcttctacctgggcgcctac 160 Query: 128 cagtccggcatcaacaacagcgacgtcccgggcctcgacgccgacgccgcggccgagcgc 187 ||| | | |||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 161 caggcagccatcaacaacagcgacgtcccgggcctcgacgccgacgccgccgctgagcgc 220 Query: 188 gacgtnatcgtcttccgctcctacatcgccctcggatcctaccagctggtgatcagcgag 247 |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 221 gacgccatcgtcttccgctcctacatcgccctcggctcctaccagctggtgatcagcgag 280 Query: 248 atcgactcgtcggcggcgacgtcgctgcaggccgtcaagctgctcgcgctctacctcacc 307 ||||||||||| || || || |||||||||||||| |||||||||||||| |||||||| Sbjct: 281 atcgactcgtcagccgctacctcgctgcaggccgtgaagctgctcgcgctgtacctcact 340 Query: 308 ggagacaaggaaggtgcgatctccagcttgaaggaatggttgagtgattcagccatagga 367 ||||||||||||||||| |||||||| | ||||||||||||||||||||||| || ||| Sbjct: 341 ggagacaaggaaggtgctatctccagtctcaaggaatggttgagtgattcagcaattgga 400 Query: 368 agcaatcctgttctgcgattgattgctggaattatatttatgcatgagcaagactacaac 427 ||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||| Sbjct: 401 agcaatcctgttctgcggttgattgctggaattgtatttatgcatgagcaggactacaat 460 Query: 428 gaggctctcaagcacacacatactgggggaactctggacctgcatgcactgaacgtncag 487 |||||||||||||||||||| |||| ||||||||||| |||||||| |||| || ||| Sbjct: 461 gaggctctcaagcacacacactctggaggaactctggatttgcatgcattgaatgtccag 520 Query: 488 atcttccttaagatgcaccgctcagattatgctgacaagcaactgaagatcatgcaacaa 547 |||||| | |||||||| || ||||| |||||||| |||||| ||||||||||||||||| Sbjct: 521 atcttcatcaagatgcatcgttcagactatgctgagaagcaattgaagatcatgcaacaa 580 Query: 548 actgacgaggaccatacactgacacaact 576 | ||| || ||||||||||| |||||||| Sbjct: 581 attgatgaagaccatacacttacacaact 609
>gb|BT016527.1| Zea mays clone Contig360 mRNA sequence Length = 1201 Score = 611 bits (308), Expect = e-171 Identities = 458/509 (89%) Strand = Plus / Plus Query: 68 gcgatggccacccccgacctcctcttnaacctgcgcaacctcttctacctcggcgcctac 127 ||||||||| |||||||||| ||||| || ||||| |||||||||||||| ||||||||| Sbjct: 111 gcgatggcctcccccgacctgctcttcaatctgcggaacctcttctacctgggcgcctac 170 Query: 128 cagtccggcatcaacaacagcgacgtcccgggcctcgacgccgacgccgcggccgagcgc 187 ||| | | |||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 171 caggcagccatcaacaacagcgacgtcccgggcctcgacgccgacgccgccgctgagcgc 230 Query: 188 gacgtnatcgtcttccgctcctacatcgccctcggatcctaccagctggtgatcagcgag 247 |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 231 gacgccatcgtcttccgctcctacatcgccctcggctcctaccagctggtgatcagcgag 290 Query: 248 atcgactcgtcggcggcgacgtcgctgcaggccgtcaagctgctcgcgctctacctcacc 307 ||||||||||| || || || |||||||||||||| |||||||||||||| |||||||| Sbjct: 291 atcgactcgtcagccgctacctcgctgcaggccgtgaagctgctcgcgctgtacctcact 350 Query: 308 ggagacaaggaaggtgcgatctccagcttgaaggaatggttgagtgattcagccatagga 367 ||||||||||||||||| |||||||| | ||||| ||||||||||||||||| || ||| Sbjct: 351 ggagacaaggaaggtgctatctccagtctcaaggagtggttgagtgattcagcaattgga 410 Query: 368 agcaatcctgttctgcgattgattgctggaattatatttatgcatgagcaagactacaac 427 ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct: 411 agcaatcctgttctgagattgattgctggaattatatttatgcatgagcaggactacaat 470 Query: 428 gaggctctcaagcacacacatactgggggaactctggacctgcatgcactgaacgtncag 487 ||||||||||| |||||||| |||| ||||||||||| |||||||| |||| || ||| Sbjct: 471 gaggctctcaaacacacacactctggaggaactctggatttgcatgcattgaatgtccag 530 Query: 488 atcttccttaagatgcaccgctcagattatgctgacaagcaactgaagatcatgcaacaa 547 |||||| | |||||||| || ||||| |||||||| |||||| ||||||||||||||||| Sbjct: 531 atcttcatcaagatgcatcgttcagactatgctgagaagcaattgaagatcatgcaacaa 590 Query: 548 actgacgaggaccatacactgacacaact 576 | ||| || ||||||||||| |||||||| Sbjct: 591 attgatgaagaccatacacttacacaact 619
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 232 bits (117), Expect = 1e-57 Identities = 145/155 (93%) Strand = Plus / Minus Query: 78 cccccgacctcctcttnaacctgcgcaacctcttctacctcggcgcctaccagtccggca 137 |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| || Sbjct: 84730 ccccggacctcctcttcaacctgcgcaacctcttctacctcggcgcctaccaggccgcca 84671 Query: 138 tcaacaacagcgacgtcccgggcctcgacgccgacgccgcggccgagcgcgacgtnatcg 197 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 84670 tcaacaacagcgacgtcccgggcctcgacgccgacgccgccgccgagcgcgacgccatcg 84611 Query: 198 tcttccgctcctacatcgccctcggatcctaccag 232 |||||||||||||| |||| ||||| ||||||||| Sbjct: 84610 tcttccgctcctacgtcgcgctcggctcctaccag 84576 Score = 178 bits (90), Expect = 1e-41 Identities = 123/134 (91%) Strand = Plus / Minus Query: 336 tgaaggaatggttgagtgattcagccataggaagcaatcctgttctgcgattgattgctg 395 |||||||||||||||||||||| || | ||||||||||||||||| ||||||||||||| Sbjct: 83408 tgaaggaatggttgagtgattcggcggttggaagcaatcctgttctacgattgattgctg 83349 Query: 396 gaattatatttatgcatgagcaagactacaacgaggctctcaagcacacacatactgggg 455 |||||||||||||||||||||||||||||| || ||||||||||||||||| |||| | Sbjct: 83348 gaattatatttatgcatgagcaagactacactgaagctctcaagcacacacactctggtg 83289 Query: 456 gaactctggacctg 469 |||||||||||||| Sbjct: 83288 gaactctggacctg 83275 Score = 135 bits (68), Expect = 2e-28 Identities = 80/84 (95%) Strand = Plus / Minus Query: 234 tggtgatcagcgagatcgactcgtcggcggcgacgtcgctgcaggccgtcaagctgctcg 293 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 84470 tggtgatcagcgagatcgactcgtccgcggcgacgtcgctgcaggccgtgaagctgctcg 84411 Query: 294 cgctctacctcaccggagacaagg 317 |||| |||||| |||||||||||| Sbjct: 84410 cgctgtacctctccggagacaagg 84387 Score = 113 bits (57), Expect = 7e-22 Identities = 95/108 (87%) Strand = Plus / Minus Query: 469 gcatgcactgaacgtncagatcttccttaagatgcaccgctcagattatgctgacaagca 528 ||||||| |||| || ||||||||| ||||||||||||| ||||| ||||| || ||||| Sbjct: 82697 gcatgcattgaatgtccagatcttcattaagatgcaccgttcagactatgccgagaagca 82638 Query: 529 actgaagatcatgcaacaaactgacgaggaccatacactgacacaact 576 | | |||||||||||||| | ||| ||||||||||||||||||||||| Sbjct: 82637 attaaagatcatgcaacagattgatgaggaccatacactgacacaact 82590
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 232 bits (117), Expect = 1e-57 Identities = 145/155 (93%) Strand = Plus / Minus Query: 78 cccccgacctcctcttnaacctgcgcaacctcttctacctcggcgcctaccagtccggca 137 |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| || Sbjct: 31102649 ccccggacctcctcttcaacctgcgcaacctcttctacctcggcgcctaccaggccgcca 31102590 Query: 138 tcaacaacagcgacgtcccgggcctcgacgccgacgccgcggccgagcgcgacgtnatcg 197 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 31102589 tcaacaacagcgacgtcccgggcctcgacgccgacgccgccgccgagcgcgacgccatcg 31102530 Query: 198 tcttccgctcctacatcgccctcggatcctaccag 232 |||||||||||||| |||| ||||| ||||||||| Sbjct: 31102529 tcttccgctcctacgtcgcgctcggctcctaccag 31102495 Score = 178 bits (90), Expect = 1e-41 Identities = 123/134 (91%) Strand = Plus / Minus Query: 336 tgaaggaatggttgagtgattcagccataggaagcaatcctgttctgcgattgattgctg 395 |||||||||||||||||||||| || | ||||||||||||||||| ||||||||||||| Sbjct: 31101327 tgaaggaatggttgagtgattcggcggttggaagcaatcctgttctacgattgattgctg 31101268 Query: 396 gaattatatttatgcatgagcaagactacaacgaggctctcaagcacacacatactgggg 455 |||||||||||||||||||||||||||||| || ||||||||||||||||| |||| | Sbjct: 31101267 gaattatatttatgcatgagcaagactacactgaagctctcaagcacacacactctggtg 31101208 Query: 456 gaactctggacctg 469 |||||||||||||| Sbjct: 31101207 gaactctggacctg 31101194 Score = 135 bits (68), Expect = 2e-28 Identities = 80/84 (95%) Strand = Plus / Minus Query: 234 tggtgatcagcgagatcgactcgtcggcggcgacgtcgctgcaggccgtcaagctgctcg 293 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 31102389 tggtgatcagcgagatcgactcgtccgcggcgacgtcgctgcaggccgtgaagctgctcg 31102330 Query: 294 cgctctacctcaccggagacaagg 317 |||| |||||| |||||||||||| Sbjct: 31102329 cgctgtacctctccggagacaagg 31102306 Score = 113 bits (57), Expect = 7e-22 Identities = 95/108 (87%) Strand = Plus / Minus Query: 469 gcatgcactgaacgtncagatcttccttaagatgcaccgctcagattatgctgacaagca 528 ||||||| |||| || ||||||||| ||||||||||||| ||||| ||||| || ||||| Sbjct: 31100616 gcatgcattgaatgtccagatcttcattaagatgcaccgttcagactatgccgagaagca 31100557 Query: 529 actgaagatcatgcaacaaactgacgaggaccatacactgacacaact 576 | | |||||||||||||| | ||| ||||||||||||||||||||||| Sbjct: 31100556 attaaagatcatgcaacagattgatgaggaccatacactgacacaact 31100509
>gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1), unknown (Z438D03.5), epsilon-COP (Z438D03.6), putative kinase (Z438D03.7), unknown (Z438D03.25), and C1-B73 (Z438D03.27) genes, complete cds Length = 185988 Score = 180 bits (91), Expect = 3e-42 Identities = 146/165 (88%) Strand = Plus / Plus Query: 68 gcgatggccacccccgacctcctcttnaacctgcgcaacctcttctacctcggcgcctac 127 ||||||||| |||||||||| ||||| || ||||| |||||||||||||| ||||||||| Sbjct: 39633 gcgatggcctcccccgacctgctcttcaatctgcggaacctcttctacctgggcgcctac 39692 Query: 128 cagtccggcatcaacaacagcgacgtcccgggcctcgacgccgacgccgcggccgagcgc 187 ||| | | ||| ||||||| |||| ||| |||||||||||||| |||||| || |||||| Sbjct: 39693 caggcagccattaacaacatcgacatcctgggcctcgacgccgccgccgccgctgagcgc 39752 Query: 188 gacgtnatcgtcttccgctcctacatcgccctcggatcctaccag 232 |||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 39753 gacgccatcgtcttccgctcctacatcgccctcggctcctaccag 39797 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 269 tcgctgcaggccgtcaagctgctcgcgctctacctcaccggagacaagg 317 |||||||||||||| ||||||||||| || |||||||| |||||||||| Sbjct: 39837 tcgctgcaggccgtgaagctgctcgctctgtacctcactggagacaagg 39885
>ref|NM_102800.2| Arabidopsis thaliana protein transporter AT1G30630 mRNA, complete cds Length = 1199 Score = 89.7 bits (45), Expect = 9e-15 Identities = 122/148 (82%) Strand = Plus / Plus Query: 386 ttgattgctggaattatatttatgcatgagcaagactacaacgaggctctcaagcacaca 445 ||||||||||| | |||||| ||||||||| ||||||| || |||||||| |||||||| Sbjct: 419 ttgattgctggtactatattcatgcatgaggaagactataatgaggctctgaagcacact 478 Query: 446 catactgggggaactctggacctgcatgcactgaacgtncagatcttccttaagatgcac 505 ||| |||| ||||| |||| |||||||| |||| || ||||| ||| | ||||||||| Sbjct: 479 cattctggaggaaccatggatctgcatgctttgaatgtccagatattcataaagatgcac 538 Query: 506 cgctcagattatgctgacaagcaactga 533 | ||||||| ||| || || ||||||| Sbjct: 539 agatcagattttgcggagaaacaactga 566
>gb|AF348588.1| Arabidopsis thaliana putative coatomer protein, epsilon subunit (At1g30630) mRNA, complete cds Length = 879 Score = 89.7 bits (45), Expect = 9e-15 Identities = 122/148 (82%) Strand = Plus / Plus Query: 386 ttgattgctggaattatatttatgcatgagcaagactacaacgaggctctcaagcacaca 445 ||||||||||| | |||||| ||||||||| ||||||| || |||||||| |||||||| Sbjct: 331 ttgattgctggtactatattcatgcatgaggaagactataatgaggctctgaagcacact 390 Query: 446 catactgggggaactctggacctgcatgcactgaacgtncagatcttccttaagatgcac 505 ||| |||| ||||| |||| |||||||| |||| || ||||| ||| | ||||||||| Sbjct: 391 cattctggaggaaccatggatctgcatgctttgaatgtccagatattcataaagatgcac 450 Query: 506 cgctcagattatgctgacaagcaactga 533 | ||||||| ||| || || ||||||| Sbjct: 451 agatcagattttgcggagaaacaactga 478
>gb|AY063113.1| Arabidopsis thaliana putative coatomer protein, epsilon subunit (At1g30630) mRNA, complete cds Length = 910 Score = 89.7 bits (45), Expect = 9e-15 Identities = 122/148 (82%) Strand = Plus / Plus Query: 386 ttgattgctggaattatatttatgcatgagcaagactacaacgaggctctcaagcacaca 445 ||||||||||| | |||||| ||||||||| ||||||| || |||||||| |||||||| Sbjct: 331 ttgattgctggtactatattcatgcatgaggaagactataatgaggctctgaagcacact 390 Query: 446 catactgggggaactctggacctgcatgcactgaacgtncagatcttccttaagatgcac 505 ||| |||| ||||| |||| |||||||| |||| || ||||| ||| | ||||||||| Sbjct: 391 cattctggaggaaccatggatctgcatgctttgaatgtccagatattcataaagatgcac 450 Query: 506 cgctcagattatgctgacaagcaactga 533 | ||||||| ||| || || ||||||| Sbjct: 451 agatcagattttgcggagaaacaactga 478
>gb|AF370325.1| Arabidopsis thaliana putative coatomer protein, epsilon subunit (At1g30630) mRNA, complete cds Length = 1172 Score = 89.7 bits (45), Expect = 9e-15 Identities = 122/148 (82%) Strand = Plus / Plus Query: 386 ttgattgctggaattatatttatgcatgagcaagactacaacgaggctctcaagcacaca 445 ||||||||||| | |||||| ||||||||| ||||||| || |||||||| |||||||| Sbjct: 394 ttgattgctggtactatattcatgcatgaggaagactataatgaggctctgaagcacact 453 Query: 446 catactgggggaactctggacctgcatgcactgaacgtncagatcttccttaagatgcac 505 ||| |||| ||||| |||| |||||||| |||| || ||||| ||| | ||||||||| Sbjct: 454 cattctggaggaaccatggatctgcatgctttgaatgtccagatattcataaagatgcac 513 Query: 506 cgctcagattatgctgacaagcaactga 533 | ||||||| ||| || || ||||||| Sbjct: 514 agatcagattttgcggagaaacaactga 541
>emb|BX814617.1|CNS0ADQB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB84ZH02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1174 Score = 89.7 bits (45), Expect = 9e-15 Identities = 122/148 (82%) Strand = Plus / Plus Query: 386 ttgattgctggaattatatttatgcatgagcaagactacaacgaggctctcaagcacaca 445 ||||||||||| | |||||| ||||||||| ||||||| || |||||||| |||||||| Sbjct: 394 ttgattgctggtactatattcatgcatgaggaagactataatgaggctctgaagcacact 453 Query: 446 catactgggggaactctggacctgcatgcactgaacgtncagatcttccttaagatgcac 505 ||| |||| ||||| |||| |||||||| |||| || ||||| ||| | ||||||||| Sbjct: 454 cattctggaggaaccatggatctgcatgctttgaatgtccagatattcataaagatgcac 513 Query: 506 cgctcagattatgctgacaagcaactga 533 | ||||||| ||| || || ||||||| Sbjct: 514 agatcagattttgcggagaaacaactga 541
>emb|BX841764.1|CNS09Y7R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB11ZC12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1136 Score = 89.7 bits (45), Expect = 9e-15 Identities = 122/148 (82%) Strand = Plus / Plus Query: 386 ttgattgctggaattatatttatgcatgagcaagactacaacgaggctctcaagcacaca 445 ||||||||||| | |||||| ||||||||| ||||||| || |||||||| |||||||| Sbjct: 380 ttgattgctggtactatattcatgcatgaggaagactataatgaggctctgaagcacact 439 Query: 446 catactgggggaactctggacctgcatgcactgaacgtncagatcttccttaagatgcac 505 ||| |||| ||||| |||| |||||||| |||| || ||||| ||| | ||||||||| Sbjct: 440 cattctggaggaaccatggatctgcatgctttgaatgtccagatattcataaagatgcac 499 Query: 506 cgctcagattatgctgacaagcaactga 533 | ||||||| ||| || || ||||||| Sbjct: 500 agatcagattttgcggagaaacaactga 527
>gb|AY087474.1| Arabidopsis thaliana clone 35814 mRNA, complete sequence Length = 1189 Score = 89.7 bits (45), Expect = 9e-15 Identities = 122/148 (82%) Strand = Plus / Plus Query: 386 ttgattgctggaattatatttatgcatgagcaagactacaacgaggctctcaagcacaca 445 ||||||||||| | |||||| ||||||||| ||||||| || |||||||| |||||||| Sbjct: 419 ttgattgctggtactatattcatgcatgaggaagactataatgaggctctgaagcacact 478 Query: 446 catactgggggaactctggacctgcatgcactgaacgtncagatcttccttaagatgcac 505 ||| |||| ||||| |||| |||||||| |||| || ||||| ||| | ||||||||| Sbjct: 479 cattctggaggaaccatggatctgcatgctttgaatgtccagatattcataaagatgcac 538 Query: 506 cgctcagattatgctgacaagcaactga 533 | ||||||| ||| || || ||||||| Sbjct: 539 agatcagattttgcggagaaacaactga 566
>emb|BX814442.1|CNS0ADOH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB74ZA12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1145 Score = 77.8 bits (39), Expect = 4e-11 Identities = 107/130 (82%) Strand = Plus / Plus Query: 386 ttgattgctggaattatatttatgcatgagcaagactacaacgaggctctcaagcacaca 445 ||||||||||| | |||| | ||||||||| ||||||| | |||||||| |||||||| Sbjct: 408 ttgattgctggtactatactcatgcatgaggaagactatgatgaggctctgaagcacact 467 Query: 446 catactgggggaactctggacctgcatgcactgaacgtncagatcttccttaagatgcac 505 ||| |||| ||||| |||| |||||||| |||| || ||||| ||| | ||||||||| Sbjct: 468 cattctggaggaaccatggatctgcatgctttgaatgtccagatattcatgaagatgcac 527 Query: 506 cgctcagatt 515 ||||||||| Sbjct: 528 agctcagatt 537
>gb|AC007060.3|T5I8 Arabidopsis thaliana chromosome 1 BAC T5I8 sequence, complete sequence Length = 96183 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 386 ttgattgctggaattatatttatgcatgagcaagactacaacgaggctctcaagcacaca 445 ||||||||||| | |||||| ||||||||| ||||||| || |||||||| |||||||| Sbjct: 34812 ttgattgctggtactatattcatgcatgaggaagactataatgaggctctgaagcacact 34753 Query: 446 catactgggggaac 459 ||| |||| ||||| Sbjct: 34752 cattctggaggaac 34739
>dbj|AB042113.1| Glycine max cope1 mRNA for epsilon1-COP, complete cds Length = 1269 Score = 63.9 bits (32), Expect = 5e-07 Identities = 61/71 (85%) Strand = Plus / Plus Query: 83 gacctcctcttnaacctgcgcaacctcttctacctcggcgcctaccagtccggcatcaac 142 |||| |||||| ||||| |||||| ||||||||||||||| ||||| ||| ||||||| Sbjct: 71 gaccacctcttcaacctccgcaacaacttctacctcggcgcttaccaagccgccatcaac 130 Query: 143 aacagcgacgt 153 | ||||||||| Sbjct: 131 agcagcgacgt 141
>ref|XM_474096.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 894 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 202 ccgctcctacatcgccctcggatcctaccagctggtgatcagcgagatcg 251 |||||||||||||||| |||| ||| |||||||||||||| |||||||| Sbjct: 153 ccgctcctacatcgccatcggctcccaccagctggtgatcgacgagatcg 202
>gb|AC149424.1| Populus trichocarpa clone Pop1-011N15, complete sequence Length = 152544 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 386 ttgattgctggaattatatttatgcatgagcaagactacaacgaggctctcaagcacac 444 |||||||||||||| ||||| ||||||||| | || ||||| |||||||| || ||||| Sbjct: 120897 ttgattgctggaatcatattaatgcatgaggaggattacaatgaggctctgaaacacac 120839
>gb|AC149297.1| Populus trichocarpa clone Pop1-015H07, complete sequence Length = 131790 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 386 ttgattgctggaattatatttatgcatgagcaagactacaacgaggctctcaagcacac 444 |||||||||||||| ||||| ||||||||| | || ||||| |||||||| || ||||| Sbjct: 5324 ttgattgctggaatcatattaatgcatgaggaggattacaatgaggctctgaaacacac 5266
>gb|AC149295.1| Populus trichocarpa clone Pop1-008L01, complete sequence Length = 101981 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 386 ttgattgctggaattatatttatgcatgagcaagactacaacgaggctctcaagcacac 444 |||||||||||||| ||||| ||||||||| | || ||||| |||||||| || ||||| Sbjct: 71706 ttgattgctggaatcatattaatgcatgaggaggattacaatgaggctctgaaacacac 71648
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Minus Query: 166 cgccgacgccgcggccgagcgcga 189 |||||||||||||||||||||||| Sbjct: 2065829 cgccgacgccgcggccgagcgcga 2065806
>ref|XM_465338.1| Oryza sativa (japonica cultivar-group), mRNA Length = 318 Score = 46.1 bits (23), Expect = 0.13 Identities = 64/78 (82%) Strand = Plus / Plus Query: 138 tcaacaacagcgacgtcccgggcctcgacgccgacgccgcggccgagcgcgacgtnatcg 197 ||||||||||||| ||||| | |||| ||||| |||||| | | |||||| || |||| Sbjct: 74 tcaacaacagcgatgtccctgacctcaccgccgccgccgccgacaagcgcggcgccatcg 133 Query: 198 tcttccgctcctacatcg 215 |||||| ||||| ||||| Sbjct: 134 tcttccactcctgcatcg 151
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.13 Identities = 64/78 (82%) Strand = Plus / Minus Query: 138 tcaacaacagcgacgtcccgggcctcgacgccgacgccgcggccgagcgcgacgtnatcg 197 ||||||||||||| ||||| | |||| ||||| |||||| | | |||||| || |||| Sbjct: 13531105 tcaacaacagcgatgtccctgacctcaccgccgccgccgccgacaagcgcggcgccatcg 13531046 Query: 198 tcttccgctcctacatcg 215 |||||| ||||| ||||| Sbjct: 13531045 tcttccactcctgcatcg 13531028 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cgacgccgacgccgcggccg 182 |||||||||||||||||||| Sbjct: 27678188 cgacgccgacgccgcggccg 27678207 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cgacgccgacgccgcggccg 182 |||||||||||||||||||| Sbjct: 21628607 cgacgccgacgccgcggccg 21628626
>dbj|AP005865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0037J12 Length = 118553 Score = 46.1 bits (23), Expect = 0.13 Identities = 64/78 (82%) Strand = Plus / Minus Query: 138 tcaacaacagcgacgtcccgggcctcgacgccgacgccgcggccgagcgcgacgtnatcg 197 ||||||||||||| ||||| | |||| ||||| |||||| | | |||||| || |||| Sbjct: 46410 tcaacaacagcgatgtccctgacctcaccgccgccgccgccgacaagcgcggcgccatcg 46351 Query: 198 tcttccgctcctacatcg 215 |||||| ||||| ||||| Sbjct: 46350 tcttccactcctgcatcg 46333
>dbj|AP004177.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1116_E03 Length = 126845 Score = 46.1 bits (23), Expect = 0.13 Identities = 64/78 (82%) Strand = Plus / Minus Query: 138 tcaacaacagcgacgtcccgggcctcgacgccgacgccgcggccgagcgcgacgtnatcg 197 ||||||||||||| ||||| | |||| ||||| |||||| | | |||||| || |||| Sbjct: 117034 tcaacaacagcgatgtccctgacctcaccgccgccgccgccgacaagcgcggcgccatcg 116975 Query: 198 tcttccgctcctacatcg 215 |||||| ||||| ||||| Sbjct: 116974 tcttccactcctgcatcg 116957
>ref|NM_129037.3| Arabidopsis thaliana protein transporter AT2G34840 mRNA, complete cds Length = 1161 Score = 44.1 bits (22), Expect = 0.50 Identities = 49/58 (84%) Strand = Plus / Plus Query: 195 tcgtcttccgctcctacatcgccctcggatcctaccagctggtgatcagcgagatcga 252 |||||||||| || |||||||||||||| ||| ||||| || ||||| |||||||| Sbjct: 228 tcgtcttccgatcttacatcgccctcggtagctatcagcttgttatcagtgagatcga 285 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 383 cgattgattgctggaattatatttatgcatga 414 |||||||||||||| ||||| || |||||||| Sbjct: 422 cgattgattgctggtattattttcatgcatga 453
>gb|AY142051.1| Arabidopsis thaliana At2g34840/F19I3.7 mRNA, complete cds Length = 882 Score = 44.1 bits (22), Expect = 0.50 Identities = 49/58 (84%) Strand = Plus / Plus Query: 195 tcgtcttccgctcctacatcgccctcggatcctaccagctggtgatcagcgagatcga 252 |||||||||| || |||||||||||||| ||| ||||| || ||||| |||||||| Sbjct: 137 tcgtcttccgatcttacatcgccctcggtagctatcagcttgttatcagtgagatcga 194 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 383 cgattgattgctggaattatatttatgcatga 414 |||||||||||||| ||||| || |||||||| Sbjct: 331 cgattgattgctggtattattttcatgcatga 362
>emb|AJ866984.1| Medicago truncatula mRNA for coatomer epsilon subunit (cope1 gene) Length = 870 Score = 44.1 bits (22), Expect = 0.50 Identities = 36/41 (87%) Strand = Plus / Plus Query: 89 ctcttnaacctgcgcaacctcttctacctcggcgcctacca 129 ||||| ||||| |||||| ||||||||||||||| ||||| Sbjct: 19 ctcttcaacctccgcaacaacttctacctcggcgcatacca 59
>gb|AY075627.1| Arabidopsis thaliana At2g34840/F19I3.7 mRNA, complete cds Length = 1129 Score = 44.1 bits (22), Expect = 0.50 Identities = 49/58 (84%) Strand = Plus / Plus Query: 195 tcgtcttccgctcctacatcgccctcggatcctaccagctggtgatcagcgagatcga 252 |||||||||| || |||||||||||||| ||| ||||| || ||||| |||||||| Sbjct: 196 tcgtcttccgatcttacatcgccctcggtagctatcagcttgttatcagtgagatcga 253 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 383 cgattgattgctggaattatatttatgcatga 414 |||||||||||||| ||||| || |||||||| Sbjct: 390 cgattgattgctggtattattttcatgcatga 421
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 254 tcgtcggcggcgacgtcgctgc 275 |||||||||||||||||||||| Sbjct: 28932343 tcgtcggcggcgacgtcgctgc 28932364
>gb|AC106742.3| Homo sapiens chromosome 16 clone RP11-1136G4, complete sequence Length = 145009 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 gaatggttgagtgattcagcca 362 |||||||||||||||||||||| Sbjct: 40373 gaatggttgagtgattcagcca 40352
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 157 gggcctcgacgccgacgccgcggccg 182 ||||||||||||||||| |||||||| Sbjct: 8902964 gggcctcgacgccgacggcgcggccg 8902989 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 163 cgacgccgacgccgcggccgagcgcg 188 |||||||| ||||||||||||||||| Sbjct: 4937907 cgacgccgtcgccgcggccgagcgcg 4937882
>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0060O17 Length = 180015 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 254 tcgtcggcggcgacgtcgctgc 275 |||||||||||||||||||||| Sbjct: 49880 tcgtcggcggcgacgtcgctgc 49901
>dbj|AK068606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157G23, full insert sequence Length = 1650 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 254 tcgtcggcggcgacgtcgctgc 275 |||||||||||||||||||||| Sbjct: 120 tcgtcggcggcgacgtcgctgc 141
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 235 ggtgatcagcgagatcgactcg 256 |||||||||||||||||||||| Sbjct: 497344 ggtgatcagcgagatcgactcg 497323
>gb|DQ182118.1| Uncultured bacterium clone SRP17 putative nitrite reductase (nirS) gene, partial cds Length = 410 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 gatcagcgagatcgactcgtc 258 ||||||||||||||||||||| Sbjct: 309 gatcagcgagatcgactcgtc 289
>gb|AC100212.8| Mus musculus chromosome 18, clone RP23-60D22, complete sequence Length = 225698 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 528 aactgaagatcatgcaacaaa 548 ||||||||||||||||||||| Sbjct: 30876 aactgaagatcatgcaacaaa 30856
>gb|BT014249.1| Lycopersicon esculentum clone 133451F, mRNA sequence Length = 1320 Score = 42.1 bits (21), Expect = 2.0 Identities = 92/116 (79%) Strand = Plus / Plus Query: 389 attgctggaattatatttatgcatgagcaagactacaacgaggctctcaagcacacacat 448 |||||||| ||| |||| ||||||||||| || ||||| || ||| | ||||| ||| || Sbjct: 417 attgctgggattgtattcatgcatgagcaggattacaatgaagctttgaagcatacaaat 476 Query: 449 actgggggaactctggacctgcatgcactgaacgtncagatcttccttaagatgca 504 |||| || || |||| ||||||| |||| || ||||| ||| |||||||||| Sbjct: 477 gctggagggacgatggaattgcatgctttgaatgtccagatattcattaagatgca 532
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 97 cctgcgcaacctcttctacct 117 ||||||||||||||||||||| Sbjct: 2146009 cctgcgcaacctcttctacct 2145989
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 171 acgccgcggccgagcgcgacg 191 ||||||||||||||||||||| Sbjct: 1816506 acgccgcggccgagcgcgacg 1816486
>emb|AL355885.4|CNS05TCW Human chromosome 14 DNA sequence BAC R-434O22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 174442 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 attgctggaattatatttatg 409 ||||||||||||||||||||| Sbjct: 142249 attgctggaattatatttatg 142269
>emb|AL121603.4|CNS01DS0 Human chromosome 14 DNA sequence BAC R-73E17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 141534 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 attgctggaattatatttatg 409 ||||||||||||||||||||| Sbjct: 26191 attgctggaattatatttatg 26211
>ref|XM_466314.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2316 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cgacgccgacgccgcggccg 182 |||||||||||||||||||| Sbjct: 1494 cgacgccgacgccgcggccg 1475
>ref|NM_193877.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1557 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 cggcggcgacgtcgctgcag 277 |||||||||||||||||||| Sbjct: 944 cggcggcgacgtcgctgcag 963
>gb|AY661566.1| Saccharopolyspora erythraea polyketide synthase gene cluster, complete sequence Length = 32299 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cgacgccgacgccgcggccg 182 |||||||||||||||||||| Sbjct: 20872 cgacgccgacgccgcggccg 20891
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cgccgcggccgagcgcgacg 191 |||||||||||||||||||| Sbjct: 2366287 cgccgcggccgagcgcgacg 2366306
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 276 aggccgtcaagctgctcgcgctct 299 |||||||| ||||||||||||||| Sbjct: 1705743 aggccgtcgagctgctcgcgctct 1705766
>ref|XM_849541.1| PREDICTED: Canis familiaris similar to TEA domain family member 4 isoform 1 (LOC611826), mRNA Length = 1669 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 34 acccaccccgtcgccggcagcgccccca 61 ||||||||||||||| ||||||||||| Sbjct: 939 acccaccccgtcgccctcagcgccccca 966
>gb|AC102384.8| Mus musculus chromosome 6, clone RP24-446I4, complete sequence Length = 150552 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 ctgacaagcaactgaagatc 538 |||||||||||||||||||| Sbjct: 65469 ctgacaagcaactgaagatc 65450
>emb|AL353666.11| Human DNA sequence from clone RP11-363O16 on chromosome 9, complete sequence Length = 63798 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 523 caagcaactgaagatcatgc 542 |||||||||||||||||||| Sbjct: 63696 caagcaactgaagatcatgc 63677
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 276 aggccgtcaagctgctcgcgctct 299 |||||||| ||||||||||||||| Sbjct: 3040602 aggccgtcgagctgctcgcgctct 3040625
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tcgacgccgacgccgcggcc 181 |||||||||||||||||||| Sbjct: 4761562 tcgacgccgacgccgcggcc 4761581
>gb|AC004238.3| Arabidopsis thaliana chromosome 2 clone F19I3 map ve016, complete sequence Length = 108484 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 383 cgattgattgctggaattatatttatgcatga 414 |||||||||||||| ||||| || |||||||| Sbjct: 31785 cgattgattgctggtattattttcatgcatga 31816 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 195 tcgtcttccgctcctacatcgccctcgg 222 |||||||||| || |||||||||||||| Sbjct: 31416 tcgtcttccgatcttacatcgccctcgg 31443
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cgccgacgccgcggccgagc 185 |||||||||||||||||||| Sbjct: 3536840 cgccgacgccgcggccgagc 3536821
>gb|AC006936.17|AC006936 Drosophila melanogaster, chromosome 3R, region 93E4-93E7, BAC clone BACR48I01, complete sequence Length = 170535 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 ctcgtcggcggcgacgtcgctgca 276 ||||||| |||||||||||||||| Sbjct: 27862 ctcgtcgacggcgacgtcgctgca 27839
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 276 aggccgtcaagctgctcgcgctct 299 |||||||| ||||||||||||||| Sbjct: 2189235 aggccgtcgagctgctcgcgctct 2189258
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 cgccgacgccgcggccgagcgcga 189 |||||||| ||||||||||||||| Sbjct: 2602883 cgccgacgtcgcggccgagcgcga 2602906
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cggcggcgacgtcgctgcag 277 |||||||||||||||||||| Sbjct: 15564591 cggcggcgacgtcgctgcag 15564572
>emb|BX324215.14| Zebrafish DNA sequence from clone DKEY-42L16 in linkage group 22, complete sequence Length = 207877 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 cagctggtgatcagcgagat 249 |||||||||||||||||||| Sbjct: 108644 cagctggtgatcagcgagat 108663
>gb|AC016132.4|AC016132 Drosophila melanogaster, chromosome 3R, region 93D-93D, BAC clone BACR34E13, complete sequence Length = 167475 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 ctcgtcggcggcgacgtcgctgca 276 ||||||| |||||||||||||||| Sbjct: 145027 ctcgtcgacggcgacgtcgctgca 145004
>dbj|AB186127.1| Oryza sativa (japonica cultivar-group) mRNA for NPH3, complete cds Length = 2885 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cgacgccgacgccgcggccg 182 |||||||||||||||||||| Sbjct: 1888 cgacgccgacgccgcggccg 1869
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 153 tcccgggcctcgacgccgacgccgcggc 180 ||||||| |||| ||||||||||||||| Sbjct: 3172851 tcccggggctcggcgccgacgccgcggc 3172878
>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020D05 Length = 158760 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cgacgccgacgccgcggccg 182 |||||||||||||||||||| Sbjct: 117557 cgacgccgacgccgcggccg 117576
>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0135D07 Length = 170587 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cgacgccgacgccgcggccg 182 |||||||||||||||||||| Sbjct: 157857 cgacgccgacgccgcggccg 157876
>dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1111C09 Length = 156393 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cggcggcgacgtcgctgcag 277 |||||||||||||||||||| Sbjct: 122100 cggcggcgacgtcgctgcag 122081
>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416G11 Length = 138858 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cggcggcgacgtcgctgcag 277 |||||||||||||||||||| Sbjct: 2488 cggcggcgacgtcgctgcag 2469
>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04 Length = 140723 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cgacgccgacgccgcggccg 182 |||||||||||||||||||| Sbjct: 64054 cgacgccgacgccgcggccg 64073
>dbj|AP006069.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0025F02 Length = 156545 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cgacgccgacgccgcggccg 182 |||||||||||||||||||| Sbjct: 10004 cgacgccgacgccgcggccg 10023
>emb|X62569.1|SEERYABS S.erythraea eryA gene for 6-deoxyerythronolyde B synthase II & III Length = 20444 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cgacgccgacgccgcggccg 182 |||||||||||||||||||| Sbjct: 8838 cgacgccgacgccgcggccg 8857
>gb|AC158407.1| Mus musculus BAC RP23-23E11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187033 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 ctgacaagcaactgaagatc 538 |||||||||||||||||||| Sbjct: 7464 ctgacaagcaactgaagatc 7483
>dbj|AK107582.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-E05, full insert sequence Length = 1801 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cgacgccgacgccgcggccg 182 |||||||||||||||||||| Sbjct: 995 cgacgccgacgccgcggccg 1014
>dbj|AK068106.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132B11, full insert sequence Length = 1010 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cgacgccgacgccgcggccg 182 |||||||||||||||||||| Sbjct: 423 cgacgccgacgccgcggccg 404
>emb|AL831726.11| Zebrafish DNA sequence from clone DKEY-49N23 in linkage group 22, complete sequence Length = 245697 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 cagctggtgatcagcgagat 249 |||||||||||||||||||| Sbjct: 226486 cagctggtgatcagcgagat 226505
>gb|AE003735.2| Drosophila melanogaster chromosome 3R, section 73 of 118 of the complete sequence Length = 255463 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 ctcgtcggcggcgacgtcgctgca 276 ||||||| |||||||||||||||| Sbjct: 29699 ctcgtcgacggcgacgtcgctgca 29676
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cgacgccgacgccgcggccg 182 |||||||||||||||||||| Sbjct: 44845 cgacgccgacgccgcggccg 44826
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cgacgccgacgccgcggccg 182 |||||||||||||||||||| Sbjct: 2727094 cgacgccgacgccgcggccg 2727113
>gb|M63677.1|SERERYAB S.erythraea second and third ORF's of eryA gene, complete cds Length = 20235 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cgacgccgacgccgcggccg 182 |||||||||||||||||||| Sbjct: 8811 cgacgccgacgccgcggccg 8830
>dbj|AB042114.1| Glycine max cope2 mRNA for epsilon2-COP, partial cds Length = 1223 Score = 40.1 bits (20), Expect = 7.8 Identities = 79/99 (79%) Strand = Plus / Plus Query: 424 caacgaggctctcaagcacacacatactgggggaactctggacctgcatgcactgaacgt 483 |||||| || ||||| ||||| || |||| ||||| |||||||||| || |||| || Sbjct: 354 caacgaagccctcaaacacaccaatgctggtggaaccatggacctgcacgcgttgaatgt 413 Query: 484 ncagatcttccttaagatgcaccgctcagattatgctga 522 |||||||| |||||||||| | || ||||||||||| Sbjct: 414 tcagatctttattaagatgcataggtcggattatgctga 452 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,577,838 Number of Sequences: 3902068 Number of extensions: 4577838 Number of successful extensions: 85198 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82066 Number of HSP's gapped (non-prelim): 3127 length of query: 576 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 553 effective length of database: 17,143,297,704 effective search space: 9480243630312 effective search space used: 9480243630312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)