ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd18m18 |
|---|---|
| Clone Library Name | barley_pub |
>SCO1_HUMAN (O75880) SCO1 protein homolog, mitochondrial precursor| Length = 301 Score = 159 bits (403), Expect = 5e-39 Identities = 75/152 (49%), Positives = 105/152 (69%), Gaps = 2/152 (1%) Frame = +2 Query: 14 GKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXXV-PVFISVDPE 190 G+ T+KD+LG+W L+YFGFTHCPD+CP+EL+KM + P+FIS+DPE Sbjct: 147 GERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPE 206 Query: 191 RDTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYMK-TEEEGSDYLVDHSIVMYL 367 RDT E + +YVKEF L+GLTGT +EV +VARAYRVYY ++E DY+VDH+I+MYL Sbjct: 207 RDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYL 266 Query: 368 MNPKMEFVKFFGKNYDEDTLAEGIIKEIREHK 463 + P EF+ +FG+N + +A I +R ++ Sbjct: 267 IGPDGEFLDYFGQNKRKGEIAASIATHMRPYR 298
>SCO1_YEAST (P23833) Protein SCO1, mitochondrial precursor| Length = 295 Score = 143 bits (361), Expect = 4e-34 Identities = 65/151 (43%), Positives = 96/151 (63%), Gaps = 2/151 (1%) Frame = +2 Query: 14 GKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXXVPVFISVDPER 193 G TEK+ LGK++++YFGF++CPDICPDEL K+ P+FI+ DP R Sbjct: 126 GNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPAR 185 Query: 194 DTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYM--KTEEEGSDYLVDHSIVMYL 367 D+ + +Y+ +FH ++GLTGT DEV+ + YRVY+ + G DYLVDHSI YL Sbjct: 186 DSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYL 245 Query: 368 MNPKMEFVKFFGKNYDEDTLAEGIIKEIREH 460 M+P+ +FV G+NYDE T + I++ ++ + Sbjct: 246 MDPEGQFVDALGRNYDEKTGVDKIVEHVKSY 276
>SCO2_HUMAN (O43819) SCO2 protein homolog, mitochondrial precursor| Length = 266 Score = 140 bits (352), Expect = 4e-33 Identities = 66/153 (43%), Positives = 100/153 (65%), Gaps = 2/153 (1%) Frame = +2 Query: 14 GKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXXV-PVFISVDPE 190 G+A + DF G+W L+YFGFTHCPDICPDEL+K+ V PVFI+VDPE Sbjct: 111 GRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPE 170 Query: 191 RDTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYY-MKTEEEGSDYLVDHSIVMYL 367 RD VE + YV++FH L+GLTG++ +V + + +YRVYY ++E DY+VDHSI +YL Sbjct: 171 RDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYL 230 Query: 368 MNPKMEFVKFFGKNYDEDTLAEGIIKEIREHKS 466 +NP F ++G++ + +++ + + + +S Sbjct: 231 LNPDGLFTDYYGRSRSAEQISDSVRRHMAAFRS 263
>SCO2_YEAST (P38072) Protein SCO2, mitochondrial precursor| Length = 301 Score = 139 bits (350), Expect = 7e-33 Identities = 64/152 (42%), Positives = 99/152 (65%), Gaps = 2/152 (1%) Frame = +2 Query: 11 DGKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXXVPVFISVDPE 190 +GK TE++ GK+++LYFGF+HCPDICP+EL ++ P+FIS DP Sbjct: 131 NGKPFTEENLKGKFSILYFGFSHCPDICPEELDRLTYWISELDDKDHIKIQPLFISCDPA 190 Query: 191 RDTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYM--KTEEEGSDYLVDHSIVMY 364 RDT + + +Y+ +FH +IGLTGT D+V+ V + Y+VY+ + + DYLVDHSI Y Sbjct: 191 RDTPDVLKEYLSDFHPAIIGLTGTYDQVKSVCKKYKVYFSTPRDVKPNQDYLVDHSIFFY 250 Query: 365 LMNPKMEFVKFFGKNYDEDTLAEGIIKEIREH 460 L++P+ +F+ G+NYDE + E I ++I+ + Sbjct: 251 LIDPEGQFIDALGRNYDEQSGLEKIREQIQAY 282
>SCO1_SCHPO (O42899) Protein sco1| Length = 263 Score = 135 bits (339), Expect = 1e-31 Identities = 59/145 (40%), Positives = 93/145 (64%), Gaps = 3/145 (2%) Frame = +2 Query: 14 GKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXXVPVFISVDPER 193 G VT+ DF GK++L+YFGFT CPDICPDEL KM P+FI+ DP R Sbjct: 108 GNRVTDNDFKGKFSLIYFGFTRCPDICPDELDKMSAAIDIVNNVVGDVVYPIFITCDPAR 167 Query: 194 DTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYY---MKTEEEGSDYLVDHSIVMY 364 D +++ +Y+++F+ ++GLTG+ +E++ + + +RVY+ + + DYLVDHS+ Y Sbjct: 168 DPPQEMAEYLEDFNPKIVGLTGSYEEIKDICKKFRVYFSTPKNIDPKKDDYLVDHSVFFY 227 Query: 365 LMNPKMEFVKFFGKNYDEDTLAEGI 439 LM+P+ +F++ FG+N + LA I Sbjct: 228 LMDPEGKFIEVFGRNSTSEDLARAI 252
>SCO22_RICPR (Q9ZCW7) SCO2-like protein RP587| Length = 205 Score = 99.0 bits (245), Expect = 1e-20 Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 2/132 (1%) Frame = +2 Query: 11 DGKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXXVPVFISVDPE 190 +G+ G +L+YFGFT CPDICP L K+ +PVFI+VDP+ Sbjct: 59 NGEIFNSDKLRGHLSLIYFGFTSCPDICPTSLNKITNIVEILHQNKIDI-IPVFITVDPK 117 Query: 191 RDTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYMKTEEEGSD--YLVDHSIVMY 364 RDT E + +Y+K FH I LTG +++ V ++V+Y + + D Y++DHS Y Sbjct: 118 RDTPEVLKEYIKNFHPKFISLTGNEHQIKDVTDKFKVFYARVNSDNDDQNYMIDHSSFTY 177 Query: 365 LMNPKMEFVKFF 400 L++ ++K F Sbjct: 178 LIDKNGRYMKHF 189
>SCO22_RICCN (Q92H76) SCO2-like protein RC0895| Length = 205 Score = 97.4 bits (241), Expect = 3e-20 Identities = 46/132 (34%), Positives = 75/132 (56%), Gaps = 2/132 (1%) Frame = +2 Query: 11 DGKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXXVPVFISVDPE 190 +G+ G +L+YFGFT CPDICP L KM +PVFI++DP+ Sbjct: 59 NGEIFNSDKLKGNLSLIYFGFTSCPDICPTSLNKMTEIVEILNKHKIDI-LPVFITIDPK 117 Query: 191 RDTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYMKT--EEEGSDYLVDHSIVMY 364 RDT + +Y+K FH IGLTG +++ V ++V+Y + +++ +Y++DHS Y Sbjct: 118 RDTPIALKEYLKHFHPKFIGLTGNEQQIKDVTDKFKVFYARVHGDDDDPNYMLDHSSFTY 177 Query: 365 LMNPKMEFVKFF 400 L++ +++K F Sbjct: 178 LIDANGKYLKHF 189
>SENC_RHOCA (Q52720) Protein senC| Length = 219 Score = 90.1 bits (222), Expect = 5e-18 Identities = 47/142 (33%), Positives = 76/142 (53%) Frame = +2 Query: 14 GKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXXVPVFISVDPER 193 G VT++D + K +L+YFG+++CPD+CP + + PVFISVD R Sbjct: 61 GATVTDRDVITKPSLVYFGYSYCPDVCPIDSTR-NAAAVDLLAERGHDVTPVFISVDAAR 119 Query: 194 DTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYMKTEEEGSDYLVDHSIVMYLMN 373 DT + ++ +IGLTGT +++ +AYR YY+ LVDHS YLM Sbjct: 120 DTPPVLTEFTDLMSPKMIGLTGTPEQIDAAVKAYRAYYLIRNPGDPATLVDHSTQTYLM- 178 Query: 374 PKMEFVKFFGKNYDEDTLAEGI 439 K+ F+ F+ ++ + +A+ + Sbjct: 179 -KLGFLDFYDRDATPEMVADSV 199
>SCOP_PSEST (P47206) Putative copper-binding protein| Length = 204 Score = 80.5 bits (197), Expect = 4e-15 Identities = 38/111 (34%), Positives = 60/111 (54%) Frame = +2 Query: 44 GKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXXVPVFISVDPERDTVEQVHDYV 223 G+W +L+FGFT CPDICP L +M V I+ DP RDT +Q+ Y+ Sbjct: 65 GRWHILFFGFTACPDICPTTLSEMRRLFGQLPAETREQLQLVLITADPARDTPQQLKTYL 124 Query: 224 KEFHQDLIGLTGTSDEVRKVARAYRVYYMKTEEEGSDYLVDHSIVMYLMNP 376 + IGLTG ++++++++A + ++ E DY V HS + L+ P Sbjct: 125 SYYRAGFIGLTGNMEQLQRLSKALGLPFVPATETEGDYSVSHSGNLALVGP 175
>SCO21_RICPR (Q9ZEB4) SCO2-like protein RP031| Length = 191 Score = 55.8 bits (133), Expect = 1e-07 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Frame = +2 Query: 14 GKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXXVPVFISVDPER 193 GK + G +L+YFG T+ + ++ K VFI++DPE Sbjct: 59 GKKFDSTNLQGYLSLIYFGTTY--SLYDNQALKRVEDIIKILKRENILLQVVFITLDPEH 116 Query: 194 DTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYMKT--EEEGSDYLVDHSIVMYL 367 DT E + Y+++ + IGLTG ++ ++A+ ++V+Y + + ++Y + HS +YL Sbjct: 117 DTSEVLKKYLEKIDSNFIGLTGRVQDIEQLAQQFKVFYTSKIFDVKTNEYALQHSNFVYL 176 Query: 368 MN 373 ++ Sbjct: 177 IS 178
>SCO21_RICCN (Q92JM5) SCO2-like protein RC0042| Length = 199 Score = 53.9 bits (128), Expect = 4e-07 Identities = 32/133 (24%), Positives = 67/133 (50%), Gaps = 3/133 (2%) Frame = +2 Query: 11 DGKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXXVPVFISVDPE 190 +GK G +L+YFG T+ + ++ K VFI++D E Sbjct: 61 EGKKFDSTHLQGHLSLIYFGTTY--SLYDNQTLKRVEDIIKILKKENILVQVVFITLDSE 118 Query: 191 RDTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYMKT---EEEGSDYLVDHSIVM 361 DT E + Y+++ + IGLTG +++ ++A ++V++ + + + + Y + HS + Sbjct: 119 HDTSEVLKKYLEKIDDNFIGLTGRVEDIEQLADQFKVFFYTSKIFDVKTNKYELQHSNFV 178 Query: 362 YLMNPKMEFVKFF 400 YL++ + +F+K + Sbjct: 179 YLISSQGKFLKHY 191
>YPMQ_BACSU (P54178) Hypothetical protein ypmQ| Length = 193 Score = 42.4 bits (98), Expect = 0.001 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 5/153 (3%) Frame = +2 Query: 11 DGKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXXVPVFISVDPE 190 DGK V+ + G+ L F FT+C ICP M + + SVDPE Sbjct: 41 DGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAGNIDVRI-ISFSVDPE 99 Query: 191 RDTVEQVHDYVKEFHQDLIG---LTGTS-DEVRKVA-RAYRVYYMKTEEEGSDYLVDHSI 355 D +Q+ + + LTG S E+ + A ++++ K EG D ++ H Sbjct: 100 NDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKK--PEGEDQVI-HQS 156 Query: 356 VMYLMNPKMEFVKFFGKNYDEDTLAEGIIKEIR 454 YL+ P + +K + N E+T + II +++ Sbjct: 157 SFYLVGPDGKVLKDY--NGVENTPYDDIISDVK 187
>PYRC_SULAC (O08357) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 389 Score = 33.9 bits (76), Expect = 0.43 Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 12/99 (12%) Frame = +2 Query: 185 PERDTVEQVHDYVKEFH----QDLIGLTGTSDEVRKVAR----AYRVYYMKTEEEGSDYL 340 P +T E++ + ++EF D +G S EV ++ + Y++Y E+E + Y+ Sbjct: 88 PYINTPERIKERLREFQLYSRTDYGIYSGVSKEVEEIDKLPIAGYKIYPEDLEKEETRYV 147 Query: 341 VDHSIVMYLMNPKMEFV----KFFGKNYDEDTLAEGIIK 445 ++ S + +++P+M FV + ++Y +T A ++K Sbjct: 148 LEKSKKLKILHPEMPFVSKIERSLRRSYWMETAAINLVK 186
>AHPC_STAES (Q8CMQ2) Alkyl hydroperoxide reductase subunit C (EC 1.11.1.15)| (Peroxiredoxin) (Thioredoxin peroxidase) Length = 189 Score = 30.8 bits (68), Expect = 3.6 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +2 Query: 5 KXDGKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKM 115 K + K VT++DF G W ++ F +CP EL+ + Sbjct: 20 KDEFKEVTQEDFKGSWNVVCFYPADFSFVCPTELEDL 56
>AHPC_STAEQ (Q5HRY1) Alkyl hydroperoxide reductase subunit C (EC 1.11.1.15)| (Peroxiredoxin) (Thioredoxin peroxidase) Length = 189 Score = 30.8 bits (68), Expect = 3.6 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +2 Query: 5 KXDGKAVTEKDFLGKWTLLYFGFTHCPDICPDELQKM 115 K + K VT++DF G W ++ F +CP EL+ + Sbjct: 20 KDEFKEVTQEDFKGSWNVVCFYPADFSFVCPTELEDL 56
>DAD2_ASHGO (Q759Q6) DASH complex subunit DAD2 (Outer kinetochore protein DAD2)| Length = 111 Score = 30.8 bits (68), Expect = 3.6 Identities = 23/56 (41%), Positives = 32/56 (57%) Frame = -1 Query: 406 LAEELDELHFRVHQVHDN*MINKVVRTLLLCLHIVDSISTSNLSHLIRGTS*SYEI 239 L +LDEL +VHQ+HDN V L I++SIS + LS L++ T YE+ Sbjct: 27 LKAQLDELSKQVHQMHDN--AECVSSVLKNWDSILNSISQATLS-LLQYTENDYEV 79
>TDX1_BRUMA (P48822) Thioredoxin peroxidase 1 (EC 1.11.1.15) (Peroxiredoxin 1)| (Thioredoxin-dependent peroxide reductase 1) (Thiol-specific antioxidant protein 1) (Bm-TPx-1) Length = 229 Score = 30.8 bits (68), Expect = 3.6 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +2 Query: 11 DGKAVTEKDFLGKWTLLYFGFTHCPDICPDEL 106 D K ++ KD+ GKW +L+F +CP E+ Sbjct: 51 DFKTISMKDYKGKWLILFFYPLDFTFVCPTEI 82
>MURC_STRR6 (Q8DP40) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 444 Score = 30.0 bits (66), Expect = 6.2 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +2 Query: 194 DTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYMKTEEEGSDYL 340 D +DY K+ + L + G E+RK+ +YY E EG+D++ Sbjct: 186 DVFNAFNDYAKQITKGLF-VYGEDAELRKITSDAPIYYYGFEAEGNDFV 233
>MURC_STRPN (Q97PS8) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 444 Score = 30.0 bits (66), Expect = 6.2 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +2 Query: 194 DTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYMKTEEEGSDYL 340 D +DY K+ + L + G E+RK+ +YY E EG+D++ Sbjct: 186 DVFNAFNDYAKQITKGLF-VYGEDAELRKITSDAPIYYYGFEAEGNDFV 233
>TDX1_CAEEL (Q21824) Probable peroxiredoxin (EC 1.11.1.15) (Thioredoxin| peroxidase) (Thioredoxin-dependent peroxide reductase) (Thiol-specific antioxidant protein) Length = 226 Score = 29.6 bits (65), Expect = 8.1 Identities = 10/32 (31%), Positives = 20/32 (62%) Frame = +2 Query: 11 DGKAVTEKDFLGKWTLLYFGFTHCPDICPDEL 106 D K ++++D+ GKW +++F +CP E+ Sbjct: 51 DFKVISDQDYKGKWLVMFFYPLDFTFVCPTEI 82
>R20K_CLOPA (P23161) Putative peroxiredoxin in rubredoxin operon (EC 1.11.1.15)| (Thioredoxin peroxidase) (ORF C) Length = 178 Score = 29.6 bits (65), Expect = 8.1 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 3/111 (2%) Frame = +2 Query: 5 KXDGKAVTEK---DFLGKWTLLYFGFTHCPDICPDELQKMXXXXXXXXXXXXXXXVPVFI 175 K DG+ TE D+ GKW +++F +CP E+ + + Sbjct: 18 KGDGRGFTEVKLGDYKGKWLVMFFYPLDFTFVCPTEITGFSKRAEEFRDLKAEL---LAV 74 Query: 176 SVDPERDTVEQVHDYVKEFHQDLIGLTGTSDEVRKVARAYRVYYMKTEEEG 328 S D + ++ +K+ I SD+ +V+ Y + + EEEG Sbjct: 75 SCDSQYSHETWINQDIKQGGLGKINFPIASDKTTEVSTKYGI---QIEEEG 122
>SPL15_ARATH (Q9M2Q6) Squamosa promoter-binding-like protein 15| Length = 354 Score = 29.6 bits (65), Expect = 8.1 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -3 Query: 383 PFSGSSST*QLNDQQGSQNPPPLSSYSRLDKHEQPFSPHQRY 258 P SG S +D+ PPP+S+ H+ P S HQ+Y Sbjct: 246 PSSGFDSMISFSDKVTMAQPPPIST------HQPPISTHQQY 281 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,676,654 Number of Sequences: 219361 Number of extensions: 1600868 Number of successful extensions: 4844 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4705 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4829 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
