Clone Information

BLAST Search Result

Clone Name	basd19b15
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CHMP5_BRARE (Q7T339) Charged multivesicular body protein 5 (Chro...	145	7e-35
2	CHMP5_PONPY (Q5RBR3) Charged multivesicular body protein 5 (Chro...	144	3e-34
3	CHMP5_HUMAN (Q9NZZ3) Charged multivesicular body protein 5 (Chro...	144	3e-34
4	CHMP5_RAT (Q4QQV8) Charged multivesicular body protein 5 (Chroma...	143	4e-34
5	CHMP5_MOUSE (Q9D7S9) Charged multivesicular body protein 5 (Chro...	143	4e-34
6	CHMP5_XENTR (Q5FW29) Charged multivesicular body protein 5 (Chro...	140	3e-33
7	CHMP5_XENLA (Q6DD52) Charged multivesicular body protein 5 (Chro...	139	8e-33
8	VPS60_YEAST (Q03390) Vacuolar protein sorting-associated protein...	75	1e-13
9	SNF7_KLULA (Q6CJL0) Vacuolar sorting protein SNF7 (Vacuolar prot...	57	3e-08
10	SNF7_CANGA (Q6FW96) Vacuolar sorting protein SNF7 (Vacuolar prot...	51	3e-06
11	SNF7_CRYNE (Q5KL29) Vacuolar sorting protein SNF7 (Vacuolar prot...	50	4e-06
12	SNF7_ASHGO (Q753W3) Vacuolar sorting protein SNF7 (Vacuolar prot...	42	0.002
13	SNF7_DEBHA (Q6BSH2) Vacuolar sorting protein SNF7 (Vacuolar prot...	39	0.009
14	SNF7_CANAL (Q5ABD0) Vacuolar sorting protein SNF7 (Vacuolar prot...	39	0.015
15	CHM4B_XENTR (Q6GL11) Charged multivesicular body protein 4b (Chr...	37	0.034
16	CHM4B_XENLA (Q5XGW6) Charged multivesicular body protein 4b (Chr...	37	0.045
17	SNF7_YEAST (P39929) Vacuolar sorting protein SNF7 (DOA4-independ...	37	0.059
18	CHM2A_XENTR (Q6DFS6) Charged multivesicular body protein 2a (Chr...	35	0.13
19	CHM2A_CHICK (Q5ZHN1) Charged multivesicular body protein 2a (Chr...	34	0.29
20	CHM2A_XENLA (Q6IP52) Charged multivesicular body protein 2a (Chr...	34	0.38
21	KINH_DROME (P17210) Kinesin heavy chain	33	0.65
22	ING5_MOUSE (Q9D8Y8) Inhibitor of growth protein 5	33	0.65
23	YHGE_BACSU (P32399) Hypothetical protein yhgE (ORFB)	33	0.85
24	KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C...	33	0.85
25	DNAK_WOLTR (Q5GSE1) Chaperone protein dnaK (Heat shock protein 7...	33	0.85
26	ZYG12_CAEEL (Q23529) Zygote defective protein 12	32	1.1
27	OSBP1_RABIT (P16258) Oxysterol-binding protein 1	32	1.1
28	MYH3_CHICK (P02565) Myosin heavy chain, fast skeletal muscle, em...	32	1.1
29	GRPE_METTH (O27350) Protein grpE (HSP-70 cofactor)	32	1.4
30	CUL6_CAEEL (Q21346) Cullin-6	32	1.4
31	RDRP_RCNMV (P22956) Putative RNA-directed RNA polymerase (EC 2.7...	32	1.4
32	ING5_HUMAN (Q8WYH8) Inhibitor of growth protein 5 (p28ING5)	32	1.4
33	DNAK_WOLPM (Q73GL7) Chaperone protein dnaK (Heat shock protein 7...	32	1.9
34	CCD45_MOUSE (Q8BVV7) Coiled-coil domain-containing protein 45	31	2.5
35	SMC4_CAEEL (Q20060) Structural maintenance of chromosome 4 (Prot...	31	3.2
36	MYO2_SCHPO (Q9USI6) Myosin type-2 heavy chain 1 (Myosin type II ...	31	3.2
37	YQ56_CAEEL (Q09252) Hypothetical protein C16C10.6	30	4.2
38	BHLH3_HUMAN (Q9C0J9) Class B basic helix-loop-helix protein 3 (b...	30	4.2
39	IF5_PHAVU (P48724) Eukaryotic translation initiation factor 5 (e...	30	4.2
40	IF5Y_ARATH (Q9C8F1) Probable eukaryotic translation initiation f...	30	5.5
41	CCD46_MOUSE (Q5PR68) Coiled coil domain containing protein 46	30	5.5
42	YCEH_BACSU (O34833) Hypothetical protein yceH	30	5.5
43	ING3_HUMAN (Q9NXR8) Inhibitor of growth protein 3 (p47ING3 protein)	30	5.5
44	41_CANFA (Q6Q7P4) Protein 4.1 (Band 4.1) (P4.1) (4.1R)	30	5.5
45	RAD50_PYRFU (P58301) DNA double-strand break repair rad50 ATPase	30	5.5
46	MYH3_RAT (P12847) Myosin heavy chain, fast skeletal muscle, embr...	30	5.5
47	MYH3_HUMAN (P11055) Myosin heavy chain, fast skeletal muscle, em...	30	5.5
48	ING3_MOUSE (Q8VEK6) Inhibitor of growth protein 3 (p47ING3 protein)	30	5.5
49	CAPP_PSEPK (Q88MR4) Phosphoenolpyruvate carboxylase (EC 4.1.1.31...	30	7.2
50	NCAP_MACHU (P26578) Nucleocapsid protein (Nucleoprotein)	30	7.2
51	YNF0_YEAST (P53952) Hypothetical 31.4 kDa protein in COX5A-ALG11...	30	7.2
52	SYS_LACJO (Q74HZ5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--...	30	7.2
53	UTRO_HUMAN (P46939) Utrophin (Dystrophin-related protein 1) (DRP...	30	7.2
54	ESAA_STAAW (Q8NYF5) Protein esaA	30	7.2
55	ESAA_STAAU (P0C049) Protein esaA	30	7.2
56	ESAA_STAAS (Q6GCI9) Protein esaA	30	7.2
57	ESAA_STAAR (Q6GK28) Protein esaA	30	7.2
58	ESAA_STAAN (Q7A7S3) Protein esaA	30	7.2
59	ESAA_STAAM (Q99WU3) Protein esaA	30	7.2
60	ESAA_STAAC (Q5HJ90) Protein esaA	30	7.2
61	KGUA_MYCPU (Q98PN5) Guanylate kinase (EC 2.7.4.8) (GMP kinase)	30	7.2
62	SYT_LEIXX (Q6AFC3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threon...	30	7.2
63	OCLN_PONPY (Q5RFS5) Occludin	25	9.0
64	CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-ch...	29	9.4
65	ARI3A_HUMAN (Q99856) AT-rich interactive domain-containing prote...	29	9.4
66	SPAA_STRDO (P21979) Cell surface antigen I/II precursor	29	9.4
67	MYSS_CHICK (P13538) Myosin heavy chain, skeletal muscle, adult	29	9.4
68	MYH6_MOUSE (Q02566) Myosin heavy chain, cardiac muscle alpha iso...	29	9.4
69	MYH4_RABIT (Q28641) Myosin-4 (Myosin heavy chain, skeletal muscl...	29	9.4
70	TIG_STRMU (Q8CWZ6) Trigger factor (TF)	29	9.4
71	SYE_PROMM (Q7TUT7) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta...	29	9.4
72	RT28_YEAST (P21771) 40S ribosomal protein S28, mitochondrial pre...	29	9.4
73	MYH1_HUMAN (P12882) Myosin-1 (Myosin heavy chain, skeletal muscl...	29	9.4
74	BRU1_ARATH (Q6Q4D0) Protein BRUSHY 1 (Protein TONSOKU) (Protein ...	29	9.4

>CHMP5_BRARE (Q7T339) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 220

 Score =  145 bits (367), Expect = 7e-35
 Identities = 65/145 (44%), Positives = 103/145 (71%)
 Frame = +3

Query: 174 MKKIFGAKKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEA 353
           M +IFG  K + PPP++ D    +  R ++VD+KI +LDAEL +YK+Q+KK R GP++  
Sbjct: 1   MNRIFGRGKPKGPPPNLTDCISGVDSRAESVDKKIARLDAELMKYKDQMKKMRDGPSKNM 60

Query: 354 VKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMM 533
           VK +AMR+LKQ++MYEGQRD L  Q++N++Q  +  + +KD + T+ AMK   KE+K   
Sbjct: 61  VKQKAMRVLKQKRMYEGQRDQLMQQSFNMEQANYTIQTLKDTKTTVEAMKIGAKEMKKAY 120

Query: 534 KTVRIEDIDSMQDEMMDLMDVSNEI 608
           K V+I+ I+ +QD++ D+M+ +NE+
Sbjct: 121 KNVKIDQIEDLQDQLEDMMEDANEV 145

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>CHMP5_PONPY (Q5RBR3) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score =  144 bits (362), Expect = 3e-34
 Identities = 65/145 (44%), Positives = 102/145 (70%)
 Frame = +3

Query: 174 MKKIFGAKKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEA 353
           M ++FG  K + PPPS+ D    +  R +++D+KI +LDAEL +YK+QIKK R GPA+  
Sbjct: 1   MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM 60

Query: 354 VKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMM 533
           VK +A+R+LKQ++MYE QRD L  Q++N++Q  +  + +KD + T+ AMK   KE+K   
Sbjct: 61  VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120

Query: 534 KTVRIEDIDSMQDEMMDLMDVSNEI 608
           K V+I+ I+ +QD++ D+M+ +NEI
Sbjct: 121 KQVKIDQIEDLQDQLEDMMEDANEI 145

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>CHMP5_HUMAN (Q9NZZ3) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5) (Vacuolar protein sorting 60) (Vps60)
           (hVps60) (SNF7 domain-containing protein 2)
          Length = 219

 Score =  144 bits (362), Expect = 3e-34
 Identities = 65/145 (44%), Positives = 102/145 (70%)
 Frame = +3

Query: 174 MKKIFGAKKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEA 353
           M ++FG  K + PPPS+ D    +  R +++D+KI +LDAEL +YK+QIKK R GPA+  
Sbjct: 1   MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM 60

Query: 354 VKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMM 533
           VK +A+R+LKQ++MYE QRD L  Q++N++Q  +  + +KD + T+ AMK   KE+K   
Sbjct: 61  VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120

Query: 534 KTVRIEDIDSMQDEMMDLMDVSNEI 608
           K V+I+ I+ +QD++ D+M+ +NEI
Sbjct: 121 KQVKIDQIEDLQDQLEDMMEDANEI 145

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>CHMP5_RAT (Q4QQV8) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score =  143 bits (360), Expect = 4e-34
 Identities = 65/145 (44%), Positives = 101/145 (69%)
 Frame = +3

Query: 174 MKKIFGAKKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEA 353
           M + FG  K + PPPS+ D    +  R +++D+KI +LDAEL +YK+QIKK R GPA+  
Sbjct: 1   MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM 60

Query: 354 VKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMM 533
           VK +A+R+LKQ++MYE QRD L  Q++N++Q  +  + +KD + T+ AMK   KE+K   
Sbjct: 61  VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120

Query: 534 KTVRIEDIDSMQDEMMDLMDVSNEI 608
           K V+I+ I+ +QD++ D+M+ +NEI
Sbjct: 121 KEVKIDQIEDLQDQLEDMMEDANEI 145

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>CHMP5_MOUSE (Q9D7S9) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5) (SNF7 domain-containing protein 2)
          Length = 219

 Score =  143 bits (360), Expect = 4e-34
 Identities = 65/145 (44%), Positives = 101/145 (69%)
 Frame = +3

Query: 174 MKKIFGAKKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEA 353
           M + FG  K + PPPS+ D    +  R +++D+KI +LDAEL +YK+QIKK R GPA+  
Sbjct: 1   MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM 60

Query: 354 VKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMM 533
           VK +A+R+LKQ++MYE QRD L  Q++N++Q  +  + +KD + T+ AMK   KE+K   
Sbjct: 61  VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120

Query: 534 KTVRIEDIDSMQDEMMDLMDVSNEI 608
           K V+I+ I+ +QD++ D+M+ +NEI
Sbjct: 121 KEVKIDQIEDLQDQLEDMMEDANEI 145

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>CHMP5_XENTR (Q5FW29) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score =  140 bits (353), Expect = 3e-33
 Identities = 62/145 (42%), Positives = 102/145 (70%)
 Frame = +3

Query: 174 MKKIFGAKKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEA 353
           M ++FG  K + PP ++ D    +  R +++D+KI +LDAEL +YK+Q+KK R GP++  
Sbjct: 1   MNRLFGKSKPKVPPSTLTDCISNVDSRSESIDKKISRLDAELVKYKDQMKKMREGPSKNM 60

Query: 354 VKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMM 533
           VK +A+R+LKQ++MYE QRD L  Q++N++Q  +A + +KD + T+ AMK   KE+K   
Sbjct: 61  VKQKALRVLKQKRMYEQQRDNLNQQSFNMEQTNYAIQSLKDTKTTVDAMKVGAKEMKKAY 120

Query: 534 KTVRIEDIDSMQDEMMDLMDVSNEI 608
           K V+I+ I+ +QD++ D+M+ +NEI
Sbjct: 121 KQVKIDQIEDLQDQLEDMMENANEI 145

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>CHMP5_XENLA (Q6DD52) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score =  139 bits (349), Expect = 8e-33
 Identities = 62/145 (42%), Positives = 102/145 (70%)
 Frame = +3

Query: 174 MKKIFGAKKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEA 353
           M +IFG  K + PPP++ D    +  R +++++KI +LDAEL +YK+Q+KK R GP++  
Sbjct: 1   MNRIFGKSKPKVPPPTLTDCITNVDGRAESIEKKISRLDAELIKYKDQMKKMREGPSKNM 60

Query: 354 VKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMM 533
           VK +A+R+LKQ++MYE QRD L  Q++N++Q  +  + +KD + T+ AMK   KE+K   
Sbjct: 61  VKQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTIQTLKDTKTTVDAMKVGAKEMKKAY 120

Query: 534 KTVRIEDIDSMQDEMMDLMDVSNEI 608
           K V+I+ I+ +QD++ D+M+ +NEI
Sbjct: 121 KQVKIDQIEDLQDQLEDMMENANEI 145

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>VPS60_YEAST (Q03390) Vacuolar protein sorting-associated protein VPS60|
          Length = 262

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 36/150 (24%), Positives = 81/150 (54%), Gaps = 5/150 (3%)
 Frame = +3

Query: 174 MKKIFGAKKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKT-----RPG 338
           M +IFG    +     +Q++   + +   ++  +I +LD ++A+   Q++       R  
Sbjct: 34  MNRIFGYGNKKSHDQLLQESNQSMNQAQQSLSNRISQLDTQIAQLNFQLQNIQKNLQRSN 93

Query: 339 PAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKE 518
             Q +++ +A++IL +RK  E  +D L +Q++++ Q    ++ +++   T+ A+K  N  
Sbjct: 94  NKQPSLRKQALKILNKRKQLENMKDSLDSQSWSMTQAQLTNDNLQNTMITINALKQTNNA 153

Query: 519 LKGMMKTVRIEDIDSMQDEMMDLMDVSNEI 608
           +K     + I+ +  MQDEM+DL++  +E+
Sbjct: 154 MKAQYGKINIDKLQDMQDEMLDLIEQGDEL 183

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>SNF7_KLULA (Q6CJL0) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 232

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
 Frame = +3

Query: 186 FGAKKSQD--PPPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEAVK 359
           FG  K Q   P  +I D  + I      +++K   L  ++ + ++  KK+     Q   K
Sbjct: 6   FGTSKQQKELPKKAIVDLREHI----QLLNKKQAHLQTQIDQQQQLAKKS----LQSGNK 57

Query: 360 ARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKT 539
             A   LK++K+YE Q D L +Q  +LDQ  ++ E      +T+ AMK     +K + K 
Sbjct: 58  NNAKTYLKKKKLYESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMKNIHKG 117

Query: 540 VRIEDIDSMQDEMMDLMDVSNEI 608
           + ++ +D   DE+ + ++++ EI
Sbjct: 118 LDLDKVDDTMDEIREQVELNQEI 140

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>SNF7_CANGA (Q6FW96) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 228

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 28/84 (33%), Positives = 46/84 (54%)
 Frame = +3

Query: 357 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 536
           K  A   LK++K+YEGQ   L +Q  +L+Q  F+ E      +TM AMK   K +K +  
Sbjct: 58  KTMAKNALKKKKVYEGQLVKLESQMDSLEQQLFSIESANLNLETMRAMKQGAKAMKSIHS 117

Query: 537 TVRIEDIDSMQDEMMDLMDVSNEI 608
            + I+ +D   DE+ + +++  EI
Sbjct: 118 GLDIDRVDETMDEIREQVELGEEI 141

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>SNF7_CRYNE (Q5KL29) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 220

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 31/110 (28%), Positives = 54/110 (49%)
 Frame = +3

Query: 279 KKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFA 458
           KK +    + +E++KK +        K  AM  L+Q+K +E + D +      L+    A
Sbjct: 34  KKEEFLQKKIEEEMKKAKANATGN--KRLAMAALRQKKAHENELDRIAGTRLTLETQVNA 91

Query: 459 SEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEI 608
            E      +TM AMK     LKG+   +  E +D+  D++ + MD++N+I
Sbjct: 92  IESANLNAETMVAMKKGADALKGIHSNLTAEGVDATMDKIREQMDLTNDI 141

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>SNF7_ASHGO (Q753W3) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 237

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 23/84 (27%), Positives = 44/84 (52%)
 Frame = +3

Query: 357 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 536
           K  A   LK++K++E Q   +  Q  +L+Q  ++ E      +TM AMK     +K + +
Sbjct: 59  KNMAKAALKRKKVFESQLLKIDKQVDSLEQQLYSIENANLNLETMKAMKQGASAMKHIHE 118

Query: 537 TVRIEDIDSMQDEMMDLMDVSNEI 608
            + +E +D   DE+ + +++  EI
Sbjct: 119 GLDVERVDETMDEIREQVELGEEI 142

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>SNF7_DEBHA (Q6BSH2) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 22/84 (26%), Positives = 45/84 (53%)
 Frame = +3

Query: 357 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 536
           KA A   LK++K YE     + NQ  +L+    + EG     +TM AMK   + +K +  
Sbjct: 57  KALAKNALKRKKGYEANLMKIENQIDSLETQLTSIEGANLNLETMKAMKQGAQAMKQIHG 116

Query: 537 TVRIEDIDSMQDEMMDLMDVSNEI 608
              ++ +++  D++ + +++++EI
Sbjct: 117 EYDVDKVENTMDDIREQVELADEI 140

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>SNF7_CANAL (Q5ABD0) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 22/81 (27%), Positives = 41/81 (50%)
 Frame = +3

Query: 366 AMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVR 545
           A   LK++K YE     + NQ   L+    + EG     +TM AMK   K +K +     
Sbjct: 61  AKSALKRKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQGAKAMKQIHGEYD 120

Query: 546 IEDIDSMQDEMMDLMDVSNEI 608
           ++ ++   DE+ + +++++EI
Sbjct: 121 VDKVEDTMDEIREQVELADEI 141

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>CHM4B_XENTR (Q6GL11) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 222

 Score = 37.4 bits (85), Expect = 0.034
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 4/147 (2%)
 Frame = +3

Query: 180 KIFGAKKSQDPPPSIQDATDRIYKRGDTVDEKI----KKLDAELARYKEQIKKTRPGPAQ 347
           K+FG        PS Q+A  ++    + + +K     KK++ EL   K+   K +   A 
Sbjct: 6   KLFGTGGKGAKGPSPQEAIQKLRDTEEMLTKKQEFLEKKIEQELVTAKKHGTKNKRA-AL 64

Query: 348 EAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKG 527
           +A+K R  R  KQ    +G    +  Q   L+     +E +K+      AMKAA+  +  
Sbjct: 65  QALK-RKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMD- 122

Query: 528 MMKTVRIEDIDSMQDEMMDLMDVSNEI 608
                 IE +D +  ++ D  +++ EI
Sbjct: 123 ------IEKVDELMQDIADQQELAQEI 143

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>CHM4B_XENLA (Q5XGW6) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 222

 Score = 37.0 bits (84), Expect = 0.045
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 4/147 (2%)
 Frame = +3

Query: 180 KIFGAKKSQDPPPSIQDATDRIYKRGDTVDEKI----KKLDAELARYKEQIKKTRPGPAQ 347
           K+FG        PS Q+A  ++    + + +K     KK++ EL   K+   K +   A 
Sbjct: 6   KLFGTGGKGAKGPSPQEAIQKLRDTEEMLAKKQEFLEKKIEQELVTAKKHGTKNKRA-AL 64

Query: 348 EAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKG 527
           +A+K R  R  KQ    +G    +  Q   L+     +E +K+      AMKAA+  +  
Sbjct: 65  QALK-RKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMD- 122

Query: 528 MMKTVRIEDIDSMQDEMMDLMDVSNEI 608
                 IE +D +  ++ D  +++ EI
Sbjct: 123 ------IEKVDELMQDIADQQELAQEI 143

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>SNF7_YEAST (P39929) Vacuolar sorting protein SNF7 (DOA4-independent|
           degradation protein 1) (Vacuolar protein
           sorting-associated protein VPS32)
          Length = 240

 Score = 36.6 bits (83), Expect = 0.059
 Identities = 21/84 (25%), Positives = 41/84 (48%)
 Frame = +3

Query: 357 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 536
           K  A   LK++K  E     +     +++Q  F+ E      +TM AM+   K +K +  
Sbjct: 60  KVMAKNALKKKKTIEQLLSKVEGTMESMEQQLFSIESANLNLETMRAMQEGAKAMKTIHS 119

Query: 537 TVRIEDIDSMQDEMMDLMDVSNEI 608
            + I+ +D   DE+ + +++ +EI
Sbjct: 120 GLDIDKVDETMDEIREQVELGDEI 143

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>CHM2A_XENTR (Q6DFS6) Charged multivesicular body protein 2a|
           (Chromatin-modifying protein 2a) (CHMP2a)
          Length = 220

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 29/148 (19%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
 Frame = +3

Query: 174 MKKIFGAKKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEA 353
           M+ +FG +K+  P   ++     + K    +D + +KL+ +  +    IKK       +A
Sbjct: 1   MEFLFGRRKT--PEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDA 58

Query: 354 VKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMM 533
           VK  A  +++ R+  +           N+  V+   + +K       AMK   K +  M 
Sbjct: 59  VKIMAKDLVRTRRYVK----KFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMN 114

Query: 534 KTVRIEDIDSMQ---DEMMDLMDVSNEI 608
           + +++  I  +    ++  ++MD+  E+
Sbjct: 115 RQLKLPQIQKIMMEFEKQSEIMDMKEEM 142

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>CHM2A_CHICK (Q5ZHN1) Charged multivesicular body protein 2a|
           (Chromatin-modifying protein 2a) (CHMP2a)
          Length = 220

 Score = 34.3 bits (77), Expect = 0.29
 Identities = 29/148 (19%), Positives = 63/148 (42%), Gaps = 3/148 (2%)
 Frame = +3

Query: 174 MKKIFGAKKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEA 353
           M  +FG +K+  P   ++     + +    +D + +KL+A+  +    IKK       +A
Sbjct: 1   MDLLFGRRKT--PEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDA 58

Query: 354 VKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMM 533
           VK  A  +++ R+  +           N+  V+   + +K       AMK   K +  M 
Sbjct: 59  VKIMAKDLVRTRRYVK----KFITMRANVQAVSLKIQTLKSNNSMALAMKGVTKAMATMN 114

Query: 534 KTVRIEDIDSMQ---DEMMDLMDVSNEI 608
           + +++  I  +    ++   +MD+  E+
Sbjct: 115 RQLKLPQIQKIMMEFEKQAGIMDMKEEL 142

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>CHM2A_XENLA (Q6IP52) Charged multivesicular body protein 2a|
           (Chromatin-modifying protein 2a) (CHMP2a)
          Length = 220

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 30/149 (20%), Positives = 63/149 (42%), Gaps = 4/149 (2%)
 Frame = +3

Query: 174 MKKIFGAKKSQDPPPSIQDATDRIYKRG-DTVDEKIKKLDAELARYKEQIKKTRPGPAQE 350
           M+ +FG +K+   P  +     R   R    +D + +KL+ +  +    IKK       +
Sbjct: 1   MEFLFGRRKT---PEELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMD 57

Query: 351 AVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGM 530
           AVK  A  +++ R+  +           N+  V+   + +K       AMK   K +  M
Sbjct: 58  AVKIMAKDLVRTRRYVK----KFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATM 113

Query: 531 MKTVRIEDIDSMQ---DEMMDLMDVSNEI 608
            + +++  I  +    ++  ++MD+  E+
Sbjct: 114 NRQLKLPQIQKIMMEFEKQSEIMDMKEEM 142

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>KINH_DROME (P17210) Kinesin heavy chain|
          Length = 975

 Score = 33.1 bits (74), Expect = 0.65
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
 Frame = +3

Query: 237 DRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEG-QRD 413
           +R+Y++ D  DE+I     + ++Y EQ+K        E V  +   I   R+ YE  Q +
Sbjct: 442 ERLYQQLDDKDEEIN----QQSQYAEQLK--------EQVMEQEELIANARREYETLQSE 489

Query: 414 MLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMD 593
           M   Q  N      A E +K+  Q +  + A N + K      + +DID++ +E+     
Sbjct: 490 MARIQQEN----ESAKEEVKEVLQALEEL-AVNYDQKSQEIDNKNKDIDALNEELQQKQS 544

Query: 594 VSN 602
           V N
Sbjct: 545 VFN 547

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>ING5_MOUSE (Q9D8Y8) Inhibitor of growth protein 5|
          Length = 240

 Score = 33.1 bits (74), Expect = 0.65
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = +3

Query: 258 DTVDEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQR 410
           + VD+ I++LDA+LAR++  +K    G   E+  AR+++  + +K     R
Sbjct: 91  EMVDKHIRRLDADLARFEADLKDRMDGSDFESTGARSLKKGRSQKEKRSSR 141

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>YHGE_BACSU (P32399) Hypothetical protein yhgE (ORFB)|
          Length = 775

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
 Frame = +3

Query: 171 AMKKIF-GAKKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQ 347
           A  K++ GAK  QD    + +  D+IY     + +   KL A +  Y +Q  K + G  Q
Sbjct: 429 ATSKLYNGAKTIQDAIDRLTEGADKIYNGSQKLTDGQTKLTAGIGEYNKQFAKAKAGSEQ 488

Query: 348 -----EAVKARAMRILKQRKMYEGQRDMLYNQTYNLD 443
                  V     ++L   K  +     L + + +LD
Sbjct: 489 LVTGSSQVSGGLFKLLDGSKQVQSGSSKLADGSASLD 525

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>KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 757

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 22/50 (44%), Positives = 22/50 (44%)
 Frame = +2

Query: 176 EEDLWGQEEPGPAAVHPGRHRPDIQAGGHGGREDQEAGRGAGALQGADQE 325
           EE L   E P PA    G       AG H G  D EAG G G L GA  E
Sbjct: 196 EEALDSFEAPDPA----GAANAANAAGAHDGGLDDEAGAGGGGLDGAGGE 241

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>DNAK_WOLTR (Q5GSE1) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 635

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 23/106 (21%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
 Frame = +3

Query: 309 KEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASE------GI 470
           +++I+    G   E+   R +R  +++   + +R          D +  ++E      G 
Sbjct: 486 EQKIRIQSSGGLSESEINRMIREAEEKAQEDEKRKKFVEVKNQADSLVHSTEKSLKEYGD 545

Query: 471 KDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMDVSNEI 608
           K + +  +A++ A  ELK   K+  I+D+DS+Q ++ +L  +S ++
Sbjct: 546 KVSPEDKSAIENAVNELKEASKSDNIDDVDSIQQKITNLSQLSMKL 591

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>ZYG12_CAEEL (Q23529) Zygote defective protein 12|
          Length = 774

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 9/134 (6%)
 Frame = +3

Query: 177 KKIFGAKKSQDPPPSIQDATDRIYKR-----GDTVDEKIK----KLDAELARYKEQIKKT 329
           +K+F  K+ ++    I+D  + + K      GD V  KI+    +++A+  R  +   +T
Sbjct: 542 EKLFATKQIEELQQQIEDLQENLLKNQEHASGDVVGLKIQLEKAEVEAQQMREAKMRAET 601

Query: 330 RPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAA 509
                 E +K R   +       +  + ++    YN   V   SE    + Q    MK  
Sbjct: 602 NQAQVDEILKKRTAELEVNATALQKAKAVIDELEYNSRPV---SEDSMTSVQAFKEMKEE 658

Query: 510 NKELKGMMKTVRIE 551
           N++L+  ++ + IE
Sbjct: 659 NEKLRQKVEKLEIE 672

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>OSBP1_RABIT (P16258) Oxysterol-binding protein 1|
          Length = 809

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 182 DLWGQEEPGPAAVHP---GRHRPDIQAGGHGGREDQEAGRGAGALQG 313
           +L G   PGPAA+     G   P +  GG GGR D  AG G+GA  G
Sbjct: 5   ELRGVVGPGPAAIAAPGGGGAGPPVVGGGGGGRGD--AGPGSGAASG 49

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>MYH3_CHICK (P02565) Myosin heavy chain, fast skeletal muscle, embryonic|
          Length = 1940

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
 Frame = +3

Query: 273  KIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVA 452
            K  + + E+A  KE+ +KT+    +E  K+ A    K++++ E    +L  +     QV 
Sbjct: 846  KSAESEKEMANMKEEFEKTK----EELAKSEA----KRKELEEKMVSLLQEKNDLQLQVQ 897

Query: 453  FASEGIKDAQQTMTAMKAANKELKGMMK--TVRIEDIDSMQDEM 578
              ++G+ DA++    +     +L+  +K  T R ED + M  E+
Sbjct: 898  AEADGLADAEERCDQLIKTKIQLEAKIKELTERAEDEEEMNAEL 941

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>GRPE_METTH (O27350) Protein grpE (HSP-70 cofactor)|
          Length = 174

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
 Frame = +3

Query: 195 KKSQDPPPSIQDATDRIYKRGDTVDE---KIKKLDAELARYKEQIKKTRPGPAQEAVK-A 362
           K+ ++    ++D  + I K+ + V E    +++L A+   YK+Q++K       E +K A
Sbjct: 17  KELEELRERLKDLENEIKKKEEEVREYTSHLQRLQADFDNYKKQMEKQE----LEIIKNA 72

Query: 363 RAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKD--AQQTMTAMKAANKELKGMM- 533
               ILK   +YE     + NQ  ++D +       +D   ++ ++ + A  ++    + 
Sbjct: 73  NERLILKLLDVYEDLERAIENQDSSMDGLEVIYRKFRDTLTKEGLSEIPAEGEKFDPFLH 132

Query: 534 KTVRIEDIDSMQD 572
           + V +ED D  +D
Sbjct: 133 EAVMVEDHDGYED 145

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>CUL6_CAEEL (Q21346) Cullin-6|
          Length = 729

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
 Frame = +3

Query: 297 LARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDM--LYNQTYNLDQVAFASEGI 470
           LARY +Q+ K       E    +A+ +LK    Y  ++D+  LY Q +  +++   S   
Sbjct: 382 LARYCDQLLKKNSKVQDETALDKALTVLK----YISEKDVFQLYYQNWFSERIINNSSAS 437

Query: 471 KDAQQTMTAMKAANKELKGMMKTVR-IEDIDSMQDEMMDLMDVSNE 605
            DA++       A + L+     V+ +ED    +D   +  D+  E
Sbjct: 438 DDAEEKFITNLTATEGLEYTRNLVKMVEDAKISKDLTTEFKDIKTE 483

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>RDRP_RCNMV (P22956) Putative RNA-directed RNA polymerase (EC 2.7.7.48)|
           [Contains: 27 kDa protein; 57 kDa protein]
          Length = 767

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
 Frame = +3

Query: 174 MKKIFGAKKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDAE------LARYKEQIKKTRP 335
           M+++     S+ P   ++D  +      +  DE++ K D E       +  ++ IK+ RP
Sbjct: 71  MERVVDDFCSETPESKLEDCLELDTSVNEFFDEEVYKKDEEGVMKLQRSAARKHIKRVRP 130

Query: 336 GPAQEAVKARAMRILKQRKMY 398
           G  Q A+KA   RI  +  ++
Sbjct: 131 GMMQAAIKAVETRIRNRHTIF 151

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>ING5_HUMAN (Q8WYH8) Inhibitor of growth protein 5 (p28ING5)|
          Length = 240

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +3

Query: 258 DTVDEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQR 410
           + VD+ I++LDA+LAR++  +K    G   E+   R ++  + +K   G R
Sbjct: 91  EMVDKHIRRLDADLARFEADLKDKMEGSDFESSGGRGLKKGRGQKEKRGSR 141

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>DNAK_WOLPM (Q73GL7) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 640

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
 Frame = +3

Query: 381 KQRKMYE--GQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIED 554
           K++K  E   Q D L + T    + +    G K + +  +A++ A  ELK + K+  I+D
Sbjct: 522 KRKKFIEVKNQADSLVHST----EKSLTEYGDKVSPEDRSAIENAVNELKEVSKSDNIDD 577

Query: 555 IDSMQDEMMDLMDVSNEI 608
            DS+Q ++ +L  +S ++
Sbjct: 578 ADSIQQKVTNLSQLSMKL 595

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>CCD45_MOUSE (Q8BVV7) Coiled-coil domain-containing protein 45|
          Length = 827

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 28/140 (20%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
 Frame = +3

Query: 192  AKKSQDPPPSIQDATDRIYKRGDTVDEKIKKL---DAELARYKEQIKKTRPGPAQEAVKA 362
            A++       +QD  +   +R D +   +KK    +  L  ++++I++ R    Q  +K 
Sbjct: 602  AQRENRSKKKLQDEIEEALRRHDLLTALVKKEYDHNKRLQDFRDRIQRQRL--TQSKIKE 659

Query: 363  RAMRILKQRKMYEGQRDMLYNQTYNL---DQVAFAS---EGIKDAQQTMTAMKAANKELK 524
                 ++ RK Y+  R  L  +   +   +++ F     EG++  +Q +  ++   KE +
Sbjct: 660  NRHPSVRARKYYDDYRVQLRAKMMKMRTREEMIFKKLFEEGLQIQKQRLRDLRNYAKEKR 719

Query: 525  GMMKTVRIEDIDSMQDEMMD 584
               K     ++DSM++   D
Sbjct: 720  NEEKRQHQNELDSMENHYKD 739

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>SMC4_CAEEL (Q20060) Structural maintenance of chromosome 4 (Protein smc-4)|
          Length = 1549

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 21/101 (20%), Positives = 48/101 (47%)
 Frame = +3

Query: 267  DEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQ 446
            DE++K     + R+++QIKK +                K  +M + Q ++   +T    +
Sbjct: 978  DEEVKSKKETVERFEKQIKKLQ---------------TKGEEMTKKQSELSAAETKLEGE 1022

Query: 447  VAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQ 569
            +   SEGIK+ +++M A +   ++++  +  +++  I   Q
Sbjct: 1023 LKKCSEGIKELKESMLADRLKVEDIEKKLAALKVNRIPRFQ 1063

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>MYO2_SCHPO (Q9USI6) Myosin type-2 heavy chain 1 (Myosin type II heavy chain 1)|
          Length = 1526

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 29/137 (21%), Positives = 62/137 (45%), Gaps = 23/137 (16%)
 Frame = +3

Query: 267  DEKIKKLDAELARYKEQIKKTRPGPAQ---------EAVKARAMRILKQRKMYEGQRDML 419
            D+++KK DAE+   K ++KK +   ++          ++ A    +  +R +   + ++L
Sbjct: 823  DKQLKKRDAEIIELKYELKKQQNSKSEVERDLVETNNSLTAVENLLTTERAIALDKEEIL 882

Query: 420  YNQTYNL----DQVAFASEGIKDAQQTMTAMKAANKELKG--MMKTVRIEDIDSMQDEM- 578
                  L    D  +   +  ++ Q+   ++K  N EL+   + KT ++E + S Q+E+ 
Sbjct: 883  RRTQERLANIEDSFSETKQQNENLQRESASLKQINNELESELLEKTSKVETLLSEQNELK 942

Query: 579  -------MDLMDVSNEI 608
                    DL+D   E+
Sbjct: 943  EKLSLEEKDLLDTKGEL 959

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>YQ56_CAEEL (Q09252) Hypothetical protein C16C10.6|
          Length = 392

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 29/115 (25%), Positives = 43/115 (37%)
 Frame = +3

Query: 249 KRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQ 428
           K GD  D+K   +     + +E++KK R   A+EA                   DM   Q
Sbjct: 131 KEGDEFDDKEVFVTGAYRKQQEEVKKHREQEAEEA----------------AFNDMTSVQ 174

Query: 429 TYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMMDLMD 593
              L ++      + D  +  TA+K   KE K + K    ED D   D   +  D
Sbjct: 175 KQKLWEIGMGRTLLNDLARDPTAIKQRKKEQKNVRKR---EDSDEEIDPKPEKSD 226

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>BHLH3_HUMAN (Q9C0J9) Class B basic helix-loop-helix protein 3 (bHLHB3)|
           (Differentially expressed in chondrocytes protein 2)
           (hDEC2) (Enhancer-of-split and hairy-related protein 1)
           (SHARP-1)
          Length = 482

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +2

Query: 194 QEEPGPAAVHPGRHRPDIQAGGHGGREDQEAGRGAGALQGAD 319
           QE PG  +  P R + D + GG GG     A   A AL G D
Sbjct: 267 QEPPGEDSPAPKRMKLDSRGGGSGGGPGGGAAAAAAALLGPD 308

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>IF5_PHAVU (P48724) Eukaryotic translation initiation factor 5 (eIF-5)|
          Length = 443

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 2/129 (1%)
 Frame = +3

Query: 195 KKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAMR 374
           KK      +++ A     K G+  DE++KK+       K+++KK     A++      + 
Sbjct: 150 KKGSKDKKAMRRAEKERLKEGEAADEELKKV-------KKEVKKKGSSSAKDGTAKSTIS 202

Query: 375 ILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQ--TMTAMKAANKELKGMMKTVRI 548
             K     E +R   + Q    ++     +   D  Q  T T++ A+ + +K  +  V  
Sbjct: 203 KKKGSGSDEDRRSPTHKQIEEKEEAKDEDDDDDDGVQWLTDTSLDASRQRIKEQLSAVTA 262

Query: 549 EDIDSMQDE 575
           + +    DE
Sbjct: 263 DMVMLTTDE 271

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>IF5Y_ARATH (Q9C8F1) Probable eukaryotic translation initiation factor 5-1|
           (eIF-5 1)
          Length = 439

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
 Frame = +3

Query: 195 KKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAMR 374
           KKS     S++ A     + G+  DE+++KL  E A  K   K    G +++ V      
Sbjct: 150 KKSSKDKKSMRRAEKERLREGEAADEEMRKLKKEAASKK---KAATTGTSKDKV------ 200

Query: 375 ILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQ-QTMTAMKAANKELKGMMKTVRIE 551
              ++K +   R +      + +  A + E   D Q QT T+ +AA K +K  +  V  E
Sbjct: 201 --SKKKDHSPPRSL-----SDENDQADSEEDDDDVQWQTDTSREAAEKRMKEQLSAVTAE 253

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>CCD46_MOUSE (Q5PR68) Coiled coil domain containing protein 46|
          Length = 954

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
 Frame = +3

Query: 276  IKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAF 455
            +KKL AE  R K ++KKT     +  ++    R+ +  K Y               ++A 
Sbjct: 769  VKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEY-------------TQKLAK 815

Query: 456  ASEGIKDAQQTMTAMKAANKELKGMMKTVRIED-IDSMQDEMMDLM 590
            +S+ I + Q T++++K  +   + +    R++D I   +DE   L+
Sbjct: 816  SSQIIAELQTTISSLKEESSR-QQLAAERRLQDVIQKFEDEKQQLI 860

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>YCEH_BACSU (O34833) Hypothetical protein yceH|
          Length = 363

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 10/31 (32%), Positives = 24/31 (77%)
 Frame = +3

Query: 237 DRIYKRGDTVDEKIKKLDAELARYKEQIKKT 329
           ++I+K+  T+  +I+K+  E+++YK+++ KT
Sbjct: 118 EKIFKKYQTLGGEIEKIHVEISKYKDEMTKT 148

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>ING3_HUMAN (Q9NXR8) Inhibitor of growth protein 3 (p47ING3 protein)|
          Length = 418

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +3

Query: 192 AKKSQDPPPSIQDATDRIYKRG---DTVDEKIKKLDAELARYKEQIKKTRPGPAQEAVKA 362
           A   +D   +++DA +++       D VD  ++KLD ELA++K +++    G   E ++ 
Sbjct: 63  ASIKKDYYKALEDADEKVQLANQIYDLVDRHLRKLDQELAKFKMELEADNAG-ITEILER 121

Query: 363 RAMRI 377
           R++ +
Sbjct: 122 RSLEL 126

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>41_CANFA (Q6Q7P4) Protein 4.1 (Band 4.1) (P4.1) (4.1R)|
          Length = 810

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 195 KKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGP 341
           KK + PP   +     ++K  D   E+IKK  A ++  K+   ++ P P
Sbjct: 597 KKEEGPPDQAEPEPTEVWKDLDKSQEEIKKHHASISELKKNFMESVPEP 645

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>RAD50_PYRFU (P58301) DNA double-strand break repair rad50 ATPase|
          Length = 882

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 3/144 (2%)
 Frame = +3

Query: 186 FGAKKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDA---ELARYKEQIKKTRPGPAQEAV 356
           FG K  +D    +++  + IYKR  T+    K+L+    E+A+ KE ++ +    A+  V
Sbjct: 585 FGFKSVEDLDSKLREL-EEIYKRYLTLLNSKKELEITQREIAKAKETLEMSFEELAE--V 641

Query: 357 KARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELKGMMK 536
           +A   RI K+    +        Q YN ++     E  ++ ++ +  ++A  KEL+    
Sbjct: 642 EADIERIEKKLSQLK--------QKYNEEEYKKKREEKEELEKELARLEAQKKELEKRRD 693

Query: 537 TVRIEDIDSMQDEMMDLMDVSNEI 608
           T++   ++ ++ E  +   V  EI
Sbjct: 694 TIK-STLEKLKAEKENRERVKKEI 716

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>MYH3_RAT (P12847) Myosin heavy chain, fast skeletal muscle, embryonic|
          Length = 1940

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
 Frame = +3

Query: 273  KIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLD-QV 449
            K  + + E+A  KE+ +KT+     E  K+ A     +RK  E +   L  +  +L  QV
Sbjct: 842  KSAETEKEMATMKEEFQKTK----DELAKSEA-----KRKELEEKLVTLVQEKNDLQLQV 892

Query: 450  AFASEGIKDAQQTMTAMKAANKELKGMMK--TVRIEDIDSMQDEM 578
               SE + DA++    +  A  +L+  +K  T R ED + +  E+
Sbjct: 893  QAESENLLDAEERCDQLIKAKFQLEAKIKEVTERAEDEEEINAEL 937

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>MYH3_HUMAN (P11055) Myosin heavy chain, fast skeletal muscle, embryonic (Muscle|
            embryonic myosin heavy chain) (SMHCE)
          Length = 1940

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
 Frame = +3

Query: 273  KIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLD-QV 449
            K  + + E+A  KE+ +KT+     E  K+ A     +RK  E +   L  +  +L  QV
Sbjct: 842  KSAETEKEMATMKEEFQKTK----DELAKSEA-----KRKELEEKLVTLVQEKNDLQLQV 892

Query: 450  AFASEGIKDAQQTMTAMKAANKELKGMMK--TVRIEDIDSMQDEM 578
               SE + DA++    +  A  +L+  +K  T R ED + +  E+
Sbjct: 893  QAESENLLDAEERCDQLIKAKFQLEAKIKEVTERAEDEEEINAEL 937

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>ING3_MOUSE (Q8VEK6) Inhibitor of growth protein 3 (p47ING3 protein)|
          Length = 421

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +3

Query: 192 AKKSQDPPPSIQDATDRIYKRG---DTVDEKIKKLDAELARYKEQIKKTRPGPAQEAVKA 362
           A   +D   +++DA +++       D VD  ++KLD ELA++K +++    G   E ++ 
Sbjct: 63  ASIKKDYYKALEDADEKVQLANQIYDLVDRHLRKLDQELAKFKMELEADNAG-ITEILER 121

Query: 363 RAMRI 377
           R++ +
Sbjct: 122 RSLEL 126

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>CAPP_PSEPK (Q88MR4) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 875

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 225 QDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEA 353
           QD  D        V E++++L AE A + E+I++TRP P  EA
Sbjct: 160 QDHRDLTPAERQQVRERLRRLIAE-AWHTEEIRRTRPTPVDEA 201

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>NCAP_MACHU (P26578) Nucleocapsid protein (Nucleoprotein)|
          Length = 564

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +3

Query: 219 SIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGP 341
           SIQ  T  I+K GD   +++ +L ++L + K +IK+T  GP
Sbjct: 82  SIQKNT--IFKIGDLGRDELMELASDLEKLKNKIKRTESGP 120

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>YNF0_YEAST (P53952) Hypothetical 31.4 kDa protein in COX5A-ALG11 intergenic|
           region
          Length = 270

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 246 YKRGDTVDEKIKKLDAELARYKE-QIKKTRPGPAQEAVKARAMRILKQR 389
           Y +G  +D        EL + KE +IKK RPG  Q A K  A+   K+R
Sbjct: 178 YCQGRIIDLYKHNARIELEQQKELKIKKRRPGQKQRAAKKLALERTKER 226

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>SYS_LACJO (Q74HZ5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 436

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 441 DQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEMM 581
           DQ+A A    +DA   + AM+   KE+K + K   +ED+   Q+ ++
Sbjct: 57  DQIAQAKRNKEDASDAIKAMREVGKEIKDLDK--EVEDLTQKQNYIL 101

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>UTRO_HUMAN (P46939) Utrophin (Dystrophin-related protein 1) (DRP1) (DRP)|
          Length = 3433

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
 Frame = +3

Query: 324  KTRPGPAQEAVK-ARAMRILKQRKMYEGQRDMLYNQTYNLD-QVAFASEGIKDAQQTMTA 497
            KT   P + A K A+AMR  KQ    + + + L   T N   QV  A E ++D Q  M  
Sbjct: 2645 KTELTPEERAQKIAKAMR--KQSSEVKEKWESLNAVTSNWQKQVDKALEKLRDLQGAMDD 2702

Query: 498  MKAANKELKGMM---KTVRIEDIDSMQDEMMDLMDVSNEI 608
            + A  KE + +    K V    IDS+QD +  +M    EI
Sbjct: 2703 LDADMKEAESVRNGWKPVGDLLIDSLQDHIEKIMAFREEI 2742

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>ESAA_STAAW (Q8NYF5) Protein esaA|
          Length = 1009

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
 Frame = +3

Query: 243 IYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLY 422
           I K+    DE    +D  L  YK Q           A+K    +I +Q  M +  ++  Y
Sbjct: 253 IEKQNSLFDEHNTAMDKMLQDYKSQKDSVELDNYINALKQMDSQIDQQSSMQDTGKEE-Y 311

Query: 423 NQTY--NLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEM---MDL 587
            QT   NLD++    E I+  +   +         KGM++  R +  +S+QDE+    DL
Sbjct: 312 KQTVKENLDKLR---EIIQSQESPFS---------KGMIEDYRKQLTESLQDELANNKDL 359

Query: 588 MDVSNEI 608
            D  N I
Sbjct: 360 QDALNSI 366

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>ESAA_STAAU (P0C049) Protein esaA|
          Length = 1009

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
 Frame = +3

Query: 243 IYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLY 422
           I K+    DE    +D  L  YK Q           A+K    +I +Q  M +  ++  Y
Sbjct: 253 IEKQNSLFDEHNTAMDKMLQDYKSQKDSVELDNYINALKQMDSQIDQQSSMQDTGKEE-Y 311

Query: 423 NQTY--NLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEM---MDL 587
            QT   NLD++    E I+  +   +         KGM++  R +  +S+QDE+    DL
Sbjct: 312 KQTVKENLDKLR---EIIQSQESPFS---------KGMIEDYRKQLTESLQDELANNKDL 359

Query: 588 MDVSNEI 608
            D  N I
Sbjct: 360 QDALNSI 366

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>ESAA_STAAS (Q6GCI9) Protein esaA|
          Length = 1009

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
 Frame = +3

Query: 243 IYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLY 422
           I K+    DE    +D  L  YK Q           A+K    +I +Q  M +  ++  Y
Sbjct: 253 IEKQNSLFDEHNTAMDKMLQDYKSQKDSVELDNYINALKQMDSQIDQQSSMQDTGKEE-Y 311

Query: 423 NQTY--NLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEM---MDL 587
            QT   NLD++    E I+  +   +         KGM++  R +  +S+QDE+    DL
Sbjct: 312 KQTVKENLDKLR---EIIQSQESPFS---------KGMIEDYRKQLTESLQDELANNKDL 359

Query: 588 MDVSNEI 608
            D  N I
Sbjct: 360 QDALNSI 366

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>ESAA_STAAR (Q6GK28) Protein esaA|
          Length = 1009

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
 Frame = +3

Query: 243 IYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLY 422
           I K+    DE    +D  L  YK Q           A+K    +I +Q  M +  ++  Y
Sbjct: 253 IEKQNSLFDEHNTAMDKMLQDYKSQKDSVELDNYINALKQMDSQIDQQSSMQDTGKEE-Y 311

Query: 423 NQTY--NLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEM---MDL 587
            QT   NLD++    E I+  +   +         KGM++  R +  +S+QDE+    DL
Sbjct: 312 KQTVKENLDKLR---EIIQSQESPFS---------KGMIEDYRKQLTESLQDELANNKDL 359

Query: 588 MDVSNEI 608
            D  N I
Sbjct: 360 QDALNSI 366

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>ESAA_STAAN (Q7A7S3) Protein esaA|
          Length = 1009

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
 Frame = +3

Query: 243 IYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLY 422
           I K+    DE    +D  L  YK Q           A+K    +I +Q  M +  ++  Y
Sbjct: 253 IEKQNSLFDEHNTAMDKMLQDYKSQKDSVELDNYINALKQMDSQIDQQSSMQDTGKEE-Y 311

Query: 423 NQTY--NLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEM---MDL 587
            QT   NLD++    E I+  +   +         KGM++  R +  +S+QDE+    DL
Sbjct: 312 KQTVKENLDKLR---EIIQSQESPFS---------KGMIEDYRKQLTESLQDELANNKDL 359

Query: 588 MDVSNEI 608
            D  N I
Sbjct: 360 QDALNSI 366

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>ESAA_STAAM (Q99WU3) Protein esaA|
          Length = 1009

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
 Frame = +3

Query: 243 IYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLY 422
           I K+    DE    +D  L  YK Q           A+K    +I +Q  M +  ++  Y
Sbjct: 253 IEKQNSLFDEHNTAMDKMLQDYKSQKDSVELDNYINALKQMDSQIDQQSSMQDTGKEE-Y 311

Query: 423 NQTY--NLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEM---MDL 587
            QT   NLD++    E I+  +   +         KGM++  R +  +S+QDE+    DL
Sbjct: 312 KQTVKENLDKLR---EIIQSQESPFS---------KGMIEDYRKQLTESLQDELANNKDL 359

Query: 588 MDVSNEI 608
            D  N I
Sbjct: 360 QDALNSI 366

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>ESAA_STAAC (Q5HJ90) Protein esaA|
          Length = 1009

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
 Frame = +3

Query: 243 IYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLY 422
           I K+    DE    +D  L  YK Q           A+K    +I +Q  M +  ++  Y
Sbjct: 253 IEKQNSLFDEHNTAMDKMLQDYKSQKDSVELDNYINALKQMDSQIDQQSSMQDTGKEE-Y 311

Query: 423 NQTY--NLDQVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEM---MDL 587
            QT   NLD++    E I+  +   +         KGM++  R +  +S+QDE+    DL
Sbjct: 312 KQTVKENLDKLR---EIIQSQESPFS---------KGMIEDYRKQLTESLQDELANNKDL 359

Query: 588 MDVSNEI 608
            D  N I
Sbjct: 360 QDALNSI 366

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>KGUA_MYCPU (Q98PN5) Guanylate kinase (EC 2.7.4.8) (GMP kinase)|
          Length = 196

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 213 PPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIK 323
           PPS ++  +RI KRG    EKI      +A+ KE++K
Sbjct: 132 PPSFEELENRIIKRGTDTKEKIA---IRMAKAKEELK 165

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>SYT_LEIXX (Q6AFC3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 695

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 23/75 (30%), Positives = 36/75 (48%)
 Frame = +3

Query: 333 PGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAAN 512
           P P Q  ++ARA R  +    +  + D+L      +DQVA   E   D  +++ AM+  N
Sbjct: 5   PSPPQAGLRARAARAFRLELTHPFRHDLL-----GVDQVADGFEFFTD--RSVVAMR-VN 56

Query: 513 KELKGMMKTVRIEDI 557
            ELK +   V   D+
Sbjct: 57  GELKDLATIVTTTDV 71

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>OCLN_PONPY (Q5RFS5) Occludin|
          Length = 522

 Score = 24.6 bits (52), Expect(2) = 9.0
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 15/50 (30%)
 Frame = +3

Query: 213 PPSIQDATDRIYKRG---------------DTVDEKIKKLDAELARYKEQ 317
           PP   D   ++YKR                D +++++ +LD EL  Y+E+
Sbjct: 421 PPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYREE 470



 Score = 23.1 bits (48), Expect(2) = 9.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 25  LPISSPILQQIRPRKQSSLDYHQPRER 105
           LP++SP+    +PR  SS ++  P +R
Sbjct: 354 LPLTSPVDDFRQPRYSSSGNFETPSKR 380

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>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel|
           [Contains: Glutamic acid-rich protein (GARP);
           Cyclic-nucleotide-gated cation channel 4 (CNG channel 4)
           (CNG-4) (Cyclic nucleotide-gated cation channel
           modulatory subunit)]
          Length = 1394

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +2

Query: 194 QEEPGPAAVHPGRHRPDIQAGG----HGGREDQEAGRGAGALQGADQED 328
           +EE G      GR + + +  G     GG +++E GRG   ++G ++E+
Sbjct: 410 EEEGGEKEDEEGREKEEEEGRGKEEEEGGEKEEEEGRGKEEVEGREEEE 458

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>ARI3A_HUMAN (Q99856) AT-rich interactive domain-containing protein 3A (ARID|
           domain-containing protein 3A) (B-cell regulator of IgH
           transcription) (Bright) (E2F-binding protein 1)
          Length = 593

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = +2

Query: 185 LWGQEEPGPAAVHPG---RHRPDIQAGGHG 265
           L GQE PGP   HPG      P +Q   HG
Sbjct: 192 LGGQERPGPGPAHPGGAAHVAPQLQPPDHG 221

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>SPAA_STRDO (P21979) Cell surface antigen I/II precursor|
          Length = 1528

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 20/111 (18%), Positives = 49/111 (44%)
 Frame = +3

Query: 192 AKKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAM 371
           +K++ D   + +D    +       D   +++ A+ A+Y++ +   +    +  ++ R  
Sbjct: 154 SKQAADIQKATEDYKASVAANQAETDRINQEIAAKKAQYEQDLAANKAEVERSLMRMRKP 213

Query: 372 RILKQRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKELK 524
           R + + K+ + Q+D+   Q  N D  A  +   +   +    ++AAN   K
Sbjct: 214 RPIYEAKLAQNQKDLAAIQQANSDSQAAYAAAKEAYDKEWARVQAANAAAK 264

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>MYSS_CHICK (P13538) Myosin heavy chain, skeletal muscle, adult|
          Length = 1938

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
 Frame = +3

Query: 273  KIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKM---YEGQRDMLYNQTYNLD 443
            K  + + E+A  KE+ +KT+    +E  K+ A R   + KM    + + D+        D
Sbjct: 843  KSAESEKEMANMKEEFEKTK----EELAKSEAKRKELEEKMVVLLQEKNDLQLQVQAEAD 898

Query: 444  QVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEM 578
             +A A E      +T   ++A  KE+     T R ED + +  E+
Sbjct: 899  SLADAEERCDQLIKTKIQLEAKIKEV-----TERAEDEEEINAEL 938

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>MYH6_MOUSE (Q02566) Myosin heavy chain, cardiac muscle alpha isoform|
            (MyHC-alpha)
          Length = 1938

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 32/147 (21%), Positives = 67/147 (45%), Gaps = 9/147 (6%)
 Frame = +3

Query: 195  KKSQDPPPSIQDATDRIYKRGDTVDEKIKKLDAELARYKEQIKKTRPGPAQ-EAVKARAM 371
            KK +     +Q   +   +     +EK KK   + A   E++KK +   A  E +K    
Sbjct: 1730 KKMESDLTQLQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNME 1789

Query: 372  RILK--QRKMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMTAMKAANKE-LKGMMKTV 542
            + +K  Q ++ E ++  L      L ++      +++ +  + A +  N E +KGM K+ 
Sbjct: 1790 QTIKDLQHRLDEAEQIALKGGKKQLQKL---EARVRELENELEAEQKRNAESVKGMRKSE 1846

Query: 543  -RIEDIDSMQDE----MMDLMDVSNEI 608
             RI+++    +E    +M L D+ +++
Sbjct: 1847 RRIKELTYQTEEDKKNLMRLQDLVDKL 1873

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>MYH4_RABIT (Q28641) Myosin-4 (Myosin heavy chain, skeletal muscle, juvenile)|
          Length = 1938

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 24/102 (23%), Positives = 45/102 (44%)
 Frame = +3

Query: 273  KIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVA 452
            K  + + E+A  KE+ +KT+   A+   K + +   K   + + + D+        D +A
Sbjct: 844  KSAETEKEMANMKEEFEKTKESLAKAEAKEKELE-EKMVALMQEKNDLQLQVQAEADSLA 902

Query: 453  FASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEM 578
             A E      +T   ++A  KE+     T R ED + +  E+
Sbjct: 903  DAEERCDQLIKTKIQLEAKIKEV-----TERAEDEEEINAEL 939

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>TIG_STRMU (Q8CWZ6) Trigger factor (TF)|
          Length = 427

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 13/56 (23%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = +3

Query: 264 VDEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRI-LKQRKMYEGQRDMLYNQ 428
           +DE+++ LD   A+Y+++++ T+     +AV+A A+ + +   ++ E   +M++++
Sbjct: 258 IDEEVETLDELKAKYRKELEATKETAYNDAVEAAAIDLAVANAEIVELPEEMIHDE 313

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>SYE_PROMM (Q7TUT7) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 476

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
 Frame = +3

Query: 285 LDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFASE 464
           L   L   K+ + + RP   +  ++A  +  L      +G +  L N    LD+ ++   
Sbjct: 360 LGPSLTLLKDGVDQARPFFEEPTLQADGLEQLA----VDGAKAGLSNLLDQLDRTSWDGF 415

Query: 465 GIKDAQQTMT-AMKAANKELKGMMKTVRIEDIDSMQ 569
            +K AQQ +T A +AAN +   +MK++R   +  +Q
Sbjct: 416 DVKQAQQLLTNAAQAANVKKGVIMKSLRAALLGRLQ 451

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>RT28_YEAST (P21771) 40S ribosomal protein S28, mitochondrial precursor|
          Length = 286

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 25/98 (25%), Positives = 44/98 (44%)
 Frame = +3

Query: 279 KKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKMYEGQRDMLYNQTYNLDQVAFA 458
           +K +A+ A  K    K  P      V  RA      R M E +  ++ ++ YN+++V   
Sbjct: 48  QKNEAKQATLKASTDKVDP------VLGRADTPFITRIMAELKEPLVLSKGYNIEEVDKF 101

Query: 459 SEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQD 572
              I+ A++    +   N E+ G      IEDI+ ++D
Sbjct: 102 LAAIESAKRERAELSGLNTEVVG------IEDIEKLED 133

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>MYH1_HUMAN (P12882) Myosin-1 (Myosin heavy chain, skeletal muscle, adult 1)|
            (Myosin heavy chain IIx/d) (MyHC-IIx/d)
          Length = 1939

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
 Frame = +3

Query: 273  KIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRILKQRKM---YEGQRDMLYNQTYNLD 443
            K  + + E+A  KE+ +KT+    +E  K  A R   + KM    + + D+        D
Sbjct: 845  KSAETEKEMANMKEEFEKTK----EELAKTEAKRKELEEKMVTLMQEKNDLQLQVQAEAD 900

Query: 444  QVAFASEGIKDAQQTMTAMKAANKELKGMMKTVRIEDIDSMQDEM 578
             +A A E      +T   ++A  KE+     T R ED + +  E+
Sbjct: 901  SLADAEERCDQLIKTKIQLEAKIKEV-----TERAEDEEEINAEL 940

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>BRU1_ARATH (Q6Q4D0) Protein BRUSHY 1 (Protein TONSOKU) (Protein MGOUN 3)|
          Length = 1311

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -1

Query: 590 HKIHHLVLHAIYIFNPDSLHHPFQLFIGSLHCSHSLLSIFNSLRRKSNLVKII 432
           HKI+H+   A    N   LH+  Q +I +L C     S+  S++ +S LV+ I
Sbjct: 238 HKINHVQGEAKGYINLAELHNKTQKYIDALLCYGKASSLAKSMQDESALVEQI 290


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,238,934
Number of Sequences: 219361
Number of extensions: 1197135
Number of successful extensions: 5366
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 4927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5353
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result