ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd18m07 |
|---|---|
| Clone Library Name | barley_pub |
>R126B_XENLA (Q6IRP0) RING finger protein 126-B| Length = 312 Score = 38.9 bits (89), Expect = 0.008 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +2 Query: 230 YWCFQCRQRVRPRGREMECPYCDSGFVAEMDD 325 Y+C C + PR E CP CDSGF+ E+ + Sbjct: 11 YFCHSCTAEITPRLPEYTCPRCDSGFIEELPE 42
>R126A_XENLA (Q7T0Q3) RING finger protein 126-A| Length = 312 Score = 38.9 bits (89), Expect = 0.008 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +2 Query: 230 YWCFQCRQRVRPRGREMECPYCDSGFVAEMDD 325 Y+C C + PR E CP CDSGF+ E+ + Sbjct: 11 YFCHSCTAEITPRLPEYTCPRCDSGFIEELPE 42
>RN126_XENTR (Q6DIP3) RING finger protein 126| Length = 311 Score = 38.1 bits (87), Expect = 0.014 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +2 Query: 230 YWCFQCRQRVRPRGREMECPYCDSGFVAEMDD 325 Y+C C + PR E CP CDSGF+ E+ + Sbjct: 11 YFCHSCTAEIIPRLPEYTCPRCDSGFIEELPE 42
>ZN364_MOUSE (Q9D0C1) Zinc finger protein 364 (Rabring 7)| Length = 305 Score = 37.0 bits (84), Expect = 0.030 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 230 YWCFQCRQRVRPRGREMECPYCDSGFVAEMDD 325 ++C C+ V P+ E CP CDSGF+ E+ D Sbjct: 20 FFCHFCKGEVNPKLPEYICPRCDSGFIEEVTD 51
>ZN364_HUMAN (Q9Y4L5) Zinc finger protein 364 (Rabring 7) (RING finger protein| 115) Length = 304 Score = 35.0 bits (79), Expect = 0.11 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +2 Query: 230 YWCFQCRQRVRPRGREMECPYCDSGFVAEMDD 325 ++C C+ V P+ E CP C+SGF+ E+ D Sbjct: 20 FFCHFCKGEVSPKLPEYICPRCESGFIEEVTD 51
>RN126_HUMAN (Q9BV68) RING finger protein 126| Length = 326 Score = 33.1 bits (74), Expect = 0.44 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +2 Query: 230 YWCFQCRQRVRPRGREMECPYCDSGFVAEMDD 325 Y+C C + PR + CP C+SGF+ E+ + Sbjct: 11 YFCHCCSVEIVPRLPDYICPRCESGFIEELPE 42
>RN126_MOUSE (Q91YL2) RING finger protein 126| Length = 313 Score = 33.1 bits (74), Expect = 0.44 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +2 Query: 230 YWCFQCRQRVRPRGREMECPYCDSGFVAEMDD 325 Y+C C + PR + CP C+SGF+ E+ + Sbjct: 11 YFCHCCSVEIVPRLPDYICPRCESGFIEELPE 42
>DMSA_ECOLI (P18775) Anaerobic dimethyl sulfoxide reductase chain A precursor| (EC 1.8.99.-) (DMSO reductase) Length = 814 Score = 31.6 bits (70), Expect = 1.3 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = +2 Query: 176 LVYL*GNTPEE--MSGGRQTYWCFQCRQRVRPRGREMECPYCDSG 304 LV L GN P E MSGG TY+ Q RQ+ R ++ Y D+G Sbjct: 234 LVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTG 278
>YS96_CAEEL (Q09965) Putative G-protein coupled receptor B0244.6| Length = 982 Score = 30.8 bits (68), Expect = 2.2 Identities = 12/44 (27%), Positives = 27/44 (61%) Frame = +3 Query: 171 SFWFICEAIHLKKCQEVGRHIGASSVDSGLGRVAGRWSVLTVIL 302 SF FIC + H++K +++G + + ++ GR+ W++ +I+ Sbjct: 828 SFVFICLSFHIRKAKKLGSYTSSQTLHHARGRLG--WTLTAIIV 869
>PER_DROSE (Q03354) Period circadian protein (Fragments)| Length = 661 Score = 29.6 bits (65), Expect = 4.8 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +3 Query: 39 RPTLAATGCVQGTRPSSLQSKRRGRGDSSPEASIRCPQERRGSAS 173 +P + TGCV+ LQ ++ G S P+A+ + QE S S Sbjct: 92 KPRPSGTGCVEQQICRELQDQQHGEDHSEPQAAEQLQQEEDQSGS 136
>ESR1_SALSA (P50242) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| (Fragment) Length = 535 Score = 29.6 bits (65), Expect = 4.8 Identities = 20/55 (36%), Positives = 26/55 (47%) Frame = +3 Query: 105 RGRGDSSPEASIRCPQERRGSASFWFICEAIHLKKCQEVGRHIGASSVDSGLGRV 269 +G D A+ +C +R S C+A L+KC EVG G D G GRV Sbjct: 134 QGHNDYMCPATNQCTMDRNRRKS----CQACRLRKCYEVGMVKGGLRKDRG-GRV 183
>LEP_MYCTU (Q10789) Probable signal peptidase I (EC 3.4.21.89) (SPase I)| (Leader peptidase I) Length = 294 Score = 29.6 bits (65), Expect = 4.8 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Frame = -1 Query: 205 FRCIASQINQKEADPLRSW--GQRMEASGDESPRPLLLLCKEEGRVP*TQPVAARVGREI 32 + C+ S+ P R W G S D S LLC ++ +P T PVA +G+ Sbjct: 216 YPCLGSEFGPVTVPPGRVWVMGDNRTHSAD-SRAHCPLLCTDDP-LPGTVPVANVIGKAR 273 Query: 31 PQVWPP 14 VWPP Sbjct: 274 LIVWPP 279
>ESR1_ONCMY (P16058) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 622 Score = 29.6 bits (65), Expect = 4.8 Identities = 20/55 (36%), Positives = 26/55 (47%) Frame = +3 Query: 105 RGRGDSSPEASIRCPQERRGSASFWFICEAIHLKKCQEVGRHIGASSVDSGLGRV 269 +G D A+ +C +R S C+A L+KC EVG G D G GRV Sbjct: 222 QGHNDYMCPATNQCTMDRNRRKS----CQACRLRKCYEVGMVKGGLRKDRG-GRV 271
>TIG2_MOUSE (Q9DD06) Retinoic acid receptor responder protein 2 precursor| Length = 162 Score = 29.3 bits (64), Expect = 6.3 Identities = 13/45 (28%), Positives = 20/45 (44%) Frame = -1 Query: 388 KPWVTMEITVRPNKLAHESIDIIHFSHKSRITVRTLHLPATRPNP 254 K W E T++PN + + I K +I R +H P + P Sbjct: 82 KDWKKPECTIKPNGRRRKCLACIKMDPKGKILGRIVHCPILKQGP 126
>PI51A_MOUSE (P70182) Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type I alpha) (PtdIns(4)P-5-kinase alpha) (PIP5KIalpha) (Phosphatidylinositol-4-phosphate 5-kinase type I beta) (PI4P5KIb Length = 546 Score = 29.3 bits (64), Expect = 6.3 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 19/70 (27%) Frame = -3 Query: 401 PP*SQTLGHDGNHCTSQQIGS*EHRHH-------------------PFQPQIQNHSKDTP 279 P S+ G GN CTSQ + S EHR P P ++ S+ +P Sbjct: 452 PSFSRRSGPSGNSCTSQLMASGEHRAQVTTKAEVEPDVHLGRPDVLPQTPPLEEISEGSP 511 Query: 278 SPGHAA*PAV 249 PG + P V Sbjct: 512 VPGPSFSPVV 521
>ELO2_YEAST (P25358) Elongation of fatty acids protein 2 (GNS1 protein)| (v-SNARE bypass mutant gene 2 protein) Length = 347 Score = 29.3 bits (64), Expect = 6.3 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = -3 Query: 254 AVYTGSTNMSAYLLTFLQVYCLTNKPKGSGSPPFLGAANGGLRRRV 117 A + G +S+YL+ F+ Y K KG+ + + A+GG+ +V Sbjct: 276 ATFAGCAIISSYLVLFISFYINVYKRKGTKTSRVVKRAHGGVAAKV 321
>Y17K_TYDVA (P31618) Hypothetical 16.7 kDa protein| Length = 146 Score = 29.3 bits (64), Expect = 6.3 Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 9/96 (9%) Frame = +2 Query: 131 GLHSLPPRTEGIRFLLVYL*G-----NTPEEMSGGRQTYWCFQCRQRVRPRGREMECPYC 295 G H PR G R +Y+ G T S GR YW G Y Sbjct: 5 GRHIQEPRRAGTRIPSLYICGPSRTGKTTWARSLGRHNYW----------NGTIDFTVYD 54 Query: 296 DSGFVAEMDDVD----ALMSQFVGTYSDFHRDPRFG 391 D +DD+ L Q +G SDF +P++G Sbjct: 55 DHATYNVIDDIPFKFVPLWKQLIGCQSDFTVNPKYG 90
>SC6A7_HUMAN (Q99884) Sodium-dependent proline transporter (Solute carrier| family 6 member 7) Length = 636 Score = 28.9 bits (63), Expect = 8.2 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 10/61 (16%) Frame = -1 Query: 178 QKEADPLRSWGQRMEAS----------GDESPRPLLLLCKEEGRVP*TQPVAARVGREIP 29 Q+ + P WG +E + G +SP+PL++ ++ G + + A V REI Sbjct: 570 QQASRPAMDWGPSLEENRTGMYVATLAGSQSPKPLMVHMRKYGGITSFENTAIEVDREIA 629 Query: 28 Q 26 + Sbjct: 630 E 630
>SC6A7_MOUSE (Q6PGE7) Sodium-dependent proline transporter (Solute carrier| family 6 member 7) Length = 637 Score = 28.9 bits (63), Expect = 8.2 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 10/61 (16%) Frame = -1 Query: 178 QKEADPLRSWGQRMEAS----------GDESPRPLLLLCKEEGRVP*TQPVAARVGREIP 29 Q+ + P WG +E + G +SP+PL++ ++ G + + A V REI Sbjct: 570 QQASRPAMDWGPSLEENRTGMYVATLAGSQSPKPLMVHMRKYGGITSFENTAIEVDREIA 629 Query: 28 Q 26 + Sbjct: 630 E 630
>NHR55_CAEEL (O16962) Nuclear hormone receptor family member nhr-55| Length = 424 Score = 28.9 bits (63), Expect = 8.2 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 177 WFICEAIHLKKCQEVGRHI 233 WF C+ LKKCQ+VG I Sbjct: 77 WFNCKPCRLKKCQDVGMTI 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,257,934 Number of Sequences: 219361 Number of extensions: 2078363 Number of successful extensions: 6244 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5940 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6239 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
