ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd18m04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473241.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 204 bits (103), Expect = 2e-49 Identities = 198/229 (86%), Gaps = 3/229 (1%) Strand = Plus / Minus Query: 2 gcactcgtgcgggccgagggagttgaaagggtggtcggggctggcc---gccgggtgctc 58 ||||||||| |||||||||||||||||||||||||||| | ||| || |||||||| Sbjct: 363 gcactcgtgggggccgagggagttgaaagggtggtcggcggcggcgtcggcggggtgctc 304 Query: 59 tctccggtggaccgtggagtagagaagcgccttcatccacgtcgtgccggacttgggcat 118 |||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||| Sbjct: 303 cctccggtgcaccgtggcgtagaggagcgccttgatccacgtcgtgccggacttgggcaa 244 Query: 119 cgtggcgacgacgatgtccgaggggcgcgcggcgaagcgcgcgtcggcgaccatggcgcc 178 |||||||||| |||||| ||||||||||||||||| ||||||||||||||||| || || Sbjct: 243 ggtggcgacgatgatgtcggaggggcgcgcggcgaaccgcgcgtcggcgaccatcgcacc 184 Query: 179 gaccagcggaggcagggtgctgtaccagccgttctcgtggcggtagagc 227 ||||| || ||| | ||||||||||| || ||||||||||||||| Sbjct: 183 gaccataggcatgaggctactgtaccagcctttgtcgtggcggtagagc 135 Score = 44.1 bits (22), Expect = 0.52 Identities = 55/66 (83%) Strand = Plus / Minus Query: 252 gagcacggccaggaggacgccagttcggtgaactgccggtagagctcttcgttggtttcg 311 |||| ||||||||||||| || |||||||||||| |||||| || |||| |||||| Sbjct: 113 gagctcggccaggaggacaccgagtcggtgaactgcttgtagagttcctcgtcagtttcg 54 Query: 312 gcgtcg 317 |||||| Sbjct: 53 gcgtcg 48
>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence Length = 141545 Score = 204 bits (103), Expect = 2e-49 Identities = 198/229 (86%), Gaps = 3/229 (1%) Strand = Plus / Minus Query: 2 gcactcgtgcgggccgagggagttgaaagggtggtcggggctggcc---gccgggtgctc 58 ||||||||| |||||||||||||||||||||||||||| | ||| || |||||||| Sbjct: 70830 gcactcgtgggggccgagggagttgaaagggtggtcggcggcggcgtcggcggggtgctc 70771 Query: 59 tctccggtggaccgtggagtagagaagcgccttcatccacgtcgtgccggacttgggcat 118 |||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||| Sbjct: 70770 cctccggtgcaccgtggcgtagaggagcgccttgatccacgtcgtgccggacttgggcaa 70711 Query: 119 cgtggcgacgacgatgtccgaggggcgcgcggcgaagcgcgcgtcggcgaccatggcgcc 178 |||||||||| |||||| ||||||||||||||||| ||||||||||||||||| || || Sbjct: 70710 ggtggcgacgatgatgtcggaggggcgcgcggcgaaccgcgcgtcggcgaccatcgcacc 70651 Query: 179 gaccagcggaggcagggtgctgtaccagccgttctcgtggcggtagagc 227 ||||| || ||| | ||||||||||| || ||||||||||||||| Sbjct: 70650 gaccataggcatgaggctactgtaccagcctttgtcgtggcggtagagc 70602 Score = 44.1 bits (22), Expect = 0.52 Identities = 55/66 (83%) Strand = Plus / Minus Query: 252 gagcacggccaggaggacgccagttcggtgaactgccggtagagctcttcgttggtttcg 311 |||| ||||||||||||| || |||||||||||| |||||| || |||| |||||| Sbjct: 70580 gagctcggccaggaggacaccgagtcggtgaactgcttgtagagttcctcgtcagtttcg 70521 Query: 312 gcgtcg 317 |||||| Sbjct: 70520 gcgtcg 70515
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 204 bits (103), Expect = 2e-49 Identities = 198/229 (86%), Gaps = 3/229 (1%) Strand = Plus / Minus Query: 2 gcactcgtgcgggccgagggagttgaaagggtggtcggggctggcc---gccgggtgctc 58 ||||||||| |||||||||||||||||||||||||||| | ||| || |||||||| Sbjct: 26294253 gcactcgtgggggccgagggagttgaaagggtggtcggcggcggcgtcggcggggtgctc 26294194 Query: 59 tctccggtggaccgtggagtagagaagcgccttcatccacgtcgtgccggacttgggcat 118 |||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||| Sbjct: 26294193 cctccggtgcaccgtggcgtagaggagcgccttgatccacgtcgtgccggacttgggcaa 26294134 Query: 119 cgtggcgacgacgatgtccgaggggcgcgcggcgaagcgcgcgtcggcgaccatggcgcc 178 |||||||||| |||||| ||||||||||||||||| ||||||||||||||||| || || Sbjct: 26294133 ggtggcgacgatgatgtcggaggggcgcgcggcgaaccgcgcgtcggcgaccatcgcacc 26294074 Query: 179 gaccagcggaggcagggtgctgtaccagccgttctcgtggcggtagagc 227 ||||| || ||| | ||||||||||| || ||||||||||||||| Sbjct: 26294073 gaccataggcatgaggctactgtaccagcctttgtcgtggcggtagagc 26294025 Score = 44.1 bits (22), Expect = 0.52 Identities = 55/66 (83%) Strand = Plus / Minus Query: 252 gagcacggccaggaggacgccagttcggtgaactgccggtagagctcttcgttggtttcg 311 |||| ||||||||||||| || |||||||||||| |||||| || |||| |||||| Sbjct: 26294003 gagctcggccaggaggacaccgagtcggtgaactgcttgtagagttcctcgtcagtttcg 26293944 Query: 312 gcgtcg 317 |||||| Sbjct: 26293943 gcgtcg 26293938 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 gcggcgaagcgcgcgtcggcgacc 170 ||||||||||| |||||||||||| Sbjct: 22969831 gcggcgaagcgggcgtcggcgacc 22969808
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 172 bits (87), Expect = 8e-40 Identities = 151/170 (88%), Gaps = 3/170 (1%) Strand = Plus / Plus Query: 6 tcgtgcgggccgagggagttgaaagggtggtcggggctggc--cgccggg-tgctctctc 62 ||||| ||||||||||||||||| ||||||||| | ||| || |||| ||||||||| Sbjct: 24909261 tcgtgggggccgagggagttgaaggggtggtcgccggcggcgtcggcgggatgctctctc 24909320 Query: 63 cggtggaccgtggagtagagaagcgccttcatccacgtcgtgccggacttgggcatcgtg 122 ||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||| ||| Sbjct: 24909321 cggtgcaccgtggcgtagagcagcgccttgatccacgtcgtgccggacttgggcagggtg 24909380 Query: 123 gcgacgacgatgtccgaggggcgcgcggcgaagcgcgcgtcggcgaccat 172 | ||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 24909381 gggacgacgatgtccgaggggcgcgcggcgaagagctcgtcggcgaccat 24909430 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 151 cgaagcgcgcgtcggcgaccatggcgc 177 ||||||||| ||||||||||||||||| Sbjct: 3570771 cgaagcgcgggtcggcgaccatggcgc 3570745 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 150 gcgaagcgcgcgtcggcgaccatggcgc 177 ||||||| || ||||||||||||||||| Sbjct: 3582217 gcgaagcacgggtcggcgaccatggcgc 3582244
>dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0530H05 Length = 145952 Score = 172 bits (87), Expect = 8e-40 Identities = 151/170 (88%), Gaps = 3/170 (1%) Strand = Plus / Plus Query: 6 tcgtgcgggccgagggagttgaaagggtggtcggggctggc--cgccggg-tgctctctc 62 ||||| ||||||||||||||||| ||||||||| | ||| || |||| ||||||||| Sbjct: 3816 tcgtgggggccgagggagttgaaggggtggtcgccggcggcgtcggcgggatgctctctc 3875 Query: 63 cggtggaccgtggagtagagaagcgccttcatccacgtcgtgccggacttgggcatcgtg 122 ||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||| ||| Sbjct: 3876 cggtgcaccgtggcgtagagcagcgccttgatccacgtcgtgccggacttgggcagggtg 3935 Query: 123 gcgacgacgatgtccgaggggcgcgcggcgaagcgcgcgtcggcgaccat 172 | ||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 3936 gggacgacgatgtccgaggggcgcgcggcgaagagctcgtcggcgaccat 3985
>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0072A21 Length = 158287 Score = 172 bits (87), Expect = 8e-40 Identities = 151/170 (88%), Gaps = 3/170 (1%) Strand = Plus / Plus Query: 6 tcgtgcgggccgagggagttgaaagggtggtcggggctggc--cgccggg-tgctctctc 62 ||||| ||||||||||||||||| ||||||||| | ||| || |||| ||||||||| Sbjct: 120344 tcgtgggggccgagggagttgaaggggtggtcgccggcggcgtcggcgggatgctctctc 120403 Query: 63 cggtggaccgtggagtagagaagcgccttcatccacgtcgtgccggacttgggcatcgtg 122 ||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||| ||| Sbjct: 120404 cggtgcaccgtggcgtagagcagcgccttgatccacgtcgtgccggacttgggcagggtg 120463 Query: 123 gcgacgacgatgtccgaggggcgcgcggcgaagcgcgcgtcggcgaccat 172 | ||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 120464 gggacgacgatgtccgaggggcgcgcggcgaagagctcgtcggcgaccat 120513
>dbj|AK109408.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D04, full insert sequence Length = 1274 Score = 172 bits (87), Expect = 8e-40 Identities = 151/170 (88%), Gaps = 3/170 (1%) Strand = Plus / Minus Query: 6 tcgtgcgggccgagggagttgaaagggtggtcggggctggc--cgccggg-tgctctctc 62 ||||| ||||||||||||||||| ||||||||| | ||| || |||| ||||||||| Sbjct: 421 tcgtgggggccgagggagttgaaggggtggtcgccggcggcgtcggcgggatgctctctc 362 Query: 63 cggtggaccgtggagtagagaagcgccttcatccacgtcgtgccggacttgggcatcgtg 122 ||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||| ||| Sbjct: 361 cggtgcaccgtggcgtagagcagcgccttgatccacgtcgtgccggacttgggcagggtg 302 Query: 123 gcgacgacgatgtccgaggggcgcgcggcgaagcgcgcgtcggcgaccat 172 | ||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 301 gggacgacgatgtccgaggggcgcgcggcgaagagctcgtcggcgaccat 252
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 84 agcgccttcatccacgtcgtgccggacttgggcatcgtggcga 126 |||||||| | |||||||| ||||||||||||||| ||||||| Sbjct: 27987039 agcgccttgagccacgtcgagccggacttgggcatggtggcga 27987081
>dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_A08 Length = 119304 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 84 agcgccttcatccacgtcgtgccggacttgggcatcgtggcga 126 |||||||| | |||||||| ||||||||||||||| ||||||| Sbjct: 30701 agcgccttgagccacgtcgagccggacttgggcatggtggcga 30743
>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_G04 Length = 124666 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 84 agcgccttcatccacgtcgtgccggacttgggcatcgtggcga 126 |||||||| | |||||||| ||||||||||||||| ||||||| Sbjct: 114491 agcgccttgagccacgtcgagccggacttgggcatggtggcga 114533
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 141 gggcgcgcggcgaagcgcgcgtcggcgac 169 ||||||||||||||||| ||||||||||| Sbjct: 3542289 gggcgcgcggcgaagcgagcgtcggcgac 3542317 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 cggcgaccatggcgccgaccagcgg 187 |||||| |||||||||||||||||| Sbjct: 846043 cggcgagcatggcgccgaccagcgg 846067
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 142 ggcgcgcggcgaagcgcgcgtcgg 165 |||||||||||||||||||||||| Sbjct: 1624778 ggcgcgcggcgaagcgcgcgtcgg 1624801 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 142 ggcgcgcggcgaagcgcgcgtcggcg 167 |||||||||||||| ||||||||||| Sbjct: 780879 ggcgcgcggcgaagggcgcgtcggcg 780854
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 142 ggcgcgcggcgaagcgcgcgtcgg 165 |||||||||||||||||||||||| Sbjct: 2871488 ggcgcgcggcgaagcgcgcgtcgg 2871511 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 142 ggcgcgcggcgaagcgcgcgtcggcg 167 |||||||||||||| ||||||||||| Sbjct: 1300983 ggcgcgcggcgaagggcgcgtcggcg 1300958
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 142 ggcgcgcggcgaagcgcgcgtcgg 165 |||||||||||||||||||||||| Sbjct: 2601649 ggcgcgcggcgaagcgcgcgtcgg 2601672 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 142 ggcgcgcggcgaagcgcgcgtcggcg 167 |||||||||||||| ||||||||||| Sbjct: 1205089 ggcgcgcggcgaagggcgcgtcggcg 1205064
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 142 ggcgcgcggcgaagcgcgcgtcgg 165 |||||||||||||||||||||||| Sbjct: 2287442 ggcgcgcggcgaagcgcgcgtcgg 2287419 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 142 ggcgcgcggcgaagcgcgcgtcggcg 167 |||||||||||||| ||||||||||| Sbjct: 1018180 ggcgcgcggcgaagggcgcgtcggcg 1018155
>ref|XM_493948.1| Oryza sativa (japonica cultivar-group), Ozsa8013 predicted mRNA Length = 990 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 151 cgaagcgcgcgtcggcgaccatggcgc 177 ||||||||| ||||||||||||||||| Sbjct: 514 cgaagcgcgggtcggcgaccatggcgc 488
>gb|AC153977.4| Mus musculus 10 BAC RP24-270K22 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163035 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 495 ctataaatataaatcttttgtgt 517 ||||||||||||||||||||||| Sbjct: 65744 ctataaatataaatcttttgtgt 65722
>dbj|AP002071.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0675A05 Length = 131972 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 151 cgaagcgcgcgtcggcgaccatggcgc 177 ||||||||| ||||||||||||||||| Sbjct: 62608 cgaagcgcgggtcggcgaccatggcgc 62582 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 150 gcgaagcgcgcgtcggcgaccatggcgc 177 ||||||| || ||||||||||||||||| Sbjct: 74054 gcgaagcacgggtcggcgaccatggcgc 74081
>gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence Length = 130161 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 75 gagtagagaagcgccttcatccacgtcgtgccggacttggg 115 ||||| |||||||| || ||||| || |||||||||||||| Sbjct: 42709 gagtacagaagcgctttgatccaagtggtgccggacttggg 42749
>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence Length = 146175 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 75 gagtagagaagcgccttcatccacgtcgtgccggacttggg 115 ||||| |||||||| || ||||| || |||||||||||||| Sbjct: 128883 gagtacagaagcgctttgatccaagtggtgccggacttggg 128923
>emb|AL627310.5| Human DNA sequence from clone RP11-199P24 on chromosome 1, complete sequence Length = 139407 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 490 ttattctataaatataaatcttttg 514 ||||||||||||||||| ||||||| Sbjct: 55430 ttattctataaatataattcttttg 55406
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 ggcgaagcgcgcgtcggcgac 169 ||||||||||||||||||||| Sbjct: 162603 ggcgaagcgcgcgtcggcgac 162623 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 ggcgaagcgcgcgtcggcga 168 |||||||||||||||||||| Sbjct: 83077 ggcgaagcgcgcgtcggcga 83096
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 75 gagtagagaagcgccttcatccacgtcgtgccggacttggg 115 ||||| |||||||| || ||||| || |||||||||||||| Sbjct: 1911053 gagtacagaagcgctttgatccaagtggtgccggacttggg 1911093
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 75 gagtagagaagcgccttcatccacgtcgtgccggacttggg 115 ||||| |||||||| || ||||| || |||||||||||||| Sbjct: 1908774 gagtacagaagcgctttgatccaagtggtgccggacttggg 1908814
>ref|XM_493953.1| Oryza sativa (japonica cultivar-group), Ozsa8018 predicted mRNA Length = 1257 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 150 gcgaagcgcgcgtcggcgaccatggcgc 177 ||||||| || ||||||||||||||||| Sbjct: 185 gcgaagcacgggtcggcgaccatggcgc 158
>ref|XM_472753.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1032 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 gcggcgaagcgcgcgtcggcgacc 170 ||||||||||| |||||||||||| Sbjct: 122 gcggcgaagcgggcgtcggcgacc 99
>gb|AE014834.1| Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence Length = 253001 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 489 attattctataaatataaatcttt 512 ||||| |||||||||||||||||| Sbjct: 69647 attatcctataaatataaatcttt 69624
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 gggcgcgcggcgaagcgcgcgtcg 164 |||||| ||||||||||||||||| Sbjct: 2554840 gggcgcacggcgaagcgcgcgtcg 2554863 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 gcgcgcggcgaagcgcgcgtcggc 166 ||||||||||| |||||||||||| Sbjct: 563071 gcgcgcggcgatgcgcgcgtcggc 563094 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 gggcgcgcggcgaagcgcgcgtcg 164 |||||| ||||||||||||||||| Sbjct: 523806 gggcgcacggcgaagcgcgcgtcg 523783
>ref|XM_654940.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2428.2), mRNA Length = 4191 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 atggaggaggacattttacggcag 365 ||||||||||| |||||||||||| Sbjct: 2143 atggaggaggagattttacggcag 2166
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 tcgtgccggacttgggcatc 119 |||||||||||||||||||| Sbjct: 3705292 tcgtgccggacttgggcatc 3705311
>ref|XM_846007.1| PREDICTED: Canis familiaris similar to MAM domain containing 2 (LOC608871), mRNA Length = 2061 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 agcacggccaggaggacgcc 272 |||||||||||||||||||| Sbjct: 32 agcacggccaggaggacgcc 13
>gb|AC127019.29| Medicago truncatula clone mth2-31b1, complete sequence Length = 122810 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 aaatataaatcttttgtgtt 518 |||||||||||||||||||| Sbjct: 110571 aaatataaatcttttgtgtt 110590
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 gaccatggcgccgaccagcg 186 |||||||||||||||||||| Sbjct: 1876369 gaccatggcgccgaccagcg 1876350
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 gcgaccatggcgccgaccag 184 |||||||||||||||||||| Sbjct: 1054987 gcgaccatggcgccgaccag 1055006
>emb|AJ544865.1|PTY544865 Bovine viral diarrhea virus strain 3142 partial NS2-3 gene for hypothetical protein, genomic RNA Length = 3471 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 tgaaagggtggtcggggctg 44 |||||||||||||||||||| Sbjct: 1898 tgaaagggtggtcggggctg 1917
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 gcgcgcggcgaagcgcgcgtcggc 166 ||||||||||| |||||||||||| Sbjct: 1882398 gcgcgcggcgatgcgcgcgtcggc 1882421 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 gggcgcgcggcgaagcgcgcgtcg 164 |||||| ||||||||||||||||| Sbjct: 1843072 gggcgcacggcgaagcgcgcgtcg 1843049 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 gggcgcgcggcgaagcgcgcgtcg 164 |||||| ||||||||||||||||| Sbjct: 734885 gggcgcacggcgaagcgcgcgtcg 734908
>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16, complete sequence Length = 176383 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 gcggcgaagcgcgcgtcggcgacc 170 ||||||||||| |||||||||||| Sbjct: 64287 gcggcgaagcgggcgtcggcgacc 64264
>emb|BX901979.16| Zebrafish DNA sequence from clone DKEY-74C10 in linkage group 13, complete sequence Length = 115885 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 taaatataaatcttttgtgt 517 |||||||||||||||||||| Sbjct: 3379 taaatataaatcttttgtgt 3360
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 gggcgcgcggcgaagcgcgcgtcg 164 |||||| ||||||||||||||||| Sbjct: 940836 gggcgcacggcgaagcgcgcgtcg 940859 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 gggcgcgcggcgaagcgcgcgtcg 164 |||||| ||||||||||||||||| Sbjct: 465779 gggcgcacggcgaagcgcgcgtcg 465802
>gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-138b18, complete sequence Length = 128810 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 ataaatataaatcttttgtg 516 |||||||||||||||||||| Sbjct: 115689 ataaatataaatcttttgtg 115670
>gb|AF112367.1|AF112367 Plasmodium falciparum S-adenosylmethionine decarboxylase-ornithine decarboxylase gene, complete cds Length = 7622 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 489 attattctataaatataaatcttt 512 ||||| |||||||||||||||||| Sbjct: 1168 attatcctataaatataaatcttt 1191
>dbj|AK104626.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-B03, full insert sequence Length = 1401 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 gcggcgaagcgcgcgtcggcgacc 170 ||||||||||| |||||||||||| Sbjct: 226 gcggcgaagcgggcgtcggcgacc 203
>dbj|AK071020.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080H09, full insert sequence Length = 1548 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 gcggcgaagcgcgcgtcggcgacc 170 ||||||||||| |||||||||||| Sbjct: 229 gcggcgaagcgggcgtcggcgacc 206
>dbj|AK061745.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F10, full insert sequence Length = 1401 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 gcggcgaagcgcgcgtcggcgacc 170 ||||||||||| |||||||||||| Sbjct: 226 gcggcgaagcgggcgtcggcgacc 203
>gb|AY110668.1| Zea mays CL8874_1 mRNA sequence Length = 1522 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ggagcacggccaggaggacg 270 |||||||||||||||||||| Sbjct: 1307 ggagcacggccaggaggacg 1288
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 gcgcggcgaagcgcgcgtcg 164 |||||||||||||||||||| Sbjct: 288772 gcgcggcgaagcgcgcgtcg 288791
>dbj|AB028181.1| Oryza sativa mRNA for OsNAC2 protein, complete cds Length = 1377 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 gcggcgaagcgcgcgtcggcgacc 170 ||||||||||| |||||||||||| Sbjct: 221 gcggcgaagcgggcgtcggcgacc 198
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcatccacgtcgtgccggac 110 |||||||||||||||||||| Sbjct: 1465030 tcatccacgtcgtgccggac 1465049 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,079,214 Number of Sequences: 3902068 Number of extensions: 4079214 Number of successful extensions: 78539 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76805 Number of HSP's gapped (non-prelim): 1734 length of query: 595 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 572 effective length of database: 17,143,297,704 effective search space: 9805966286688 effective search space used: 9805966286688 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
