ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd18l24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TUD_DROME (P25823) Maternal protein tudor 31 2.7
2T2R38_MOUSE (Q7TQA6) Putative taste receptor type 2 member 38 (T... 30 4.6
3NHR10_CAEEL (P41999) Nuclear hormone receptor family member nhr-10 30 6.0
4STX11_MOUSE (Q9D3G5) Syntaxin-11 30 6.0
5C1TC_YEAST (P07245) C-1-tetrahydrofolate synthase, cytoplasmic (... 29 7.8

>TUD_DROME (P25823) Maternal protein tudor|
          Length = 2515

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 2    AGDNDXDPSSDSIEKNTDGLLADGRDQLTNSVYHPLQQAEEENQLHDNVEI 154
            A ++   P+ +   K+ D ++    D       HP+ Q  + NQLH+N++I
Sbjct: 1602 AAESKQAPAQEDPYKDLDCVVLSHCDNPAQFYVHPIDQLSKLNQLHENLQI 1652



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>T2R38_MOUSE (Q7TQA6) Putative taste receptor type 2 member 38 (T2R38) (mT2r31)|
          Length = 331

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = -2

Query: 514 NKLHYYLCLAICLLY-----RFSLPLPVQVRSCLRFTTPVAYEVKLLSHVICTALCLKTF 350
           N++  +L   + LLY     RFS   P+ V S +         V LL   ICTALCL  F
Sbjct: 103 NQVSLWLAACLSLLYCSKIVRFSHTFPLHVASWVSRRFLQMLLVVLLLSCICTALCLWDF 162



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>NHR10_CAEEL (P41999) Nuclear hormone receptor family member nhr-10|
          Length = 395

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 20  DPSSDSIEKNTDGLLADGRDQLTNSVY 100
           +P +D ++ N    L+DGR  +TN++Y
Sbjct: 307 NPDADDVDSNAKKTLSDGRSAITNALY 333



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>STX11_MOUSE (Q9D3G5) Syntaxin-11|
          Length = 287

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 5   GDNDXDPSSDSIEKNTDGLLADGRDQLTNSVYHPLQQAEEENQL 136
           GDND D   + I   TD +L         S+Y  +Q  ++ENQL
Sbjct: 22  GDNDFDAPREDIVFETDNIL--------ESLYRVIQDIQDENQL 57



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>C1TC_YEAST (P07245) C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF|
           synthase) [Includes: Methylenetetrahydrofolate
           dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
           cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
           synthetase (EC 6.3.4.3)]
          Length = 946

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 401 LICNRSGKSKATPDLHRKRKRKSIEKTN 484
           L+  ++GK K TP + R+  R  I+KTN
Sbjct: 484 LVPRKNGKRKFTPSMQRRLNRLGIQKTN 511


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,905,804
Number of Sequences: 219361
Number of extensions: 1462950
Number of successful extensions: 3552
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3549
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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