| Clone Name | basd18k11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190386.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2043 Score = 648 bits (327), Expect = 0.0 Identities = 535/604 (88%), Gaps = 9/604 (1%) Strand = Plus / Plus Query: 2 agtgcgtcctgttcagtgccacgccccggccttcggattc------caaggcggacgtcg 55 |||||||||||||||| |||||||| |||||||| ||||| |||||| ||||||| Sbjct: 734 agtgcgtcctgttcagcgccacgcctcggccttcagattccaattccaaggctgacgtcg 793 Query: 56 atgtcgaagacgacggggagtcgccggcgcccccaccggacctccggtgccccatctccc 115 | | ||||||| || || | |||| ||| || ||||| |||||||||| ||||| | Sbjct: 794 aggctgaagacggcg---agcccccggtgccgccgtcggacttccggtgcccaatctctc 850 Query: 116 tcgatctaatgcgcgacccagtcgtcgccgctagcggtcagacctacgaccgcgagtcga 175 ||||||||||||||||||| ||||||| ||| ||||| ||||| ||||| |||||||||| Sbjct: 851 tcgatctaatgcgcgaccccgtcgtcgtcgcgagcggccagacgtacgatcgcgagtcga 910 Query: 176 tcgaccggtggttcagctccggcaagtcaacttgccccaagacggggcaagtcttggcca 235 ||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| Sbjct: 911 tcgaccggtggttcagctccggcaagtcaacgtgccccaagacagggcaggtcttggcca 970 Query: 236 atttggagctggtgcccaacaagtccctcaagaacctcatctccaagtggtgccgggaga 295 || ||||||| ||| | |||||| |||||||||||||||||||||||||||||||||||| Sbjct: 971 atctggagctcgtgtcgaacaaggccctcaagaacctcatctccaagtggtgccgggaga 1030 Query: 296 acggcgtggccatggaagtctgcgaggccagcaagagcgagcaggcccaggctgtggccg 355 ||||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 1031 acggcgtcgccatggaagcctgcgaggcgagcaagagcgagcaggcccaggcggtggccg 1090 Query: 356 ccaacaaggcggcgctggaggtggcgcgcatgacggcgtcgtatctggtgaagaagctct 415 |||||||||| ||||| |||| |||||||||||||||||||| || ||||||||||| | Sbjct: 1091 ccaacaaggccgcgctcgaggcggcgcgcatgacggcgtcgttccttgtgaagaagctgt 1150 Query: 416 ccgtctccttctcccctgacgcggccaaccgcgtcgtccacgagatccggctgctctcca 475 |||||||||||||||| || || |||||||||||||| ||||||||||||||||| |||| Sbjct: 1151 ccgtctccttctccccagatgccgccaaccgcgtcgtgcacgagatccggctgctatcca 1210 Query: 476 agtccggctcagacaaccgcgcgttcgtcggagaggccggagccgtgccgatgctggttc 535 |||||||||| || ||||| ||||||||||||||||||||||||||||| |||| || | Sbjct: 1211 agtccggctcggagaaccgagcgttcgtcggagaggccggagccgtgcctctgctcgtgc 1270 Query: 536 cgctgctctactccgaggatgccgggctccagctcaacgccgtgaccgcgctgctcaacc 595 | |||||||||||||||||||| |||||||||||||||||||| || |||||||| || | Sbjct: 1271 ccctgctctactccgaggatgcagggctccagctcaacgccgtcacggcgctgcttaatc 1330 Query: 596 tctc 599 |||| Sbjct: 1331 tctc 1334
>gb|AY224536.1| Oryza sativa (japonica cultivar-group) isolate 23274 arm repeat protein mRNA, complete cds Length = 2043 Score = 648 bits (327), Expect = 0.0 Identities = 535/604 (88%), Gaps = 9/604 (1%) Strand = Plus / Plus Query: 2 agtgcgtcctgttcagtgccacgccccggccttcggattc------caaggcggacgtcg 55 |||||||||||||||| |||||||| |||||||| ||||| |||||| ||||||| Sbjct: 734 agtgcgtcctgttcagcgccacgcctcggccttcagattccaattccaaggctgacgtcg 793 Query: 56 atgtcgaagacgacggggagtcgccggcgcccccaccggacctccggtgccccatctccc 115 | | ||||||| || || | |||| ||| || ||||| |||||||||| ||||| | Sbjct: 794 aggctgaagacggcg---agcccccggtgccgccgtcggacttccggtgcccaatctctc 850 Query: 116 tcgatctaatgcgcgacccagtcgtcgccgctagcggtcagacctacgaccgcgagtcga 175 ||||||||||||||||||| ||||||| ||| ||||| ||||| ||||| |||||||||| Sbjct: 851 tcgatctaatgcgcgaccccgtcgtcgtcgcgagcggccagacgtacgatcgcgagtcga 910 Query: 176 tcgaccggtggttcagctccggcaagtcaacttgccccaagacggggcaagtcttggcca 235 ||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| Sbjct: 911 tcgaccggtggttcagctccggcaagtcaacgtgccccaagacagggcaggtcttggcca 970 Query: 236 atttggagctggtgcccaacaagtccctcaagaacctcatctccaagtggtgccgggaga 295 || ||||||| ||| | |||||| |||||||||||||||||||||||||||||||||||| Sbjct: 971 atctggagctcgtgtcgaacaaggccctcaagaacctcatctccaagtggtgccgggaga 1030 Query: 296 acggcgtggccatggaagtctgcgaggccagcaagagcgagcaggcccaggctgtggccg 355 ||||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 1031 acggcgtcgccatggaagcctgcgaggcgagcaagagcgagcaggcccaggcggtggccg 1090 Query: 356 ccaacaaggcggcgctggaggtggcgcgcatgacggcgtcgtatctggtgaagaagctct 415 |||||||||| ||||| |||| |||||||||||||||||||| || ||||||||||| | Sbjct: 1091 ccaacaaggccgcgctcgaggcggcgcgcatgacggcgtcgttccttgtgaagaagctgt 1150 Query: 416 ccgtctccttctcccctgacgcggccaaccgcgtcgtccacgagatccggctgctctcca 475 |||||||||||||||| || || |||||||||||||| ||||||||||||||||| |||| Sbjct: 1151 ccgtctccttctccccagatgccgccaaccgcgtcgtgcacgagatccggctgctatcca 1210 Query: 476 agtccggctcagacaaccgcgcgttcgtcggagaggccggagccgtgccgatgctggttc 535 |||||||||| || ||||| ||||||||||||||||||||||||||||| |||| || | Sbjct: 1211 agtccggctcggagaaccgagcgttcgtcggagaggccggagccgtgcctctgctcgtgc 1270 Query: 536 cgctgctctactccgaggatgccgggctccagctcaacgccgtgaccgcgctgctcaacc 595 | |||||||||||||||||||| |||||||||||||||||||| || |||||||| || | Sbjct: 1271 ccctgctctactccgaggatgcagggctccagctcaacgccgtcacggcgctgcttaatc 1330 Query: 596 tctc 599 |||| Sbjct: 1331 tctc 1334
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 648 bits (327), Expect = 0.0 Identities = 535/604 (88%), Gaps = 9/604 (1%) Strand = Plus / Minus Query: 2 agtgcgtcctgttcagtgccacgccccggccttcggattc------caaggcggacgtcg 55 |||||||||||||||| |||||||| |||||||| ||||| |||||| ||||||| Sbjct: 35180360 agtgcgtcctgttcagcgccacgcctcggccttcagattccaattccaaggctgacgtcg 35180301 Query: 56 atgtcgaagacgacggggagtcgccggcgcccccaccggacctccggtgccccatctccc 115 | | ||||||| || || | |||| ||| || ||||| |||||||||| ||||| | Sbjct: 35180300 aggctgaagacggcg---agcccccggtgccgccgtcggacttccggtgcccaatctctc 35180244 Query: 116 tcgatctaatgcgcgacccagtcgtcgccgctagcggtcagacctacgaccgcgagtcga 175 ||||||||||||||||||| ||||||| ||| ||||| ||||| ||||| |||||||||| Sbjct: 35180243 tcgatctaatgcgcgaccccgtcgtcgtcgcgagcggccagacgtacgatcgcgagtcga 35180184 Query: 176 tcgaccggtggttcagctccggcaagtcaacttgccccaagacggggcaagtcttggcca 235 ||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| Sbjct: 35180183 tcgaccggtggttcagctccggcaagtcaacgtgccccaagacagggcaggtcttggcca 35180124 Query: 236 atttggagctggtgcccaacaagtccctcaagaacctcatctccaagtggtgccgggaga 295 || ||||||| ||| | |||||| |||||||||||||||||||||||||||||||||||| Sbjct: 35180123 atctggagctcgtgtcgaacaaggccctcaagaacctcatctccaagtggtgccgggaga 35180064 Query: 296 acggcgtggccatggaagtctgcgaggccagcaagagcgagcaggcccaggctgtggccg 355 ||||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 35180063 acggcgtcgccatggaagcctgcgaggcgagcaagagcgagcaggcccaggcggtggccg 35180004 Query: 356 ccaacaaggcggcgctggaggtggcgcgcatgacggcgtcgtatctggtgaagaagctct 415 |||||||||| ||||| |||| |||||||||||||||||||| || ||||||||||| | Sbjct: 35180003 ccaacaaggccgcgctcgaggcggcgcgcatgacggcgtcgttccttgtgaagaagctgt 35179944 Query: 416 ccgtctccttctcccctgacgcggccaaccgcgtcgtccacgagatccggctgctctcca 475 |||||||||||||||| || || |||||||||||||| ||||||||||||||||| |||| Sbjct: 35179943 ccgtctccttctccccagatgccgccaaccgcgtcgtgcacgagatccggctgctatcca 35179884 Query: 476 agtccggctcagacaaccgcgcgttcgtcggagaggccggagccgtgccgatgctggttc 535 |||||||||| || ||||| ||||||||||||||||||||||||||||| |||| || | Sbjct: 35179883 agtccggctcggagaaccgagcgttcgtcggagaggccggagccgtgcctctgctcgtgc 35179824 Query: 536 cgctgctctactccgaggatgccgggctccagctcaacgccgtgaccgcgctgctcaacc 595 | |||||||||||||||||||| |||||||||||||||||||| || |||||||| || | Sbjct: 35179823 ccctgctctactccgaggatgcagggctccagctcaacgccgtcacggcgctgcttaatc 35179764 Query: 596 tctc 599 |||| Sbjct: 35179763 tctc 35179760 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 362 aggcggcgctggaggtggcgcg 383 |||||||||||||||||||||| Sbjct: 30707460 aggcggcgctggaggtggcgcg 30707439
>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031D02 Length = 183692 Score = 648 bits (327), Expect = 0.0 Identities = 535/604 (88%), Gaps = 9/604 (1%) Strand = Plus / Minus Query: 2 agtgcgtcctgttcagtgccacgccccggccttcggattc------caaggcggacgtcg 55 |||||||||||||||| |||||||| |||||||| ||||| |||||| ||||||| Sbjct: 59444 agtgcgtcctgttcagcgccacgcctcggccttcagattccaattccaaggctgacgtcg 59385 Query: 56 atgtcgaagacgacggggagtcgccggcgcccccaccggacctccggtgccccatctccc 115 | | ||||||| || || | |||| ||| || ||||| |||||||||| ||||| | Sbjct: 59384 aggctgaagacggcg---agcccccggtgccgccgtcggacttccggtgcccaatctctc 59328 Query: 116 tcgatctaatgcgcgacccagtcgtcgccgctagcggtcagacctacgaccgcgagtcga 175 ||||||||||||||||||| ||||||| ||| ||||| ||||| ||||| |||||||||| Sbjct: 59327 tcgatctaatgcgcgaccccgtcgtcgtcgcgagcggccagacgtacgatcgcgagtcga 59268 Query: 176 tcgaccggtggttcagctccggcaagtcaacttgccccaagacggggcaagtcttggcca 235 ||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| Sbjct: 59267 tcgaccggtggttcagctccggcaagtcaacgtgccccaagacagggcaggtcttggcca 59208 Query: 236 atttggagctggtgcccaacaagtccctcaagaacctcatctccaagtggtgccgggaga 295 || ||||||| ||| | |||||| |||||||||||||||||||||||||||||||||||| Sbjct: 59207 atctggagctcgtgtcgaacaaggccctcaagaacctcatctccaagtggtgccgggaga 59148 Query: 296 acggcgtggccatggaagtctgcgaggccagcaagagcgagcaggcccaggctgtggccg 355 ||||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 59147 acggcgtcgccatggaagcctgcgaggcgagcaagagcgagcaggcccaggcggtggccg 59088 Query: 356 ccaacaaggcggcgctggaggtggcgcgcatgacggcgtcgtatctggtgaagaagctct 415 |||||||||| ||||| |||| |||||||||||||||||||| || ||||||||||| | Sbjct: 59087 ccaacaaggccgcgctcgaggcggcgcgcatgacggcgtcgttccttgtgaagaagctgt 59028 Query: 416 ccgtctccttctcccctgacgcggccaaccgcgtcgtccacgagatccggctgctctcca 475 |||||||||||||||| || || |||||||||||||| ||||||||||||||||| |||| Sbjct: 59027 ccgtctccttctccccagatgccgccaaccgcgtcgtgcacgagatccggctgctatcca 58968 Query: 476 agtccggctcagacaaccgcgcgttcgtcggagaggccggagccgtgccgatgctggttc 535 |||||||||| || ||||| ||||||||||||||||||||||||||||| |||| || | Sbjct: 58967 agtccggctcggagaaccgagcgttcgtcggagaggccggagccgtgcctctgctcgtgc 58908 Query: 536 cgctgctctactccgaggatgccgggctccagctcaacgccgtgaccgcgctgctcaacc 595 | |||||||||||||||||||| |||||||||||||||||||| || |||||||| || | Sbjct: 58907 ccctgctctactccgaggatgcagggctccagctcaacgccgtcacggcgctgcttaatc 58848 Query: 596 tctc 599 |||| Sbjct: 58847 tctc 58844
>dbj|AK065307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O10, full insert sequence Length = 2414 Score = 648 bits (327), Expect = 0.0 Identities = 535/604 (88%), Gaps = 9/604 (1%) Strand = Plus / Plus Query: 2 agtgcgtcctgttcagtgccacgccccggccttcggattc------caaggcggacgtcg 55 |||||||||||||||| |||||||| |||||||| ||||| |||||| ||||||| Sbjct: 905 agtgcgtcctgttcagcgccacgcctcggccttcagattccaattccaaggctgacgtcg 964 Query: 56 atgtcgaagacgacggggagtcgccggcgcccccaccggacctccggtgccccatctccc 115 | | ||||||| || || | |||| ||| || ||||| |||||||||| ||||| | Sbjct: 965 aggctgaagacggcg---agcccccggtgccgccgtcggacttccggtgcccaatctctc 1021 Query: 116 tcgatctaatgcgcgacccagtcgtcgccgctagcggtcagacctacgaccgcgagtcga 175 ||||||||||||||||||| ||||||| ||| ||||| ||||| ||||| |||||||||| Sbjct: 1022 tcgatctaatgcgcgaccccgtcgtcgtcgcgagcggccagacgtacgatcgcgagtcga 1081 Query: 176 tcgaccggtggttcagctccggcaagtcaacttgccccaagacggggcaagtcttggcca 235 ||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| Sbjct: 1082 tcgaccggtggttcagctccggcaagtcaacgtgccccaagacagggcaggtcttggcca 1141 Query: 236 atttggagctggtgcccaacaagtccctcaagaacctcatctccaagtggtgccgggaga 295 || ||||||| ||| | |||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1142 atctggagctcgtgtcgaacaaggccctcaagaacctcatctccaagtggtgccgggaga 1201 Query: 296 acggcgtggccatggaagtctgcgaggccagcaagagcgagcaggcccaggctgtggccg 355 ||||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 1202 acggcgtcgccatggaagcctgcgaggcgagcaagagcgagcaggcccaggcggtggccg 1261 Query: 356 ccaacaaggcggcgctggaggtggcgcgcatgacggcgtcgtatctggtgaagaagctct 415 |||||||||| ||||| |||| |||||||||||||||||||| || ||||||||||| | Sbjct: 1262 ccaacaaggccgcgctcgaggcggcgcgcatgacggcgtcgttccttgtgaagaagctgt 1321 Query: 416 ccgtctccttctcccctgacgcggccaaccgcgtcgtccacgagatccggctgctctcca 475 |||||||||||||||| || || |||||||||||||| ||||||||||||||||| |||| Sbjct: 1322 ccgtctccttctccccggatgccgccaaccgcgtcgtgcacgagatccggctgctatcca 1381 Query: 476 agtccggctcagacaaccgcgcgttcgtcggagaggccggagccgtgccgatgctggttc 535 |||||||||| || ||||| ||||||||||||||||||||||||||||| |||| || | Sbjct: 1382 agtccggctcggagaaccgagcgttcgtcggagaggccggagccgtgcctctgctcgtgc 1441 Query: 536 cgctgctctactccgaggatgccgggctccagctcaacgccgtgaccgcgctgctcaacc 595 | |||||||||||||||||||| |||||||||||||||||||| || |||||||| || | Sbjct: 1442 ccctgctctactccgaggatgcagggctccagctcaacgccgtcacggcgctgcttaatc 1501 Query: 596 tctc 599 |||| Sbjct: 1502 tctc 1505
>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0018K15, complete sequence Length = 168519 Score = 327 bits (165), Expect = 2e-86 Identities = 441/533 (82%) Strand = Plus / Plus Query: 64 gacgacggggagtcgccggcgcccccaccggacctccggtgccccatctccctcgatcta 123 ||||||| ||| ||||| |||| || |||||| |||||||||||||||| |||||||| Sbjct: 5844 gacgacgccgagccgccgtcgccgccgccggacttccggtgccccatctctctcgatctg 5903 Query: 124 atgcgcgacccagtcgtcgccgctagcggtcagacctacgaccgcgagtcgatcgaccgg 183 ||||||||||| || || | || ||||| ||||| |||||||| ||||| ||| |||| Sbjct: 5904 atgcgcgacccggttgtgtcggcgagcggccagacgtacgaccgggagtccatcacccgg 5963 Query: 184 tggttcagctccggcaagtcaacttgccccaagacggggcaagtcttggccaatttggag 243 |||||| ||||||||||||| || ||||||||||| ||||| || |||||||| ||||| Sbjct: 5964 tggttcggctccggcaagtcgacgtgccccaagactgggcaggtgctggccaatctggag 6023 Query: 244 ctggtgcccaacaagtccctcaagaacctcatctccaagtggtgccgggagaacggcgtg 303 || || ||||||||| | ||||||||| | ||||| ||||||||||||||||||||| Sbjct: 6024 cttgtccccaacaaggcgctcaagaacttgatctcgcggtggtgccgggagaacggcgtc 6083 Query: 304 gccatggaagtctgcgaggccagcaagagcgagcaggcccaggctgtggccgccaacaag 363 |||||||| || |||| | |||||| ||||| || | || ||| |||| |||||| Sbjct: 6084 gccatggagagctccgagccaagcaagcccgagccagcgccggtggtgaccgcgaacaag 6143 Query: 364 gcggcgctggaggtggcgcgcatgacggcgtcgtatctggtgaagaagctctccgtctcc 423 |||||| |||||| |||||||||||||||||||| || || |||||||||||||||||| Sbjct: 6144 gcggcgttggaggcggcgcgcatgacggcgtcgttcctcgtcaagaagctctccgtctcc 6203 Query: 424 ttctcccctgacgcggccaaccgcgtcgtccacgagatccggctgctctccaagtccggc 483 |||||||| | ||||||||||||||| || ||||||||||||| |||| ||| ||||||| Sbjct: 6204 ttctcccccgccgcggccaaccgcgtggtgcacgagatccggcagctcgccaggtccggc 6263 Query: 484 tcagacaaccgcgcgttcgtcggagaggccggagccgtgccgatgctggttccgctgctc 543 |||| ||||| ||| |||| |||||||| ||||| ||| | || || ||||||||| Sbjct: 6264 aacgacacgcgcgccttcatcggggaggccggcgccgtcccgctcctcgtgccgctgctc 6323 Query: 544 tactccgaggatgccgggctccagctcaacgccgtgaccgcgctgctcaacct 596 ||||||| || ||| ||||||||||||||| || |||||||||||||| Sbjct: 6324 cactccgacgacaccgccacccagctcaacgccgtcacggcgctgctcaacct 6376
>gb|AY224537.1| Oryza sativa (japonica cultivar-group) isolate 23275 arm repeat protein mRNA, complete cds Length = 2055 Score = 327 bits (165), Expect = 2e-86 Identities = 441/533 (82%) Strand = Plus / Plus Query: 64 gacgacggggagtcgccggcgcccccaccggacctccggtgccccatctccctcgatcta 123 ||||||| ||| ||||| |||| || |||||| |||||||||||||||| |||||||| Sbjct: 802 gacgacgccgagccgccgtcgccgccgccggacttccggtgccccatctctctcgatctg 861 Query: 124 atgcgcgacccagtcgtcgccgctagcggtcagacctacgaccgcgagtcgatcgaccgg 183 ||||||||||| || || | || ||||| ||||| |||||||| ||||| ||| |||| Sbjct: 862 atgcgcgacccggttgtgtcggcgagcggccagacgtacgaccgggagtccatcacccgg 921 Query: 184 tggttcagctccggcaagtcaacttgccccaagacggggcaagtcttggccaatttggag 243 |||||| ||||||||||||| || ||||||||||| ||||| || |||||||| ||||| Sbjct: 922 tggttcggctccggcaagtcgacgtgccccaagactgggcaggtgctggccaatctggag 981 Query: 244 ctggtgcccaacaagtccctcaagaacctcatctccaagtggtgccgggagaacggcgtg 303 || || ||||||||| | ||||||||| | ||||| ||||||||||||||||||||| Sbjct: 982 cttgtccccaacaaggcgctcaagaacttgatctcgcggtggtgccgggagaacggcgtc 1041 Query: 304 gccatggaagtctgcgaggccagcaagagcgagcaggcccaggctgtggccgccaacaag 363 |||||||| || |||| | |||||| ||||| || | || ||| |||| |||||| Sbjct: 1042 gccatggagagctccgagccaagcaagcccgagccagcgccggtggtgaccgcgaacaag 1101 Query: 364 gcggcgctggaggtggcgcgcatgacggcgtcgtatctggtgaagaagctctccgtctcc 423 |||||| |||||| |||||||||||||||||||| || || |||||||||||||||||| Sbjct: 1102 gcggcgttggaggcggcgcgcatgacggcgtcgttcctcgtcaagaagctctccgtctcc 1161 Query: 424 ttctcccctgacgcggccaaccgcgtcgtccacgagatccggctgctctccaagtccggc 483 |||||||| | ||||||||||||||| || ||||||||||||| |||| ||| ||||||| Sbjct: 1162 ttctcccccgccgcggccaaccgcgtggtgcacgagatccggcagctcgccaggtccggc 1221 Query: 484 tcagacaaccgcgcgttcgtcggagaggccggagccgtgccgatgctggttccgctgctc 543 |||| ||||| ||| |||| |||||||| ||||| ||| | || || ||||||||| Sbjct: 1222 aacgacacgcgcgccttcatcggggaggccggcgccgtcccgctcctcgtgccgctgctc 1281 Query: 544 tactccgaggatgccgggctccagctcaacgccgtgaccgcgctgctcaacct 596 ||||||| || ||| ||||||||||||||| || |||||||||||||| Sbjct: 1282 cactccgacgacaccgccacccagctcaacgccgtcacggcgctgctcaacct 1334
>gb|AC144743.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0009H09, complete sequence Length = 148740 Score = 327 bits (165), Expect = 2e-86 Identities = 441/533 (82%) Strand = Plus / Plus Query: 64 gacgacggggagtcgccggcgcccccaccggacctccggtgccccatctccctcgatcta 123 ||||||| ||| ||||| |||| || |||||| |||||||||||||||| |||||||| Sbjct: 144365 gacgacgccgagccgccgtcgccgccgccggacttccggtgccccatctctctcgatctg 144424 Query: 124 atgcgcgacccagtcgtcgccgctagcggtcagacctacgaccgcgagtcgatcgaccgg 183 ||||||||||| || || | || ||||| ||||| |||||||| ||||| ||| |||| Sbjct: 144425 atgcgcgacccggttgtgtcggcgagcggccagacgtacgaccgggagtccatcacccgg 144484 Query: 184 tggttcagctccggcaagtcaacttgccccaagacggggcaagtcttggccaatttggag 243 |||||| ||||||||||||| || ||||||||||| ||||| || |||||||| ||||| Sbjct: 144485 tggttcggctccggcaagtcgacgtgccccaagactgggcaggtgctggccaatctggag 144544 Query: 244 ctggtgcccaacaagtccctcaagaacctcatctccaagtggtgccgggagaacggcgtg 303 || || ||||||||| | ||||||||| | ||||| ||||||||||||||||||||| Sbjct: 144545 cttgtccccaacaaggcgctcaagaacttgatctcgcggtggtgccgggagaacggcgtc 144604 Query: 304 gccatggaagtctgcgaggccagcaagagcgagcaggcccaggctgtggccgccaacaag 363 |||||||| || |||| | |||||| ||||| || | || ||| |||| |||||| Sbjct: 144605 gccatggagagctccgagccaagcaagcccgagccagcgccggtggtgaccgcgaacaag 144664 Query: 364 gcggcgctggaggtggcgcgcatgacggcgtcgtatctggtgaagaagctctccgtctcc 423 |||||| |||||| |||||||||||||||||||| || || |||||||||||||||||| Sbjct: 144665 gcggcgttggaggcggcgcgcatgacggcgtcgttcctcgtcaagaagctctccgtctcc 144724 Query: 424 ttctcccctgacgcggccaaccgcgtcgtccacgagatccggctgctctccaagtccggc 483 |||||||| | ||||||||||||||| || ||||||||||||| |||| ||| ||||||| Sbjct: 144725 ttctcccccgccgcggccaaccgcgtggtgcacgagatccggcagctcgccaggtccggc 144784 Query: 484 tcagacaaccgcgcgttcgtcggagaggccggagccgtgccgatgctggttccgctgctc 543 |||| ||||| ||| |||| |||||||| ||||| ||| | || || ||||||||| Sbjct: 144785 aacgacacgcgcgccttcatcggggaggccggcgccgtcccgctcctcgtgccgctgctc 144844 Query: 544 tactccgaggatgccgggctccagctcaacgccgtgaccgcgctgctcaacct 596 ||||||| || ||| ||||||||||||||| || |||||||||||||| Sbjct: 144845 cactccgacgacaccgccacccagctcaacgccgtcacggcgctgctcaacct 144897
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 327 bits (165), Expect = 2e-86 Identities = 441/533 (82%) Strand = Plus / Plus Query: 64 gacgacggggagtcgccggcgcccccaccggacctccggtgccccatctccctcgatcta 123 ||||||| ||| ||||| |||| || |||||| |||||||||||||||| |||||||| Sbjct: 23320308 gacgacgccgagccgccgtcgccgccgccggacttccggtgccccatctctctcgatctg 23320367 Query: 124 atgcgcgacccagtcgtcgccgctagcggtcagacctacgaccgcgagtcgatcgaccgg 183 ||||||||||| || || | || ||||| ||||| |||||||| ||||| ||| |||| Sbjct: 23320368 atgcgcgacccggttgtgtcggcgagcggccagacgtacgaccgggagtccatcacccgg 23320427 Query: 184 tggttcagctccggcaagtcaacttgccccaagacggggcaagtcttggccaatttggag 243 |||||| ||||||||||||| || ||||||||||| ||||| || |||||||| ||||| Sbjct: 23320428 tggttcggctccggcaagtcgacgtgccccaagactgggcaggtgctggccaatctggag 23320487 Query: 244 ctggtgcccaacaagtccctcaagaacctcatctccaagtggtgccgggagaacggcgtg 303 || || ||||||||| | ||||||||| | ||||| ||||||||||||||||||||| Sbjct: 23320488 cttgtccccaacaaggcgctcaagaacttgatctcgcggtggtgccgggagaacggcgtc 23320547 Query: 304 gccatggaagtctgcgaggccagcaagagcgagcaggcccaggctgtggccgccaacaag 363 |||||||| || |||| | |||||| ||||| || | || ||| |||| |||||| Sbjct: 23320548 gccatggagagctccgagccaagcaagcccgagccagcgccggtggtgaccgcgaacaag 23320607 Query: 364 gcggcgctggaggtggcgcgcatgacggcgtcgtatctggtgaagaagctctccgtctcc 423 |||||| |||||| |||||||||||||||||||| || || |||||||||||||||||| Sbjct: 23320608 gcggcgttggaggcggcgcgcatgacggcgtcgttcctcgtcaagaagctctccgtctcc 23320667 Query: 424 ttctcccctgacgcggccaaccgcgtcgtccacgagatccggctgctctccaagtccggc 483 |||||||| | ||||||||||||||| || ||||||||||||| |||| ||| ||||||| Sbjct: 23320668 ttctcccccgccgcggccaaccgcgtggtgcacgagatccggcagctcgccaggtccggc 23320727 Query: 484 tcagacaaccgcgcgttcgtcggagaggccggagccgtgccgatgctggttccgctgctc 543 |||| ||||| ||| |||| |||||||| ||||| ||| | || || ||||||||| Sbjct: 23320728 aacgacacgcgcgccttcatcggggaggccggcgccgtcccgctcctcgtgccgctgctc 23320787 Query: 544 tactccgaggatgccgggctccagctcaacgccgtgaccgcgctgctcaacct 596 ||||||| || ||| ||||||||||||||| || |||||||||||||| Sbjct: 23320788 cactccgacgacaccgccacccagctcaacgccgtcacggcgctgctcaacct 23320840 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 53 tcgatgtcgaagacgacggggag 75 ||||||||||||||||||||||| Sbjct: 18949377 tcgatgtcgaagacgacggggag 18949399
>dbj|AK099529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031J19, full insert sequence Length = 1669 Score = 327 bits (165), Expect = 2e-86 Identities = 441/533 (82%) Strand = Plus / Plus Query: 64 gacgacggggagtcgccggcgcccccaccggacctccggtgccccatctccctcgatcta 123 ||||||| ||| ||||| |||| || |||||| |||||||||||||||| |||||||| Sbjct: 205 gacgacgccgagccgccgtcgccgccgccggacttccggtgccccatctctctcgatctg 264 Query: 124 atgcgcgacccagtcgtcgccgctagcggtcagacctacgaccgcgagtcgatcgaccgg 183 ||||||||||| || || | || ||||| ||||| |||||||| ||||| ||| |||| Sbjct: 265 atgcgcgacccggttgtgtcggcgagcggccagacgtacgaccgggagtccatcacccgg 324 Query: 184 tggttcagctccggcaagtcaacttgccccaagacggggcaagtcttggccaatttggag 243 |||||| ||||||||||||| || ||||||||||| ||||| || |||||||| ||||| Sbjct: 325 tggttcggctccggcaagtcgacgtgccccaagactgggcaggtgctggccaatctggag 384 Query: 244 ctggtgcccaacaagtccctcaagaacctcatctccaagtggtgccgggagaacggcgtg 303 || || ||||||||| | ||||||||| | ||||| ||||||||||||||||||||| Sbjct: 385 cttgtccccaacaaggcgctcaagaacttgatctcgcggtggtgccgggagaacggcgtc 444 Query: 304 gccatggaagtctgcgaggccagcaagagcgagcaggcccaggctgtggccgccaacaag 363 |||||||| || |||| | |||||| ||||| || | || ||| |||| |||||| Sbjct: 445 gccatggagagctccgagccaagcaagcccgagccagcgccggtggtgaccgcgaacaag 504 Query: 364 gcggcgctggaggtggcgcgcatgacggcgtcgtatctggtgaagaagctctccgtctcc 423 |||||| |||||| |||||||||||||||||||| || || |||||||||||||||||| Sbjct: 505 gcggcgttggaggcggcgcgcatgacggcgtcgttcctcgtcaagaagctctccgtctcc 564 Query: 424 ttctcccctgacgcggccaaccgcgtcgtccacgagatccggctgctctccaagtccggc 483 |||||||| | ||||||||||||||| || ||||||||||||| |||| ||| ||||||| Sbjct: 565 ttctcccccgccgcggccaaccgcgtggtgcacgagatccggcagctcgccaggtccggc 624 Query: 484 tcagacaaccgcgcgttcgtcggagaggccggagccgtgccgatgctggttccgctgctc 543 |||| ||||| ||| |||| |||||||| ||||| ||| | || || ||||||||| Sbjct: 625 aacgacacgcgcgccttcatcggggaggccggcgccgtcccgctcctcgtgccgctgctc 684 Query: 544 tactccgaggatgccgggctccagctcaacgccgtgaccgcgctgctcaacct 596 ||||||| || ||| ||||||||||||||| || |||||||||||||| Sbjct: 685 cactccgacgacaccgccacccagctcaacgccgtcacggcgctgctcaacct 737
>ref|NM_195055.1| Oryza sativa (japonica cultivar-group) putative arm repeat-containing protein (OSJNBb0081F12.16), mRNA Length = 465 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 98 tccggtgccccatctccctcgatctaatgcgcgacccagtcgtcgccgctagcggtcaga 157 |||||||||| ||||| |||||||||||||||||||| |||||| ||| ||||| |||| Sbjct: 329 tccggtgcccaatctctctcgatctaatgcgcgaccccatcgtcgtcgcaagcggccaga 388 Query: 158 cctacgaccgcgagtcgatcgaccggtgg 186 | ||||| ||||| |||| || ||||||| Sbjct: 389 cgtacgatcgcgactcgagcggccggtgg 417
>gb|AC090488.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0081F12 from chromosome 10, complete sequence Length = 128388 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 98 tccggtgccccatctccctcgatctaatgcgcgacccagtcgtcgccgctagcggtcaga 157 |||||||||| ||||| |||||||||||||||||||| |||||| ||| ||||| |||| Sbjct: 75499 tccggtgcccaatctctctcgatctaatgcgcgaccccatcgtcgtcgcaagcggccaga 75558 Query: 158 cctacgaccgcgagtcgatcgaccggtgg 186 | ||||| ||||| |||| || ||||||| Sbjct: 75559 cgtacgatcgcgactcgagcggccggtgg 75587
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 98 tccggtgccccatctccctcgatctaatgcgcgacccagtcgtcgccgctagcggtcaga 157 |||||||||| ||||| |||||||||||||||||||| |||||| ||| ||||| |||| Sbjct: 4413891 tccggtgcccaatctctctcgatctaatgcgcgaccccatcgtcgtcgcaagcggccaga 4413950 Query: 158 cctacgaccgcgagtcgatcgaccggtgg 186 | ||||| ||||| |||| || ||||||| Sbjct: 4413951 cgtacgatcgcgactcgagcggccggtgg 4413979
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 98 tccggtgccccatctccctcgatctaatgcgcgacccagtcgtcgccgctagcggtcaga 157 |||||||||| ||||| |||||||||||||||||||| |||||| ||| ||||| |||| Sbjct: 4414712 tccggtgcccaatctctctcgatctaatgcgcgaccccatcgtcgtcgcaagcggccaga 4414771 Query: 158 cctacgaccgcgagtcgatcgaccggtgg 186 | ||||| ||||| |||| || ||||||| Sbjct: 4414772 cgtacgatcgcgactcgagcggccggtgg 4414800
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 73.8 bits (37), Expect = 6e-10 Identities = 79/93 (84%) Strand = Plus / Minus Query: 92 cggacctccggtgccccatctccctcgatctaatgcgcgacccagtcgtcgccgctagcg 151 ||||| |||||||||| ||||| |||||||||||||||||||| || |||| || | || Sbjct: 6371708 cggacttccggtgcccaatctctctcgatctaatgcgcgaccccgttgtcgtggcaaacg 6371649 Query: 152 gtcagacctacgaccgcgagtcgatcgaccggt 184 | ||||| ||||| |||||||||| || ||||| Sbjct: 6371648 gccagacgtacgatcgcgagtcgagcggccggt 6371616 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 2 agtgcgtcctgttcagtgccacgccccggccttcggattccaa 44 |||||||||||||||| |||||||| |||||||| || ||||| Sbjct: 16486548 agtgcgtcctgttcagcgccacgcctcggccttcagactccaa 16486590
>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete sequence Length = 146568 Score = 73.8 bits (37), Expect = 6e-10 Identities = 79/93 (84%) Strand = Plus / Minus Query: 92 cggacctccggtgccccatctccctcgatctaatgcgcgacccagtcgtcgccgctagcg 151 ||||| |||||||||| ||||| |||||||||||||||||||| || |||| || | || Sbjct: 51834 cggacttccggtgcccaatctctctcgatctaatgcgcgaccccgttgtcgtggcaaacg 51775 Query: 152 gtcagacctacgaccgcgagtcgatcgaccggt 184 | ||||| ||||| |||||||||| || ||||| Sbjct: 51774 gccagacgtacgatcgcgagtcgagcggccggt 51742
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 73.8 bits (37), Expect = 6e-10 Identities = 79/93 (84%) Strand = Plus / Minus Query: 92 cggacctccggtgccccatctccctcgatctaatgcgcgacccagtcgtcgccgctagcg 151 ||||| |||||||||| ||||| |||||||||||||||||||| || |||| || | || Sbjct: 6370921 cggacttccggtgcccaatctctctcgatctaatgcgcgaccccgttgtcgtggcaaacg 6370862 Query: 152 gtcagacctacgaccgcgagtcgatcgaccggt 184 | ||||| ||||| |||||||||| || ||||| Sbjct: 6370861 gccagacgtacgatcgcgagtcgagcggccggt 6370829 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 2 agtgcgtcctgttcagtgccacgccccggccttcggattccaa 44 |||||||||||||||| |||||||| |||||||| || ||||| Sbjct: 16480181 agtgcgtcctgttcagcgccacgcctcggccttcagactccaa 16480223
>gb|AC134886.5| Oryza sativa chromosome 3 BAC OSJNBa0002D18 genomic sequence, complete sequence Length = 145714 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 2 agtgcgtcctgttcagtgccacgccccggccttcggattccaa 44 |||||||||||||||| |||||||| |||||||| || ||||| Sbjct: 97785 agtgcgtcctgttcagcgccacgcctcggccttcagactccaa 97743
>ref|XM_466137.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1272 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 98 tccggtgccccatctccctcgatctaatgcgcgaccc 134 ||||||||||||||||||| || || ||||||||||| Sbjct: 83 tccggtgccccatctccctggagctgatgcgcgaccc 119
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 98 tccggtgccccatctccctcgatctaatgcgcgaccc 134 ||||||||||||||||||| || || ||||||||||| Sbjct: 20608934 tccggtgccccatctccctggagctgatgcgcgaccc 20608898 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 98 tccggtgccccatctccctcga 119 |||||||||||||||||||||| Sbjct: 20101788 tccggtgccccatctccctcga 20101809
>dbj|AP005611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21 Length = 137959 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 98 tccggtgccccatctccctcgatctaatgcgcgaccc 134 ||||||||||||||||||| || || ||||||||||| Sbjct: 104492 tccggtgccccatctccctggagctgatgcgcgaccc 104456
>dbj|AP005469.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0040I22 Length = 134273 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 98 tccggtgccccatctccctcgatctaatgcgcgaccc 134 ||||||||||||||||||| || || ||||||||||| Sbjct: 5789 tccggtgccccatctccctggagctgatgcgcgaccc 5753
>emb|X70255.1|SLAMYALAM S.lividans of amy gene encoding alpha-amylase Length = 3055 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Plus Query: 251 ccaacaagtccctcaagaacctcatctccaag 282 |||||||| |||||||||||||||||||||| Sbjct: 597 ccaacaaggacctcaagaacctcatctccaag 628
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Minus Query: 251 ccaacaagtccctcaagaacctcatctccaag 282 |||||||| |||||||||||||||||||||| Sbjct: 291824 ccaacaaggacctcaagaacctcatctccaag 291793
>gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1764_D01, complete sequence Length = 164709 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 53 tcgatgtcgaagacgacggggag 75 ||||||||||||||||||||||| Sbjct: 116755 tcgatgtcgaagacgacggggag 116777
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 362 aggcggcgctggaggtggcgcg 383 |||||||||||||||||||||| Sbjct: 1922528 aggcggcgctggaggtggcgcg 1922549 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 tggccgccaacaaggcggcgctgg 373 |||||||||| ||||||||||||| Sbjct: 3802544 tggccgccaagaaggcggcgctgg 3802521
>ref|XM_472445.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1356 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 98 tccggtgccccatctccctcga 119 |||||||||||||||||||||| Sbjct: 122 tccggtgccccatctccctcga 143
>ref|NM_191573.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1311 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 362 aggcggcgctggaggtggcgcg 383 |||||||||||||||||||||| Sbjct: 108 aggcggcgctggaggtggcgcg 87
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 98 tccggtgccccatctccctcga 119 |||||||||||||||||||||| Sbjct: 20699935 tccggtgccccatctccctcga 20699956
>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1060H01 Length = 157987 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 362 aggcggcgctggaggtggcgcg 383 |||||||||||||||||||||| Sbjct: 149737 aggcggcgctggaggtggcgcg 149716
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 77 cgccggcgcccccaccggacct 98 |||||||||||||||||||||| Sbjct: 3595315 cgccggcgcccccaccggacct 3595294 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 acgcggccaaccgcgtcgtc 453 |||||||||||||||||||| Sbjct: 8742343 acgcggccaaccgcgtcgtc 8742362
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 573 cgccgtgaccgcgctgctcaac 594 |||||||||||||||||||||| Sbjct: 4636881 cgccgtgaccgcgctgctcaac 4636860
>dbj|AP004847.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1298_H07 Length = 106434 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 98 tccggtgccccatctccctcga 119 |||||||||||||||||||||| Sbjct: 50311 tccggtgccccatctccctcga 50332
>dbj|AK121255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102B22, full insert sequence Length = 1653 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 98 tccggtgccccatctccctcga 119 |||||||||||||||||||||| Sbjct: 178 tccggtgccccatctccctcga 199
>dbj|AK100689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114D10, full insert sequence Length = 3206 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 362 aggcggcgctggaggtggcgcg 383 |||||||||||||||||||||| Sbjct: 1722 aggcggcgctggaggtggcgcg 1701
>dbj|AK069723.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027A08, full insert sequence Length = 1699 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 362 aggcggcgctggaggtggcgcg 383 |||||||||||||||||||||| Sbjct: 192 aggcggcgctggaggtggcgcg 171
>emb|AL606618.4|OSJN00062 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0108J11, complete sequence Length = 124629 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 98 tccggtgccccatctccctcga 119 |||||||||||||||||||||| Sbjct: 46086 tccggtgccccatctccctcga 46107
>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster Length = 104326 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 77 cgccggcgcccccaccggacct 98 |||||||||||||||||||||| Sbjct: 42490 cgccggcgcccccaccggacct 42511
>ref|XM_482405.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2073 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 154 cagacctacgaccgcgagtcgatcgaccggtgg 186 |||||||||||||||| ||||||| | |||||| Sbjct: 916 cagacctacgaccgcgcgtcgatcaagcggtgg 948
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 tggtgccgggagaacggcgtg 303 ||||||||||||||||||||| Sbjct: 3525726 tggtgccgggagaacggcgtg 3525706 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 tggtgccgggagaacggcgtg 303 ||||||||||||||||||||| Sbjct: 2627438 tggtgccgggagaacggcgtg 2627458 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 tggtgccgggagaacggcgtg 303 ||||||||||||||||||||| Sbjct: 1989043 tggtgccgggagaacggcgtg 1989063 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 tggtgccgggagaacggcgtg 303 ||||||||||||||||||||| Sbjct: 1702873 tggtgccgggagaacggcgtg 1702893
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 tcgtccacgagatccggctgc 469 ||||||||||||||||||||| Sbjct: 1954024 tcgtccacgagatccggctgc 1954004
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 154 cagacctacgaccgcgagtcgatcgaccggtgg 186 |||||||||||||||| ||||||| | |||||| Sbjct: 19869022 cagacctacgaccgcgcgtcgatcaagcggtgg 19869054
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 364 gcggcgctggaggtggcgcgc 384 ||||||||||||||||||||| Sbjct: 1915589 gcggcgctggaggtggcgcgc 1915569
>dbj|AP004667.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0433E10 Length = 144643 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 154 cagacctacgaccgcgagtcgatcgaccggtgg 186 |||||||||||||||| ||||||| | |||||| Sbjct: 37200 cagacctacgaccgcgcgtcgatcaagcggtgg 37232
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 gcgagtcgatcgaccggtgg 186 |||||||||||||||||||| Sbjct: 1344347 gcgagtcgatcgaccggtgg 1344328
>ref|XM_506432.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1060_D03.106 mRNA Length = 1983 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 577 gtgaccgcgctgctcaacctctcg 600 ||||| |||||||||||||||||| Sbjct: 835 gtgacggcgctgctcaacctctcg 858
>ref|XM_478916.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1709 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 577 gtgaccgcgctgctcaacctctcg 600 ||||| |||||||||||||||||| Sbjct: 838 gtgacggcgctgctcaacctctcg 861
>ref|XR_003144.1| PREDICTED: Mus musculus similar to zygote arrest 1 (LOC670820), mRNA Length = 1597 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 ctccgaggatgccgggctcc 565 |||||||||||||||||||| Sbjct: 574 ctccgaggatgccgggctcc 555
>ref|XR_001979.1| PREDICTED: Mus musculus similar to zygote arrest 1 (LOC667127), mRNA Length = 1597 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 ctccgaggatgccgggctcc 565 |||||||||||||||||||| Sbjct: 574 ctccgaggatgccgggctcc 555
>ref|XR_005010.1| PREDICTED: Mus musculus similar to zygote arrest 1 (LOC677094), mRNA Length = 1597 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 ctccgaggatgccgggctcc 565 |||||||||||||||||||| Sbjct: 574 ctccgaggatgccgggctcc 555
>emb|AL035669.43|HS885L7 Human DNA sequence from clone RP5-885L7 on chromosome 20q13.2-13.33 Contains the 3' end of the NTSR1 gene for high affinity neurotensin receptor 1, the C20orf20 gene, the OGFR gene for opioid growth factor receptor, the COL9A3 gene for collagen IX alpha 3, the C20orf143 gene, the TCFL5 gene for basic helix-loop-helix transcription factor-like 5, the ARF4P2 gene for ADP-ribosylation factor 4 pseudogene 2, the 3' end of the DATF1 gene for death associated transcription factor 1, two novel genes and seven CpG islands, complete sequence Length = 160241 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 ctcccctgacgcggccaacc 445 |||||||||||||||||||| Sbjct: 14036 ctcccctgacgcggccaacc 14017
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 cgtcggagaggccggagccg 520 |||||||||||||||||||| Sbjct: 2346614 cgtcggagaggccggagccg 2346595
>dbj|AK149202.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120492M08 product:Hypothetical sodium bile acid symporter containing protein, full insert sequence Length = 3815 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 ctccgaggatgccgggctcc 565 |||||||||||||||||||| Sbjct: 3150 ctccgaggatgccgggctcc 3131
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 cgccgtgaccgcgctgctcaacct 596 ||||||||||||||||| |||||| Sbjct: 2873503 cgccgtgaccgcgctgcgcaacct 2873526
>ref|XM_625286.1| PREDICTED: Apis mellifera hypothetical protein LOC552459 (LOC552459), mRNA Length = 1825 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 ggcggcgctggaggtggcgc 382 |||||||||||||||||||| Sbjct: 136 ggcggcgctggaggtggcgc 155
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 577 gtgaccgcgctgctcaacctctcg 600 ||||| |||||||||||||||||| Sbjct: 23669030 gtgacggcgctgctcaacctctcg 23669053
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 caaggcggcgctggaggtgg 379 |||||||||||||||||||| Sbjct: 7169328 caaggcggcgctggaggtgg 7169309
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cgatgtcgaagacgacgggg 73 |||||||||||||||||||| Sbjct: 2700108 cgatgtcgaagacgacgggg 2700127
>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0068B06 Length = 143712 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 caaggcggcgctggaggtgg 379 |||||||||||||||||||| Sbjct: 46739 caaggcggcgctggaggtgg 46720
>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0052G07 Length = 156207 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 caaggcggcgctggaggtgg 379 |||||||||||||||||||| Sbjct: 4332 caaggcggcgctggaggtgg 4313
>dbj|AP003803.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1060_D03 Length = 102178 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 577 gtgaccgcgctgctcaacctctcg 600 ||||| |||||||||||||||||| Sbjct: 13644 gtgacggcgctgctcaacctctcg 13667
>dbj|AP003747.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1127_E01 Length = 123787 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 577 gtgaccgcgctgctcaacctctcg 600 ||||| |||||||||||||||||| Sbjct: 121471 gtgacggcgctgctcaacctctcg 121494
>dbj|AK059561.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H02, full insert sequence Length = 1983 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 577 gtgaccgcgctgctcaacctctcg 600 ||||| |||||||||||||||||| Sbjct: 835 gtgacggcgctgctcaacctctcg 858
>dbj|AK058404.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-B09, full insert sequence Length = 1709 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 577 gtgaccgcgctgctcaacctctcg 600 ||||| |||||||||||||||||| Sbjct: 838 gtgacggcgctgctcaacctctcg 861
>tpe|BN000605.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx76 gene for class III peroxidase 76 precursor, exon 1 Length = 984 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 caaggcggcgctggaggtgg 379 |||||||||||||||||||| Sbjct: 312 caaggcggcgctggaggtgg 331
>gb|AC108848.12| Mus musculus chromosome 5, clone RP23-300K5, complete sequence Length = 231380 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 ctccgaggatgccgggctcc 565 |||||||||||||||||||| Sbjct: 73619 ctccgaggatgccgggctcc 73600 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,404,516 Number of Sequences: 3902068 Number of extensions: 3404516 Number of successful extensions: 76135 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74281 Number of HSP's gapped (non-prelim): 1854 length of query: 602 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 579 effective length of database: 17,143,297,704 effective search space: 9925969370616 effective search space used: 9925969370616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)