ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd18j23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY106521.1| Zea mays PCO093643 mRNA sequence 58 3e-05
2dbj|AK061920.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
4dbj|AK120436.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
5dbj|AK073415.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
7emb|AL713942.4|CNS07YPB Oryza sativa chromosome 12, . BAC OSJNBa... 56 1e-04
8emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa... 56 1e-04
9gb|AC135864.5| Oryza sativa (japonica cultivar-group) chromosome... 44 0.48
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.48
12gb|AY811985.1| Schistosoma japonicum SJCHGC07934 protein mRNA, p... 42 1.9
13gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence 40 7.6
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.6
15gb|AC102769.11| Mus musculus chromosome 17, clone RP23-89A3, com... 40 7.6
16gb|AY343494.2| Oryza sativa (indica cultivar-group) putative pec... 40 7.6
17gb|AC119733.2| Homo sapiens 3 RP11-159G9 (Roswell Park Cancer In... 40 7.6
18emb|AL356452.12| Human DNA sequence from clone RP11-562L19 on ch... 40 7.6
19gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, co... 40 7.6
20emb|CR388143.6| Zebrafish DNA sequence from clone DKEY-189O20 in... 40 7.6
21gb|AC069220.11| Homo sapiens 3 BAC RP11-115B16 (Roswell Park Can... 40 7.6
22gb|AC008550.5| Homo sapiens chromosome 5 clone CTC-507E12, compl... 40 7.6
23gb|AC156639.2| Mus musculus BAC clone RP23-301M11 from chromosom... 40 7.6
24gb|AC000054.10| Homo sapiens chromosome 3 clone p856 map 3q26, c... 40 7.6
25dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
26dbj|AP006506.1| Mus musculus genomic DNA, chromosome 4, clone: R... 40 7.6
27dbj|AP006505.1| Mus musculus genomic DNA, chromosome 4, clone: R... 40 7.6
28gb|AC010348.4|AC010348 Homo sapiens chromosome 5 clone CTD-2018K... 40 7.6
29dbj|AK100728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
30gb|AF080235.1|AF080235 Streptomyces cyanogenus landomycin biosyn... 40 7.6
31gb|AC148600.2| Xenopus tropicalis clone CH216-62H10, complete se... 40 7.6
32gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.6
33emb|CT010437.15| Mouse DNA sequence from clone RP23-333O22 on ch... 40 7.6
34emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 7.6
35emb|AL611967.21| Mouse DNA sequence from clone RP23-121D17 on ch... 40 7.6

>gb|AY106521.1| Zea mays PCO093643 mRNA sequence
          Length = 506

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 226 caaggccaacgagaacaagcctgtaatgaacgaatga 262
           |||||| ||||||||||||||||| ||||||||||||
Sbjct: 197 caaggctaacgagaacaagcctgtgatgaacgaatga 233



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>dbj|AK061920.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-B08, full
           insert sequence
          Length = 394

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 191 aaaatggaagagcacaagccgaagaactagaggttcaaggccaacgagaacaagcctgta 250
           |||||||||||||| ||||| ||| |  |||||  ||||||||  |||||||||||||| 
Sbjct: 168 aaaatggaagagcaaaagccaaaggagcagaggcccaaggccagtgagaacaagcctgtg 227

                       
Query: 251 atgaacgaatga 262
           ||||| ||||||
Sbjct: 228 atgaatgaatga 239



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                            
Query: 191      aaaatggaagagcacaagccgaagaactagaggttcaaggccaacgagaacaagcctgta 250
                |||||||||||||| ||||| ||| |  |||||  ||||||||  |||||||||||||| 
Sbjct: 12286631 aaaatggaagagcaaaagccaaaggagcagaggcccaaggccagtgagaacaagcctgtg 12286690

                            
Query: 251      atgaacgaatga 262
                ||||| ||||||
Sbjct: 12286691 atgaatgaatga 12286702



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>dbj|AK120436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098D06, full
           insert sequence
          Length = 364

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 191 aaaatggaagagcacaagccgaagaactagaggttcaaggccaacgagaacaagcctgta 250
           |||||||||||||| ||||| ||| |  |||||  ||||||||  |||||||||||||| 
Sbjct: 138 aaaatggaagagcaaaagccaaaggagcagaggcccaaggccagtgagaacaagcctgtg 197

                       
Query: 251 atgaacgaatga 262
           ||||| ||||||
Sbjct: 198 atgaatgaatga 209



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>dbj|AK073415.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043B09, full
            insert sequence
          Length = 1250

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                        
Query: 191  aaaatggaagagcacaagccgaagaactagaggttcaaggccaacgagaacaagcctgta 250
            |||||||||||||| ||||| ||| |  |||||  ||||||||  |||||||||||||| 
Sbjct: 1010 aaaatggaagagcaaaagccaaaggagcagaggcccaaggccagtgagaacaagcctgtg 1069

                        
Query: 251  atgaacgaatga 262
            ||||| ||||||
Sbjct: 1070 atgaatgaatga 1081



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                            
Query: 191      aaaatggaagagcacaagccgaagaactagaggttcaaggccaacgagaacaagcctgta 250
                |||||||||||||| ||||| ||| |  |||||  ||||||||  |||||||||||||| 
Sbjct: 12241001 aaaatggaagagcaaaagccaaaggagcagaggcccaaggccagtgagaacaagcctgtg 12241060

                            
Query: 251      atgaacgaatga 262
                ||||| ||||||
Sbjct: 12241061 atgaatgaatga 12241072



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>emb|AL713942.4|CNS07YPB Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 163702

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                        
Query: 191  aaaatggaagagcacaagccgaagaactagaggttcaaggccaacgagaacaagcctgta 250
            |||||||||||||| ||||| ||| |  |||||  ||||||||  |||||||||||||| 
Sbjct: 996  aaaatggaagagcaaaagccaaaggagcagaggcccaaggccagtgagaacaagcctgtg 1055

                        
Query: 251  atgaacgaatga 262
            ||||| ||||||
Sbjct: 1056 atgaatgaatga 1067



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>emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa0017L03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 159296

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                         
Query: 191   aaaatggaagagcacaagccgaagaactagaggttcaaggccaacgagaacaagcctgta 250
             |||||||||||||| ||||| ||| |  |||||  ||||||||  |||||||||||||| 
Sbjct: 10686 aaaatggaagagcaaaagccaaaggagcagaggcccaaggccagtgagaacaagcctgtg 10627

                         
Query: 251   atgaacgaatga 262
             ||||| ||||||
Sbjct: 10626 atgaatgaatga 10615



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>gb|AC135864.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0071K13, complete sequence
          Length = 176150

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 226   caaggccaacgagaacaagcctgtaatgaacgaatgaccatc 267
             |||||||| ||||||||||||||| ||||  |||||| ||||
Sbjct: 73055 caaggccagcgagaacaagcctgtgatgacagaatgagcatc 73014



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                          
Query: 226      caaggccaacgagaacaagcctgtaatgaacgaatgaccatc 267
                |||||||| ||||||||||||||| ||||  |||||| ||||
Sbjct: 14963268 caaggccagcgagaacaagcctgtgatgacagaatgagcatc 14963227



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                          
Query: 226      caaggccaacgagaacaagcctgtaatgaacgaatgaccatc 267
                |||||||| ||||||||||||||| ||||  |||||| ||||
Sbjct: 15044963 caaggccagcgagaacaagcctgtgatgacagaatgagcatc 15044922



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>gb|AY811985.1| Schistosoma japonicum SJCHGC07934 protein mRNA, partial cds
          Length = 686

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 423 tgataaatcagtagattttat 443
           |||||||||||||||||||||
Sbjct: 241 tgataaatcagtagattttat 221



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>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence
          Length = 142376

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 262    accatcctccggacagtccgatgc 285
              ||||||| ||||||||||||||||
Sbjct: 116229 accatccaccggacagtccgatgc 116206



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 114      gccgccgccgaagatgaagt 133
                ||||||||||||||||||||
Sbjct: 11007631 gccgccgccgaagatgaagt 11007650



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>gb|AC102769.11| Mus musculus chromosome 17, clone RP23-89A3, complete sequence
          Length = 162417

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 472   tggttttggaatccacttct 491
             ||||||||||||||||||||
Sbjct: 34283 tggttttggaatccacttct 34302



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>gb|AY343494.2| Oryza sativa (indica cultivar-group) putative pectinesterase mRNA,
           complete cds
          Length = 1302

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 gccgccgccgaagatgaagt 133
           ||||||||||||||||||||
Sbjct: 667 gccgccgccgaagatgaagt 648



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>gb|AC119733.2| Homo sapiens 3 RP11-159G9 (Roswell Park Cancer Institute Human BAC
            Library) complete sequence
          Length = 154803

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 187  aagaaaaatggaagagcaca 206
            ||||||||||||||||||||
Sbjct: 6772 aagaaaaatggaagagcaca 6791



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>emb|AL356452.12| Human DNA sequence from clone RP11-562L19 on chromosome 13, complete
             sequence
          Length = 81586

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 425   ataaatcagtagattttatc 444
             ||||||||||||||||||||
Sbjct: 28461 ataaatcagtagattttatc 28442



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>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence
          Length = 167588

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    gccgccgccgaagatgaagt 133
              ||||||||||||||||||||
Sbjct: 125491 gccgccgccgaagatgaagt 125472



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>emb|CR388143.6| Zebrafish DNA sequence from clone DKEY-189O20 in linkage group 21,
             complete sequence
          Length = 243457

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    caaactatgtggagatcaaa 44
             ||||||||||||||||||||
Sbjct: 62681 caaactatgtggagatcaaa 62662



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>gb|AC069220.11| Homo sapiens 3 BAC RP11-115B16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157448

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 529   actatttctcacgtttcttctttt 552
             |||||||||||| |||||||||||
Sbjct: 49655 actatttctcacttttcttctttt 49632



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>gb|AC008550.5| Homo sapiens chromosome 5 clone CTC-507E12, complete sequence
          Length = 125406

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 534    ttctcacgtttcttcttttatgaa 557
              ||||||| ||||||||||||||||
Sbjct: 118529 ttctcacatttcttcttttatgaa 118506



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>gb|AC156639.2| Mus musculus BAC clone RP23-301M11 from chromosome 9, complete sequence
          Length = 188292

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    aaaatggatggtgtgaacat 343
              ||||||||||||||||||||
Sbjct: 114375 aaaatggatggtgtgaacat 114356



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>gb|AC000054.10| Homo sapiens chromosome 3 clone p856 map 3q26, complete sequence
          Length = 64211

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 529   actatttctcacgtttcttctttt 552
             |||||||||||| |||||||||||
Sbjct: 37618 actatttctcacttttcttctttt 37641



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 114      gccgccgccgaagatgaagt 133
                ||||||||||||||||||||
Sbjct: 11004394 gccgccgccgaagatgaagt 11004413



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>dbj|AP006506.1| Mus musculus genomic DNA, chromosome 4, clone: RP23-284M8, complete
             sequence
          Length = 255195

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 223   gttcaaggccaacgagaacaagcc 246
             |||||||||||| |||||||||||
Sbjct: 13180 gttcaaggccaaggagaacaagcc 13203



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>dbj|AP006505.1| Mus musculus genomic DNA, chromosome 4, clone: RP23-266A3, complete
              sequence
          Length = 199759

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 223    gttcaaggccaacgagaacaagcc 246
              |||||||||||| |||||||||||
Sbjct: 131752 gttcaaggccaaggagaacaagcc 131775



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>gb|AC010348.4|AC010348 Homo sapiens chromosome 5 clone CTD-2018K14, complete sequence
          Length = 162868

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 534   ttctcacgtttcttcttttatgaa 557
             ||||||| ||||||||||||||||
Sbjct: 77385 ttctcacatttcttcttttatgaa 77362



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>dbj|AK100728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023117F04, full
           insert sequence
          Length = 1436

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 gccgccgccgaagatgaagt 133
           ||||||||||||||||||||
Sbjct: 683 gccgccgccgaagatgaagt 664



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>gb|AF080235.1|AF080235 Streptomyces cyanogenus landomycin biosynthetic gene cluster, complete
             sequence
          Length = 34644

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 221   aggttcaaggccaacgagaacaag 244
             |||||||||||||||||| |||||
Sbjct: 12707 aggttcaaggccaacgagtacaag 12730



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>gb|AC148600.2| Xenopus tropicalis clone CH216-62H10, complete sequence
          Length = 162075

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   tagctgccaatcatgtgact 315
             ||||||||||||||||||||
Sbjct: 51600 tagctgccaatcatgtgact 51581



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>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042B10, from chromosome 3, complete sequence
          Length = 144205

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   gccgccgccgaagatgaagt 133
             ||||||||||||||||||||
Sbjct: 51116 gccgccgccgaagatgaagt 51135



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>emb|CT010437.15| Mouse DNA sequence from clone RP23-333O22 on chromosome 17, complete
             sequence
          Length = 172696

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 472   tggttttggaatccacttct 491
             ||||||||||||||||||||
Sbjct: 49764 tggttttggaatccacttct 49745



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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 410     tgcatgcctggaatgataaatcagtaga 437
               ||||||||||| || |||||||||||||
Sbjct: 2143760 tgcatgcctgggatcataaatcagtaga 2143787



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>emb|AL611967.21| Mouse DNA sequence from clone RP23-121D17 on chromosome 4, complete
              sequence
          Length = 173824

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 223    gttcaaggccaacgagaacaagcc 246
              |||||||||||| |||||||||||
Sbjct: 154810 gttcaaggccaaggagaacaagcc 154787


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,719,063
Number of Sequences: 3902068
Number of extensions: 4719063
Number of successful extensions: 82444
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82189
Number of HSP's gapped (non-prelim): 255
length of query: 557
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 534
effective length of database: 17,143,297,704
effective search space: 9154520973936
effective search space used: 9154520973936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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