| Clone Name | basd18j23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106521.1| Zea mays PCO093643 mRNA sequence Length = 506 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 226 caaggccaacgagaacaagcctgtaatgaacgaatga 262 |||||| ||||||||||||||||| |||||||||||| Sbjct: 197 caaggctaacgagaacaagcctgtgatgaacgaatga 233
>dbj|AK061920.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-B08, full insert sequence Length = 394 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 191 aaaatggaagagcacaagccgaagaactagaggttcaaggccaacgagaacaagcctgta 250 |||||||||||||| ||||| ||| | ||||| |||||||| |||||||||||||| Sbjct: 168 aaaatggaagagcaaaagccaaaggagcagaggcccaaggccagtgagaacaagcctgtg 227 Query: 251 atgaacgaatga 262 ||||| |||||| Sbjct: 228 atgaatgaatga 239
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 191 aaaatggaagagcacaagccgaagaactagaggttcaaggccaacgagaacaagcctgta 250 |||||||||||||| ||||| ||| | ||||| |||||||| |||||||||||||| Sbjct: 12286631 aaaatggaagagcaaaagccaaaggagcagaggcccaaggccagtgagaacaagcctgtg 12286690 Query: 251 atgaacgaatga 262 ||||| |||||| Sbjct: 12286691 atgaatgaatga 12286702
>dbj|AK120436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098D06, full insert sequence Length = 364 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 191 aaaatggaagagcacaagccgaagaactagaggttcaaggccaacgagaacaagcctgta 250 |||||||||||||| ||||| ||| | ||||| |||||||| |||||||||||||| Sbjct: 138 aaaatggaagagcaaaagccaaaggagcagaggcccaaggccagtgagaacaagcctgtg 197 Query: 251 atgaacgaatga 262 ||||| |||||| Sbjct: 198 atgaatgaatga 209
>dbj|AK073415.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043B09, full insert sequence Length = 1250 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 191 aaaatggaagagcacaagccgaagaactagaggttcaaggccaacgagaacaagcctgta 250 |||||||||||||| ||||| ||| | ||||| |||||||| |||||||||||||| Sbjct: 1010 aaaatggaagagcaaaagccaaaggagcagaggcccaaggccagtgagaacaagcctgtg 1069 Query: 251 atgaacgaatga 262 ||||| |||||| Sbjct: 1070 atgaatgaatga 1081
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 191 aaaatggaagagcacaagccgaagaactagaggttcaaggccaacgagaacaagcctgta 250 |||||||||||||| ||||| ||| | ||||| |||||||| |||||||||||||| Sbjct: 12241001 aaaatggaagagcaaaagccaaaggagcagaggcccaaggccagtgagaacaagcctgtg 12241060 Query: 251 atgaacgaatga 262 ||||| |||||| Sbjct: 12241061 atgaatgaatga 12241072
>emb|AL713942.4|CNS07YPB Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 163702 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 191 aaaatggaagagcacaagccgaagaactagaggttcaaggccaacgagaacaagcctgta 250 |||||||||||||| ||||| ||| | ||||| |||||||| |||||||||||||| Sbjct: 996 aaaatggaagagcaaaagccaaaggagcagaggcccaaggccagtgagaacaagcctgtg 1055 Query: 251 atgaacgaatga 262 ||||| |||||| Sbjct: 1056 atgaatgaatga 1067
>emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa0017L03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159296 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 191 aaaatggaagagcacaagccgaagaactagaggttcaaggccaacgagaacaagcctgta 250 |||||||||||||| ||||| ||| | ||||| |||||||| |||||||||||||| Sbjct: 10686 aaaatggaagagcaaaagccaaaggagcagaggcccaaggccagtgagaacaagcctgtg 10627 Query: 251 atgaacgaatga 262 ||||| |||||| Sbjct: 10626 atgaatgaatga 10615
>gb|AC135864.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0071K13, complete sequence Length = 176150 Score = 44.1 bits (22), Expect = 0.48 Identities = 37/42 (88%) Strand = Plus / Minus Query: 226 caaggccaacgagaacaagcctgtaatgaacgaatgaccatc 267 |||||||| ||||||||||||||| |||| |||||| |||| Sbjct: 73055 caaggccagcgagaacaagcctgtgatgacagaatgagcatc 73014
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.48 Identities = 37/42 (88%) Strand = Plus / Minus Query: 226 caaggccaacgagaacaagcctgtaatgaacgaatgaccatc 267 |||||||| ||||||||||||||| |||| |||||| |||| Sbjct: 14963268 caaggccagcgagaacaagcctgtgatgacagaatgagcatc 14963227
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.48 Identities = 37/42 (88%) Strand = Plus / Minus Query: 226 caaggccaacgagaacaagcctgtaatgaacgaatgaccatc 267 |||||||| ||||||||||||||| |||| |||||| |||| Sbjct: 15044963 caaggccagcgagaacaagcctgtgatgacagaatgagcatc 15044922
>gb|AY811985.1| Schistosoma japonicum SJCHGC07934 protein mRNA, partial cds Length = 686 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 tgataaatcagtagattttat 443 ||||||||||||||||||||| Sbjct: 241 tgataaatcagtagattttat 221
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence Length = 142376 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 262 accatcctccggacagtccgatgc 285 ||||||| |||||||||||||||| Sbjct: 116229 accatccaccggacagtccgatgc 116206
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 gccgccgccgaagatgaagt 133 |||||||||||||||||||| Sbjct: 11007631 gccgccgccgaagatgaagt 11007650
>gb|AC102769.11| Mus musculus chromosome 17, clone RP23-89A3, complete sequence Length = 162417 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 tggttttggaatccacttct 491 |||||||||||||||||||| Sbjct: 34283 tggttttggaatccacttct 34302
>gb|AY343494.2| Oryza sativa (indica cultivar-group) putative pectinesterase mRNA, complete cds Length = 1302 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 gccgccgccgaagatgaagt 133 |||||||||||||||||||| Sbjct: 667 gccgccgccgaagatgaagt 648
>gb|AC119733.2| Homo sapiens 3 RP11-159G9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154803 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 aagaaaaatggaagagcaca 206 |||||||||||||||||||| Sbjct: 6772 aagaaaaatggaagagcaca 6791
>emb|AL356452.12| Human DNA sequence from clone RP11-562L19 on chromosome 13, complete sequence Length = 81586 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 ataaatcagtagattttatc 444 |||||||||||||||||||| Sbjct: 28461 ataaatcagtagattttatc 28442
>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence Length = 167588 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 gccgccgccgaagatgaagt 133 |||||||||||||||||||| Sbjct: 125491 gccgccgccgaagatgaagt 125472
>emb|CR388143.6| Zebrafish DNA sequence from clone DKEY-189O20 in linkage group 21, complete sequence Length = 243457 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 caaactatgtggagatcaaa 44 |||||||||||||||||||| Sbjct: 62681 caaactatgtggagatcaaa 62662
>gb|AC069220.11| Homo sapiens 3 BAC RP11-115B16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 157448 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 529 actatttctcacgtttcttctttt 552 |||||||||||| ||||||||||| Sbjct: 49655 actatttctcacttttcttctttt 49632
>gb|AC008550.5| Homo sapiens chromosome 5 clone CTC-507E12, complete sequence Length = 125406 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 534 ttctcacgtttcttcttttatgaa 557 ||||||| |||||||||||||||| Sbjct: 118529 ttctcacatttcttcttttatgaa 118506
>gb|AC156639.2| Mus musculus BAC clone RP23-301M11 from chromosome 9, complete sequence Length = 188292 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 aaaatggatggtgtgaacat 343 |||||||||||||||||||| Sbjct: 114375 aaaatggatggtgtgaacat 114356
>gb|AC000054.10| Homo sapiens chromosome 3 clone p856 map 3q26, complete sequence Length = 64211 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 529 actatttctcacgtttcttctttt 552 |||||||||||| ||||||||||| Sbjct: 37618 actatttctcacttttcttctttt 37641
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 gccgccgccgaagatgaagt 133 |||||||||||||||||||| Sbjct: 11004394 gccgccgccgaagatgaagt 11004413
>dbj|AP006506.1| Mus musculus genomic DNA, chromosome 4, clone: RP23-284M8, complete sequence Length = 255195 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 gttcaaggccaacgagaacaagcc 246 |||||||||||| ||||||||||| Sbjct: 13180 gttcaaggccaaggagaacaagcc 13203
>dbj|AP006505.1| Mus musculus genomic DNA, chromosome 4, clone: RP23-266A3, complete sequence Length = 199759 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 gttcaaggccaacgagaacaagcc 246 |||||||||||| ||||||||||| Sbjct: 131752 gttcaaggccaaggagaacaagcc 131775
>gb|AC010348.4|AC010348 Homo sapiens chromosome 5 clone CTD-2018K14, complete sequence Length = 162868 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 534 ttctcacgtttcttcttttatgaa 557 ||||||| |||||||||||||||| Sbjct: 77385 ttctcacatttcttcttttatgaa 77362
>dbj|AK100728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023117F04, full insert sequence Length = 1436 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 gccgccgccgaagatgaagt 133 |||||||||||||||||||| Sbjct: 683 gccgccgccgaagatgaagt 664
>gb|AF080235.1|AF080235 Streptomyces cyanogenus landomycin biosynthetic gene cluster, complete sequence Length = 34644 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 aggttcaaggccaacgagaacaag 244 |||||||||||||||||| ||||| Sbjct: 12707 aggttcaaggccaacgagtacaag 12730
>gb|AC148600.2| Xenopus tropicalis clone CH216-62H10, complete sequence Length = 162075 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tagctgccaatcatgtgact 315 |||||||||||||||||||| Sbjct: 51600 tagctgccaatcatgtgact 51581
>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042B10, from chromosome 3, complete sequence Length = 144205 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 gccgccgccgaagatgaagt 133 |||||||||||||||||||| Sbjct: 51116 gccgccgccgaagatgaagt 51135
>emb|CT010437.15| Mouse DNA sequence from clone RP23-333O22 on chromosome 17, complete sequence Length = 172696 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 tggttttggaatccacttct 491 |||||||||||||||||||| Sbjct: 49764 tggttttggaatccacttct 49745
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 410 tgcatgcctggaatgataaatcagtaga 437 ||||||||||| || ||||||||||||| Sbjct: 2143760 tgcatgcctgggatcataaatcagtaga 2143787
>emb|AL611967.21| Mouse DNA sequence from clone RP23-121D17 on chromosome 4, complete sequence Length = 173824 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 gttcaaggccaacgagaacaagcc 246 |||||||||||| ||||||||||| Sbjct: 154810 gttcaaggccaaggagaacaagcc 154787 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,719,063 Number of Sequences: 3902068 Number of extensions: 4719063 Number of successful extensions: 82444 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82189 Number of HSP's gapped (non-prelim): 255 length of query: 557 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 534 effective length of database: 17,143,297,704 effective search space: 9154520973936 effective search space used: 9154520973936 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)