ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd18j03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NUDC_CHICK (Q5ZIN1) Nuclear migration protein nudC (Nuclear dist... 30 3.0
2YP01_HUMAN (Q7Z4Q2) Protein FLJ20718 30 5.1

>NUDC_CHICK (Q5ZIN1) Nuclear migration protein nudC (Nuclear distribution|
           protein C homolog)
          Length = 341

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +1

Query: 301 DYEFTDTTGEVELRLDIGKLGIESSRDVFVDVDDTSLLIRAKSDGTLRTLMNVGTLFDRV 480
           +Y +T T  E++L +          +DV VD+    L +  K    +      G LF+ V
Sbjct: 181 NYRWTQTLSELDLAIPFKVTFRLKGKDVVVDIQRRRLRVGLKGHPPVID----GELFNEV 236

Query: 481 KSSETIWFIDE 513
           K  E+ W I++
Sbjct: 237 KVEESSWLIED 247



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>YP01_HUMAN (Q7Z4Q2) Protein FLJ20718|
          Length = 680

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +1

Query: 355 KLGIESSRDVFVDVDDTSLL-----IRAKSDGTLRTLMNVGTLFDRVKSSE 492
           K GI SS +V V V+  S+L     + AK DGTL TL N+G     V + +
Sbjct: 545 KAGIHSS-NVGVRVNVVSILGITGSVLAKEDGTLETLKNIGCFLLEVTTKD 594


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,975,487
Number of Sequences: 219361
Number of extensions: 702137
Number of successful extensions: 1560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1560
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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