>R1AB_CVPPU (Q9IW06) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown
            protein 1; 3C-like
          Length = 6684

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 12/54 (22%), Positives = 22/54 (40%)
 Frame = +1

Query: 262  CYSFFCYFSLFGSCCLLISSSMLVITANSTCYMVESREIYTVGI*CKHYLVCCK 423
            CY    +  +FG C  LI   ++ +  N+  Y V     + +     +Y +  K
Sbjct: 2682 CYGVLKFKKIFGDCTFLIVMIIVTLVVNNVSYFVTQNTFFMIIYAIVYYFITRK 2735

>TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subunit 5|
           (Transcription initiation factor TFIID 100 kDa subunit)
           (TAF(II)100) (TAFII-100) (TAFII100)
          Length = 801

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 3   PEEEEDAGLESCAHLLHALHPSVPGAPLPDP 95
           P E + AG E+ + LL  +  SVPG+  P+P
Sbjct: 134 PGELDGAGAEAASALLSRVTASVPGSAAPEP 164

>MMRN2_HUMAN (Q9H8L6) Multimerin-2 precursor (EMILIN-3) (Elastin microfibril|
           interface located protein 3) (Elastin microfibril
           interfacer 3) (EndoGlyx-1 p125/p140 subunit)
          Length = 949

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 128 NFPHSIVRDLPGIWKRSPGDRRMKSMKEMSTG 33
           N  H +   LPG+WK  PG+     M+   TG
Sbjct: 186 NDVHRVADSLPGLWKALPGNLTAAVMEANQTG 217


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,114,008
Number of Sequences: 219361
Number of extensions: 663140
Number of successful extensions: 2611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2605
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)