Clone Information

BLAST Search Result

Clone Name	basd18i07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR pro...	86	9e-17
2	Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915	70	3e-12
3	PTCD1_MOUSE (Q8C2E4) Pentatricopeptide repeat protein 1	44	2e-04
4	YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I	42	0.001
5	Y728_ENTFA (Q837V0) Hypothetical RNA methyltransferase EF0728 (E...	37	0.027
6	Y768_OCEIH (Q8ES75) Hypothetical RNA methyltransferase OB0768 (E...	35	0.13
7	GLMM_BURPS (Q63V83) Phosphoglucosamine mutase (EC 5.4.2.10)	33	0.39
8	GLMM_BURMA (Q62L77) Phosphoglucosamine mutase (EC 5.4.2.10)	33	0.39
9	YG3M_YEAST (P48237) Hypothetical 101.4 kDa protein in RPL24B-RSR...	33	0.67
10	RPOM_HUMAN (O00411) DNA-directed RNA polymerase, mitochondrial p...	32	0.87
11	SNAG_ARATH (Q9SPE5) Gamma-soluble NSF attachment protein (Gamma-...	32	1.5
12	TPBG_MACFA (Q4R8Y9) Trophoblast glycoprotein precursor	31	1.9
13	ISPG2_STRAW (Q82ML3) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate...	31	2.5
14	YEHI_ECOLI (P33346) Hypothetical protein yehI	31	2.5
15	DNAA_STRCH (Q9ZH75) Chromosomal replication initiator protein dnaA	31	2.5
16	CCG8_NEUCR (Q01306) Clock-controlled protein 8	30	3.3
17	5HT2A_DROME (P28285) 5-hydroxytryptamine receptor 2A (5-HT recep...	30	3.3
18	PO2F1_HUMAN (P14859) POU domain, class 2, transcription factor 1...	30	3.3
19	FIG2_YEAST (P25653) Factor-induced gene 2 precursor (Cell wall a...	30	3.3
20	YSY1_CAEEL (Q20255) Hypothetical protein ZK328.7 in chromosome III	30	4.3
21	YR597_MIMIV (Q5UP66) Putative ankyrin repeat protein R597	30	4.3
22	UPPS_STAAW (Q8NWZ5) Undecaprenyl pyrophosphate synthetase (EC 2....	30	4.3
23	UPPS_STAAS (Q6G9V3) Undecaprenyl pyrophosphate synthetase (EC 2....	30	4.3
24	UPPS_STAAR (Q6GHH5) Undecaprenyl pyrophosphate synthetase (EC 2....	30	4.3
25	UPPS_STAAN (P60477) Undecaprenyl pyrophosphate synthetase (EC 2....	30	4.3
26	UPPS_STAAM (P60476) Undecaprenyl pyrophosphate synthetase (EC 2....	30	4.3
27	UPPS_STAAC (Q5HGH1) Undecaprenyl pyrophosphate synthetase (EC 2....	30	4.3
28	ISPG1_STRAW (Q82K43) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate...	30	5.6
29	PO2F1_PIG (Q29076) POU domain, class 2, transcription factor 1 (...	30	5.6
30	LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP1...	30	5.6
31	GYRB_VIBPA (O51859) DNA gyrase subunit B (EC 5.99.1.3)	30	5.6
32	WIF1_HUMAN (Q9Y5W5) Wnt inhibitory factor 1 precursor (WIF-1)	30	5.6
33	TRUA_BACSV (Q45557) tRNA pseudouridine synthase A (EC 5.4.99.12)...	29	7.4
34	Y1988_STAAR (Q6GFG0) Hypothetical RNA methyltransferase SAR1988 ...	29	7.4
35	Y1838_STAAW (Q8NVT4) Hypothetical RNA methyltransferase MW1838 (...	29	7.4
36	Y1819_STAAS (Q6G836) Hypothetical RNA methyltransferase SAS1819 ...	29	7.4
37	GLMM_RALSO (Q8XZ76) Phosphoglucosamine mutase (EC 5.4.2.10)	29	7.4
38	AEP3_KLULA (Q6CIF3) ATPase expression protein 3	29	7.4
39	Y1897_STAAM (Q99SY9) Hypothetical RNA methyltransferase SAV1897 ...	29	9.6
40	Y1713_STAAN (Q7A4Q9) Hypothetical RNA methyltransferase SA1713 (...	29	9.6
41	MUC1_YEAST (P08640) Mucin-like protein 1 precursor	29	9.6
42	SSP2_BOMMO (P20613) Sex-specific storage-protein 2 precursor (SP...	29	9.6
43	MYCPP_HUMAN (Q7Z401) C-myc promoter-binding protein	29	9.6
44	CYP7_YEAST (P47103) Peptidyl-prolyl cis-trans isomerase CYP7 (EC...	29	9.6

>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)|
            (Fertility restorer) (Restorer for CMS)
          Length = 791

 Score = 85.5 bits (210), Expect = 9e-17
 Identities = 45/168 (26%), Positives = 88/168 (52%)
 Frame = +3

Query: 15   VSYNMVLDALGRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDAI 194
            ++YN +++     G++D+A++L   M      P  +     +++ +++ YC + R +DA+
Sbjct: 512  ITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTV-----TYSTLINGYCKISRMEDAL 566

Query: 195  EVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPDEYTYVLLIESC 374
             +F +M     +PD ++YN ++  L + +    A+ELY  + E G   +  TY +++   
Sbjct: 567  VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 626

Query: 375  FRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDRIDEAQGFF 518
             +    DDA+  F  +  + L+  A  FN +I  L+KV R DEA+  F
Sbjct: 627  CKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLF 674



 Score = 82.4 bits (202), Expect = 7e-16
 Identities = 50/172 (29%), Positives = 92/172 (53%)
 Frame = +3

Query: 12  AVSYNMVLDALGRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDA 191
           AV+Y  V+  L ++GR++DA+  F++M  E   P  I      +N ++   C   +++ A
Sbjct: 406 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIV-----YNSLIHGLCTCNKWERA 460

Query: 192 IEVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPDEYTYVLLIES 371
            E+  +M ++    + + +NS+I+   K   V E+E+L++ M   G+ P+  TY  LI  
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLING 520

Query: 372 CFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDRIDEAQGFFDLM 527
                 +D+A+   S M  VGL+PN   ++ +I+G  K+ R+++A   F  M
Sbjct: 521 YCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEM 572



 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 35/209 (16%)
 Frame = +3

Query: 15  VSYNMVLDALGRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDAI 194
           V+YN ++ AL +   +D A+E+ + M K    P     +  ++N ++  YC   + ++AI
Sbjct: 232 VTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP-----DCMTYNSILHGYCSSGQPKEAI 286

Query: 195 EVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERG--------------- 329
               KM      PD ++Y+ L+++L KN    EA +++  M +RG               
Sbjct: 287 GFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGY 346

Query: 330 --------------------INPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNA 449
                               I+PD Y + +LI +  +   VD A+  FSKM   GL PNA
Sbjct: 347 ATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNA 406

Query: 450 NAFNKVISGLVKVDRIDEAQGFFDLMTEK 536
             +  VI  L K  R+++A  +F+ M ++
Sbjct: 407 VTYGAVIGILCKSGRVEDAMLYFEQMIDE 435



 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 40/168 (23%), Positives = 88/168 (52%)
 Frame = +3

Query: 15  VSYNMVLDALGRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDAI 194
           + +N ++D+  + GR+ ++ +LF+ M +    P     N+ ++N +++ YC   +  +A+
Sbjct: 477 IFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP-----NVITYNTLINGYCLAGKMDEAM 531

Query: 195 EVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPDEYTYVLLIESC 374
           ++   M      P+ ++Y++LIN   K   + +A  L+KEM   G++PD  TY ++++  
Sbjct: 532 KLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGL 591

Query: 375 FRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDRIDEAQGFF 518
           F+      A   + ++ + G +   + +N ++ GL K    D+A   F
Sbjct: 592 FQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMF 639



 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 45/171 (26%), Positives = 75/171 (43%)
 Frame = +3

Query: 15  VSYNMVLDALGRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDAI 194
           VSY  V++   + G  D A   +  M       R I  ++ ++N ++ A C  +    A+
Sbjct: 197 VSYTTVINGFFKEGDSDKAYSTYHEMLD-----RGILPDVVTYNSIIAALCKAQAMDKAM 251

Query: 195 EVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPDEYTYVLLIESC 374
           EV   M +    PD ++YNS+++    +    EA    K+M   G+ PD  TY LL++  
Sbjct: 252 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYL 311

Query: 375 FRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDRIDEAQGFFDLM 527
            +     +A   F  M   GL+P    +  ++ G      + E  G  DLM
Sbjct: 312 CKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 362



 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 3/176 (1%)
 Frame = +3

Query: 18  SYNMVLDALGRNGRLDDAVELFDRMCKEH---DPPRRIAVNLGSFNVMVDAYCGVERFQD 188
           SYN++L  L    R  +A+EL   M  +     PP     ++ S+  +++ +        
Sbjct: 160 SYNILLKGLCDENRSQEALELLHMMADDRGGGSPP-----DVVSYTTVINGFFKEGDSDK 214

Query: 189 AIEVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPDEYTYVLLIE 368
           A   + +M ++   PD ++YNS+I  L K + + +A E+   M + G+ PD  TY  ++ 
Sbjct: 215 AYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 274

Query: 369 SCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDRIDEAQGFFDLMTEK 536
                    +A+G+  KM   G+ P+   ++ ++  L K  R  EA+  FD MT++
Sbjct: 275 GYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKR 330



 Score = 68.9 bits (167), Expect = 8e-12
 Identities = 43/162 (26%), Positives = 85/162 (52%)
 Frame = +3

Query: 21  YNMVLDALGRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDAIEV 200
           +++++ A  + G++D A+ +F +M ++   P  +     ++  ++   C   R +DA+  
Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAV-----TYGAVIGILCKSGRVEDAMLY 428

Query: 201 FGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPDEYTYVLLIESCFR 380
           F +M ++  +P  + YNSLI+ L        AEEL  EM +RGI  +   +  +I+S  +
Sbjct: 429 FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK 488

Query: 381 VDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDRIDEA 506
              V ++   F  M  +G++PN   +N +I+G     ++DEA
Sbjct: 489 EGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEA 530



 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 30/201 (14%)
 Frame = +3

Query: 15  VSYNMVLDALGRNGRLDDAVELFDRMCKEHDPPR------------------------RI 122
           V+Y++++D L +NGR  +A ++FD M K    P                          +
Sbjct: 302 VTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 361

Query: 123 AVNLGS------FNVMVDAYCGVERFQDAIEVFGKMGEKSCTPDALSYNSLINWLGKNKL 284
            V  G       F++++ AY    +   A+ VF KM ++   P+A++Y ++I  L K+  
Sbjct: 362 MVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 421

Query: 285 VGEAEELYKEMGERGINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNK 464
           V +A   +++M + G++P    Y  LI      +  + A     +M D G+  N   FN 
Sbjct: 422 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 481

Query: 465 VISGLVKVDRIDEAQGFFDLM 527
           +I    K  R+ E++  F+LM
Sbjct: 482 IIDSHCKEGRVIESEKLFELM 502



 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 4/176 (2%)
 Frame = +3

Query: 18  SYNMVLDALGRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDAIE 197
           +Y +++    R GRLD        + K     +   V+  +F  ++   C  +R  DA++
Sbjct: 89  TYGILIGCCCRAGRLDLGFAALGNVIK-----KGFRVDAIAFTPLLKGLCADKRTSDAMD 143

Query: 198 -VFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGE---RGINPDEYTYVLLI 365
            V  +M E  C P+  SYN L+  L       EA EL   M +    G  PD  +Y  +I
Sbjct: 144 IVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVI 203

Query: 366 ESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDRIDEAQGFFDLMTE 533
              F+  + D A   + +M D G+ P+   +N +I+ L K   +D+A    + M +
Sbjct: 204 NGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVK 259



 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 39/174 (22%), Positives = 83/174 (47%)
 Frame = +3

Query: 15   VSYNMVLDALGRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDAI 194
            ++YN++L  L +  R   A EL+ R+ +         + L ++N+++   C  +   DA+
Sbjct: 582  ITYNIILQGLFQTRRTAAAKELYVRITESGTQ-----IELSTYNIILHGLCKNKLTDDAL 636

Query: 195  EVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPDEYTYVLLIESC 374
            ++F  +       +A ++N +I+ L K     EA++L+      G+ P+ +TY L+ E+ 
Sbjct: 637  QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 696

Query: 375  FRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDRIDEAQGFFDLMTEK 536
                 +++    F  M D G   ++   N ++  L++   I  A  +  ++ EK
Sbjct: 697  IGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEK 750



 Score = 35.0 bits (79), Expect = 0.13
 Identities = 27/119 (22%), Positives = 54/119 (45%)
 Frame = +3

Query: 12  AVSYNMVLDALGRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDA 191
           A ++N+++DAL + GR D+A +LF         P     N  ++ +M +   G    ++ 
Sbjct: 651 ARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVP-----NYWTYRLMAENIIGQGLLEEL 705

Query: 192 IEVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPDEYTYVLLIE 368
            ++F  M +  CT D+   N ++  L +   +  A      + E+  + +  T  L I+
Sbjct: 706 DQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 764



 Score = 33.9 bits (76), Expect = 0.30
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = +3

Query: 306 YKEMGERG---INPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISG 476
           Y  M   G   + PD  TY +LI  C R   +D        +   G R +A AF  ++ G
Sbjct: 72  YNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 131

Query: 477 LVKVDRIDEA 506
           L    R  +A
Sbjct: 132 LCADKRTSDA 141

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>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915|
          Length = 463

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 41/171 (23%), Positives = 84/171 (49%), Gaps = 3/171 (1%)
 Frame = +3

Query: 9   GAVSYNMVLDALGRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQD 188
           G  +YN++LDAL + G +D+A+ELF  M     P       L ++N++++  C   R   
Sbjct: 153 GPDTYNVLLDALCKCGYIDNALELFKEMQSRFKP------ELMTYNILINGLCKSRRVGT 206

Query: 189 AIEVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPDEYTYVLLIE 368
           A  +  ++ +   TP+A++Y +++    K + +    +L+ EM   G   D Y Y  ++ 
Sbjct: 207 AKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVS 266

Query: 369 SCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVK---VDRIDEAQG 512
           +  +     +A  Y  ++   G R +  ++N +++   K   +D +D+  G
Sbjct: 267 ALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLG 317



 Score = 69.7 bits (169), Expect = 5e-12
 Identities = 45/176 (25%), Positives = 83/176 (47%)
 Frame = +3

Query: 12  AVSYNMVLDALGRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDA 191
           AV+Y  +L    +  R+   ++LF  M +E         +  ++  +V A     R ++A
Sbjct: 223 AVTYTTILKLYFKTRRIRRGLQLFLEMKREG-----YTYDGYAYFAVVSALIKTGRTKEA 277

Query: 192 IEVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPDEYTYVLLIES 371
            E   ++  K    D +SYN+L+N   K+  +   ++L  E+  RG+  DEYT+ +++  
Sbjct: 278 YEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNG 337

Query: 372 CFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDRIDEAQGFFDLMTEKE 539
             R      A  +F  M ++G+  N    N ++ GL K   +D A  +F+ M  K+
Sbjct: 338 LLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFESMEVKD 393



 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 31/204 (15%)
 Frame = +3

Query: 18  SYNMVLDALGRNGRLDDAVELFDRMCK---------------------EHDPPRRI---- 122
           +YN ++    R   LD  + LFD M +                     +H+   R+    
Sbjct: 85  TYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKD 144

Query: 123 ----AVNLG--SFNVMVDAYCGVERFQDAIEVFGKMGEKSCTPDALSYNSLINWLGKNKL 284
                +N G  ++NV++DA C      +A+E+F +M +    P+ ++YN LIN L K++ 
Sbjct: 145 LQLAGLNPGPDTYNVLLDALCKCGYIDNALELFKEM-QSRFKPELMTYNILINGLCKSRR 203

Query: 285 VGEAEELYKEMGERGINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNK 464
           VG A+ +  E+ + G  P+  TY  +++  F+   +   +  F +M   G   +  A+  
Sbjct: 204 VGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFA 263

Query: 465 VISGLVKVDRIDEAQGFFDLMTEK 536
           V+S L+K  R  EA  +   +  K
Sbjct: 264 VVSALIKTGRTKEAYEYMQELVRK 287



 Score = 62.4 bits (150), Expect = 8e-10
 Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 2/173 (1%)
 Frame = +3

Query: 24  NMVLDALGRNGRLDDAVELF-DRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDAIEV 200
           N+ +D+L +  +L+ A  L  D +    DP      ++ ++N ++  YC     ++A  V
Sbjct: 17  NICVDSLCKFRKLEKAESLIIDGIRLGVDP------DVVTYNTLISGYCRFVGIEEAYAV 70

Query: 201 FGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPDEYTYVLLIESCFR 380
             +M +    PD  +YNSLI    +  ++     L+ EM E GI PD ++Y  L+   F+
Sbjct: 71  TRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFK 130

Query: 381 VDNVDDAVGYFSKMFDV-GLRPNANAFNKVISGLVKVDRIDEAQGFFDLMTEK 536
           +   ++A     K   + GL P  + +N ++  L K   ID A   F  M  +
Sbjct: 131 LGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALELFKEMQSR 183

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>PTCD1_MOUSE (Q8C2E4) Pentatricopeptide repeat protein 1|
          Length = 695

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 33/153 (21%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
 Frame = +3

Query: 18  SYNMVLDALGRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDAIE 197
           +Y +++   GR G L  A  LF+ M K+ D     A     FNV  ++       Q A++
Sbjct: 173 NYTVLIGGCGRVGYLKKAFRLFNDM-KKRDLEPSDATYTALFNVCAESPWKDSALQSALK 231

Query: 198 VFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPDEYTYVLLIESCF 377
           +  ++  ++   +  +Y++L+    K   +    +++KE+ +RG    E T+  L+  C 
Sbjct: 232 LRQQLQARNFQLNLKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTEETFCFLLVGCI 291

Query: 378 --RVDNVDDAVGYFSKMFDVGLRPNANAFNKVI 470
             +      A+  + +M  +G++P+ + +N ++
Sbjct: 292 QDKKTGFRQAMQVWRQMLSLGIKPSRHGYNLLL 324

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>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I|
          Length = 1261

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = +3

Query: 189  AIEVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPDEYTYVLLIE 368
            A+ +F +    +  P    YN++++ LG+ +   E  +L++EM E G+ P   TY  +I 
Sbjct: 910  ALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVIN 969

Query: 369  SCFRVDNVDDAVGYFSKMFD-VGLRPNANAFNKVI 470
            +  R+ +   A   F++M +    +P    +N +I
Sbjct: 970  AACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMI 1004



 Score = 36.2 bits (82), Expect = 0.060
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
 Frame = +3

Query: 21   YNMVLDALGRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDAIEV 200
            YN VL  LGR  R  +  +LF  M +    P  +     ++  +++A C +     A ++
Sbjct: 929  YNAVLSKLGRARRTTECWKLFQEMKESGLLPTSV-----TYGTVINAACRIGDESLAEKL 983

Query: 201  FGKM-GEKSCTPDALSYNSLINWLGKNKLVGE-AEELYKEMGERGINPDEYTYVLLIES 371
            F +M  + +  P    YN++I +  +     E A   Y  +    I P  +TY LL+++
Sbjct: 984  FAEMENQPNYQPRVAPYNTMIQFEVQTMFNREKALFYYNRLCATDIEPSSHTYKLLMDA 1042

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>Y728_ENTFA (Q837V0) Hypothetical RNA methyltransferase EF0728 (EC 2.1.1.-)|
          Length = 457

 Score = 37.4 bits (85), Expect = 0.027
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +3

Query: 147 VMVDAYCGVERF-----QDAIEVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYK 311
           ++VDAYCG+        QDA +V+G    +    DA +   L N        G AEEL  
Sbjct: 311 IVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEELLP 370

Query: 312 EMGERGINPD 341
           ++ E G+ PD
Sbjct: 371 KLVENGLQPD 380

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>Y768_OCEIH (Q8ES75) Hypothetical RNA methyltransferase OB0768 (EC 2.1.1.-)|
          Length = 459

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
 Frame = +3

Query: 129 NLGSFNVMVDAYCGVERF-----QDAIEVFGKMGEKSCTPDALSYNSLINWLGKNKL-VG 290
           N+   +V++DAYCG+        Q A +V+G         DA   N+ IN +   +  VG
Sbjct: 306 NIDKDDVVIDAYCGIGSISLFLAQKAKKVYGIEVVPEAIEDA-KMNAEINGMNNVEFSVG 364

Query: 291 EAEELYKEMGERGINPD 341
           +AE++  +  E+G++PD
Sbjct: 365 QAEKVMPKWKEQGLDPD 381

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>GLMM_BURPS (Q63V83) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 452

 Score = 33.5 bits (75), Expect = 0.39
 Identities = 38/152 (25%), Positives = 57/152 (37%), Gaps = 20/152 (13%)
 Frame = +3

Query: 36  DALGRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDAIEVFGKMG 215
           D LG+  RLDDA   +   CK   P    A +L    ++VD   G   +Q A  VF ++G
Sbjct: 149 DGLGKARRLDDAAGRYIEFCKSTFP---AAFDLRGMKLVVDCAHGA-AYQVAPHVFHELG 204

Query: 216 EK----SCTPDALSYNSLINWLGKNKLVGEAEELYKEMG----------------ERGIN 335
                    P+  + N  +     + L+      + ++G                 R  N
Sbjct: 205 ADVIPIGVAPNGFNINDGVGATAPDALMRAVRANHADLGIALDGDADRLLVVDHTGRLYN 264

Query: 336 PDEYTYVLLIESCFRVDNVDDAVGYFSKMFDV 431
            DE  YVL+ +       V+ AVG     F V
Sbjct: 265 GDELLYVLVKDRIATNGQVEGAVGTLMTNFAV 296

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>GLMM_BURMA (Q62L77) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 452

 Score = 33.5 bits (75), Expect = 0.39
 Identities = 38/152 (25%), Positives = 57/152 (37%), Gaps = 20/152 (13%)
 Frame = +3

Query: 36  DALGRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDAIEVFGKMG 215
           D LG+  RLDDA   +   CK   P    A +L    ++VD   G   +Q A  VF ++G
Sbjct: 149 DGLGKARRLDDAAGRYIEFCKSTFP---AAFDLRGMKLVVDCAHGA-AYQVAPHVFHELG 204

Query: 216 EK----SCTPDALSYNSLINWLGKNKLVGEAEELYKEMG----------------ERGIN 335
                    P+  + N  +     + L+      + ++G                 R  N
Sbjct: 205 ADVIPIGVAPNGFNINDGVGATAPDALMRAVRANHADLGIALDGDADRLLVVDHTGRLYN 264

Query: 336 PDEYTYVLLIESCFRVDNVDDAVGYFSKMFDV 431
            DE  YVL+ +       V+ AVG     F V
Sbjct: 265 GDELLYVLVKDRIATNGQVEGAVGTLMTNFAV 296

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>YG3M_YEAST (P48237) Hypothetical 101.4 kDa protein in RPL24B-RSR1 intergenic|
           region
          Length = 864

 Score = 32.7 bits (73), Expect = 0.67
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +3

Query: 120 IAVNLGSFNVMVDAYCGVERFQDAIEVFGKMGEKSCT--PDALSYNSLINWLGKNKLVGE 293
           I  N  +   ++  Y   E  + A   F  M   S    PD  +YN+++    K +   +
Sbjct: 316 ITPNKQNLTTVIQFYSRKEMTKQAWNTFDTMKFLSTKHFPDICTYNTMLRICEKERNFPK 375

Query: 294 AEELYKEMGERGINPDEYTYVLL 362
           A +L++E+ +  I P   TY+++
Sbjct: 376 ALDLFQEIQDHNIKPTTNTYIMM 398

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>RPOM_HUMAN (O00411) DNA-directed RNA polymerase, mitochondrial precursor (EC|
           2.7.7.6) (MtRPOL)
          Length = 1230

 Score = 32.3 bits (72), Expect = 0.87
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +3

Query: 114 RRIAVNLGSFNVMVDAYCGVERFQDAIEVFGKMGEKSCTPDALSYNSLINWLGK-NKLVG 290
           +R  + L  +N ++  +     F++ + V   + +   TPD LSY + +  +G+ ++  G
Sbjct: 255 KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG 314

Query: 291 EAEELYKEMGERGINPDE-YTYVLLIE 368
             E   ++M + G+     +T VLL E
Sbjct: 315 TIERCLEQMSQEGLKLQALFTAVLLSE 341

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>SNAG_ARATH (Q9SPE5) Gamma-soluble NSF attachment protein (Gamma-SNAP)|
           (N-ethylmaleimide-sensitive factor attachment protein,
           gamma)
          Length = 291

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = +3

Query: 36  DALGRNGRL------DDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDAIE 197
           DALG+  R       DDA++L+   C+  +   R  +    +    + Y  +E+F DA  
Sbjct: 112 DALGKAARALEDVKPDDAIQLYTDACEILEEDGRDQMAFDLYRACANVYIKLEKFTDAAT 171

Query: 198 VFGKMGEKSCTPDA 239
            F ++G  +   DA
Sbjct: 172 FFLRLGVAADKCDA 185

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>TPBG_MACFA (Q4R8Y9) Trophoblast glycoprotein precursor|
          Length = 420

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = -2

Query: 145 LKLPRFTAILLGGSCSLHILSNNSTASSNLPFLPSASS 32
           L+L R   +LLG   S    S+ S++SS+ PFL SA+S
Sbjct: 16  LRLARLALVLLGWVSSSSSTSSASSSSSSAPFLASAAS 53

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>ISPG2_STRAW (Q82ML3) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2 (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase 2)
          Length = 385

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 23/71 (32%), Positives = 32/71 (45%)
 Frame = +3

Query: 45  GRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDAIEVFGKMGEKS 224
           G   + DD V+   R  KEH  P RI VN GS +            +  +E +GK     
Sbjct: 120 GNIKQFDDKVKEIARAAKEHGTPIRIGVNAGSLD------------RRLLEKYGK----- 162

Query: 225 CTPDALSYNSL 257
            TP+AL  ++L
Sbjct: 163 ATPEALVESAL 173

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>YEHI_ECOLI (P33346) Hypothetical protein yehI|
          Length = 1210

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
 Frame = +3

Query: 228  TPDALSYNSLINWLGKNKLVGEAEELYKEMGERG------INPDEYTYVLLIESCFRVDN 389
            TPD  + NSL  W GK+  VG+   +  +  E G       N  EY  VL     F   N
Sbjct: 1108 TPDESTSNSLTRWEGKSATVGQLMGMRYKGWESGYEDAFVYNLGEYRLVLKFSPGFNHYN 1167

Query: 390  VD 395
            VD
Sbjct: 1168 VD 1169

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>DNAA_STRCH (Q9ZH75) Chromosomal replication initiator protein dnaA|
          Length = 624

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = -3

Query: 219 SHPFCQTPQLHPGTFPHRSK----HQPSH*NYQDSQQSSWEGHALCTSYQTTRLHHLTSR 52
           ++P  Q  +  PG +P   +     QP H  YQD +Q S E +    SY+         +
Sbjct: 146 AYPDYQQQRPEPGAWPRTQEDLSWQQPRHGGYQDREQPSGEPYRESESYRERENEQYREQ 205

Query: 51  SSQAHQAPCCS*QPQ 7
           + +  + P  + +PQ
Sbjct: 206 APEQWRQPYGTGRPQ 220

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>CCG8_NEUCR (Q01306) Clock-controlled protein 8|
          Length = 661

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = -3

Query: 528 SSDQRTPVPHQSYQPSPSHL*LC*RHWHWA*DQHQTSC*SNQQRHPHYQ 382
           SS Q     HQ YQ  P H      H H+   QHQ      Q +H H+Q
Sbjct: 14  SSQQHEHQQHQQYQQPPQH------HQHYEAPQHQ-----QQHQHHHHQ 51

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>5HT2A_DROME (P28285) 5-hydroxytryptamine receptor 2A (5-HT receptor) (Serotonin|
           receptor 2A)
          Length = 834

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 9/47 (19%)
 Frame = -3

Query: 228 CSSSHPFCQT---------PQLHPGTFPHRSKHQPSH*NYQDSQQSS 115
           C+ SHP C T         P+    T P +  HQ +H   Q  QQ S
Sbjct: 679 CNQSHPLCGTANESPSTPEPRSRQPTTPQQQPHQQAHQQQQQQQQLS 725

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>PO2F1_HUMAN (P14859) POU domain, class 2, transcription factor 1|
           (Octamer-binding transcription factor 1) (Oct-1) (OTF-1)
           (NF-A1)
          Length = 743

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
 Frame = -2

Query: 322 SPISLYNSSASPTSLFFPSQLI------RLLYESASGVQLFSPILPNTSIASWNLSTPQ* 161
           +P S   +S+SP    FPS          L+  SA+     SP+LP TS A  NLS    
Sbjct: 438 NPPSSGGTSSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPLTSAAVTNLSVTGT 497

Query: 160 ASTITLKLPRF--TAILLGGSCSLHILSNNSTASSNLPFLPSASST 29
           + T +        TA     + +   LS + +AS++     SAS T
Sbjct: 498 SDTTSNNTATVISTAPPASSAVTSPSLSPSPSASASTSEASSASET 543

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>FIG2_YEAST (P25653) Factor-induced gene 2 precursor (Cell wall adhesin FIG2)|
          Length = 1609

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
 Frame = -2

Query: 403  TASSTL-STLKQDSMSKT*VYSSGLIPRSPISLYNSSASPTSLFFPS----------QLI 257
            T+ STL +T +  S +K  + S+     + ISL  S+ S +S  + S          Q +
Sbjct: 1176 TSKSTLGATTQTSSTAKVRITSASSATSTSISLSTSTESESSSGYLSKGVCSGTECTQDV 1235

Query: 256  RLLYESASGVQLFSPILPNTSIASWNLSTPQ*ASTITLKLPRFTAILLGGSCSLHILSNN 77
                 S +    +SP +  +S +S++ +T   AST+T        +    S S    S+ 
Sbjct: 1236 PTQSSSPASTLAYSPSVSTSSSSSFSTTT---ASTLTSTHTSVPLLPSSSSISASSPSST 1292

Query: 76   STASSNLPFLPSASSTML*LTA 11
            S  S++LP     SST+   TA
Sbjct: 1293 SLLSTSLPSPAFTSSTLPTATA 1314

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>YSY1_CAEEL (Q20255) Hypothetical protein ZK328.7 in chromosome III|
          Length = 1332

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 8/142 (5%)
 Frame = +3

Query: 18   SYNMVLDALGRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDAIE 197
            SY+++ DA  +    +DA+  +++  K      ++A  +G   VM   Y     F ++  
Sbjct: 739  SYSLLGDAFMKVQEPEDAINFYEQALKMQSKDVQLAEKIGEAYVMAHLYSKAVNFYES-- 796

Query: 198  VFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINP-------DEYTYV 356
                    +   D      L N L K +   + E++ +   ER   P           ++
Sbjct: 797  ------SMNIYKDKNMRLKLANLLLKLRNFEKCEKVLRAPFERDPEPVGTETIQTYIQFL 850

Query: 357  LLIESCFR-VDNVDDAVGYFSK 419
            LL+  C   +DNV +A+  F K
Sbjct: 851  LLLAECHEMMDNVPEAMNDFEK 872

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>YR597_MIMIV (Q5UP66) Putative ankyrin repeat protein R597|
          Length = 274

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 20/77 (25%), Positives = 38/77 (49%)
 Frame = +3

Query: 273 KNKLVGEAEELYKEMGERGINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNAN 452
           +NK +    E+ K M + G++   +     + SC   DN +D V Y+   F++G   N  
Sbjct: 151 ENKYIYNNHEIVKYMIDNGVDIQGFNLSYALHSCIISDN-NDGVEYY---FNIGANINDL 206

Query: 453 AFNKVISGLVKVDRIDE 503
               V++ ++K +RI +
Sbjct: 207 DLESVVT-IIKYNRIQK 222

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>UPPS_STAAW (Q8NWZ5) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 256

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 183 QDAIEVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPD--EYTYV 356
           +  IE      EK+     L     IN+ G+ +LV   + ++ E+ ++G+N D  + TY+
Sbjct: 125 KSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYI 184

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>UPPS_STAAS (Q6G9V3) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 256

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 183 QDAIEVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPD--EYTYV 356
           +  IE      EK+     L     IN+ G+ +LV   + ++ E+ ++G+N D  + TY+
Sbjct: 125 KSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYI 184

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>UPPS_STAAR (Q6GHH5) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 256

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 183 QDAIEVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPD--EYTYV 356
           +  IE      EK+     L     IN+ G+ +LV   + ++ E+ ++G+N D  + TY+
Sbjct: 125 KSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYI 184

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>UPPS_STAAN (P60477) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 256

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 183 QDAIEVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPD--EYTYV 356
           +  IE      EK+     L     IN+ G+ +LV   + ++ E+ ++G+N D  + TY+
Sbjct: 125 KSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYI 184

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>UPPS_STAAM (P60476) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 256

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 183 QDAIEVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPD--EYTYV 356
           +  IE      EK+     L     IN+ G+ +LV   + ++ E+ ++G+N D  + TY+
Sbjct: 125 KSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYI 184

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>UPPS_STAAC (Q5HGH1) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 256

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 183 QDAIEVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPD--EYTYV 356
           +  IE      EK+     L     IN+ G+ +LV   + ++ E+ ++G+N D  + TY+
Sbjct: 125 KSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYI 184

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>ISPG1_STRAW (Q82K43) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1 (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase 1)
          Length = 385

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = +3

Query: 45  GRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDAIEVFGKMGEKS 224
           G   + DD V+   +  KEH  P RI VN GS +            +  +E +GK     
Sbjct: 119 GNIKQFDDKVKEIAKAAKEHGTPIRIGVNAGSLD------------RRLLEKYGK----- 161

Query: 225 CTPDALSYNSL 257
            TP+AL  ++L
Sbjct: 162 ATPEALVESAL 172

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>PO2F1_PIG (Q29076) POU domain, class 2, transcription factor 1|
           (Octamer-binding transcription factor 1) (Oct-1) (OTF-1)
           (NF-A1)
          Length = 745

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
 Frame = -2

Query: 322 SPISLYNSSASPTSLFFPSQLI------RLLYESASGVQLFSPILPNTSIASWNLS---- 173
           +P S   +S+SP    FPS          L+  SA+     +P+LP TS A  NLS    
Sbjct: 440 NPPSSGGTSSSPIKAIFPSPTSLVGTTPSLVTSSAATTLTVNPVLPLTSAAVTNLSVTGT 499

Query: 172 ---TPQ*ASTITLKLPRFTAILLGGSCSLHILSNNSTASSNLPFLPSASST 29
              T    +T+    P  ++ +   S     LS + +AS +   + SAS T
Sbjct: 500 TDTTSNNTATVISTAPPASSAVTSPS-----LSPSPSASGSTSEVSSASET 545

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>LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)|
           (Leucine-rich PPR motif-containing protein)
          Length = 1273

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 273 KNKLVGEAEELYKEMGERGINPDEYTYVLLIESCFRVDNVDDA 401
           K K V    E+ K M E G++PD+ TY   +  CF  D+V+ A
Sbjct: 330 KEKNVQGIIEILKGMQELGVHPDQETYTDYVIPCF--DSVNSA 370

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>GYRB_VIBPA (O51859) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 805

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +3

Query: 207 KMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKEMGERGINPDEYTYVLLIESCFRVD 386
           K GE+  T    S+   + WL K  + G + + YK +GE  +NPD+     +     R+ 
Sbjct: 709 KRGER--TLPVSSFAEALEWLVKESMRGLSRQRYKGLGE--MNPDQLWETTMDPETRRMM 764

Query: 387 NV--DDAVG 407
            V  +DAVG
Sbjct: 765 QVTIEDAVG 773

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>WIF1_HUMAN (Q9Y5W5) Wnt inhibitory factor 1 precursor (WIF-1)|
          Length = 379

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 3/85 (3%)
 Frame = -3

Query: 279 CSSPAS*SDYCM-RVHLVCSSSHP--FCQTPQLHPGTFPHRSKHQPSH*NYQDSQQSSWE 109
           C  P      C+ +    CS  +    C  P   PG   H + H+P+    +   Q  W 
Sbjct: 278 CPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPN----KCQCQEGWH 333

Query: 108 GHALCTSYQTTRLHHLTSRSSQAHQ 34
           G      Y+ + +H L    +Q  Q
Sbjct: 334 GRHCNKRYEASLIHALRPAGAQLRQ 358

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>TRUA_BACSV (Q45557) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 244

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 22/74 (29%), Positives = 30/74 (40%)
 Frame = +3

Query: 303 LYKEMGERGINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLV 482
           LYK   E   +P    Y L IE    +DN+  A   F    D     NA +  K  +  +
Sbjct: 112 LYKIWNEDYTHPFMRKYSLHIEKKLHIDNMVKASQLFVGEHDFTAFSNAKSKKKTNTRTI 171

Query: 483 KVDRIDEAQGFFDL 524
               I + QGF D+
Sbjct: 172 HSITIQDNQGFIDI 185

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>Y1988_STAAR (Q6GFG0) Hypothetical RNA methyltransferase SAR1988 (EC 2.1.1.-)|
          Length = 453

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = +3

Query: 147 VMVDAYCGVERF-----QDAIEVFGKMGEKSCTPDALSYNSLINWLGKNKLV-GEAEELY 308
           V++D YCG+          A  V+G     S   DA   N+ IN       V G+AEE+ 
Sbjct: 310 VVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDA-QQNATINQCNNTTFVCGKAEEVI 368

Query: 309 KEMGERGINPD 341
            +   +GI PD
Sbjct: 369 LQWKAQGIKPD 379

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>Y1838_STAAW (Q8NVT4) Hypothetical RNA methyltransferase MW1838 (EC 2.1.1.-)|
          Length = 453

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = +3

Query: 147 VMVDAYCGVERF-----QDAIEVFGKMGEKSCTPDALSYNSLINWLGKNKLV-GEAEELY 308
           V++D YCG+          A  V+G     S   DA   N+ IN       V G+AEE+ 
Sbjct: 310 VVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDA-QQNATINQCNNTTFVCGKAEEVI 368

Query: 309 KEMGERGINPD 341
            +   +GI PD
Sbjct: 369 LQWKAQGIKPD 379

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>Y1819_STAAS (Q6G836) Hypothetical RNA methyltransferase SAS1819 (EC 2.1.1.-)|
          Length = 453

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = +3

Query: 147 VMVDAYCGVERF-----QDAIEVFGKMGEKSCTPDALSYNSLINWLGKNKLV-GEAEELY 308
           V++D YCG+          A  V+G     S   DA   N+ IN       V G+AEE+ 
Sbjct: 310 VVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDA-QQNATINQCNNTTFVCGKAEEVI 368

Query: 309 KEMGERGINPD 341
            +   +GI PD
Sbjct: 369 LQWKAQGIKPD 379

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>GLMM_RALSO (Q8XZ76) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 447

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +3

Query: 36  DALGRNGRLDDAVELFDRMCKEHDPPRRIAVNLGSFNVMVDAYCGVERFQDAIEVFGKMG 215
           DALGR  R+DDA   +   CK   P     +NL    +++D+  G   +  A  VF ++G
Sbjct: 148 DALGRARRIDDAAGRYIEFCKSTFPN---DLNLFGMKIVLDSAHGA-AYHIAPHVFHELG 203

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>AEP3_KLULA (Q6CIF3) ATPase expression protein 3|
          Length = 593

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
 Frame = +3

Query: 141 FNVMVDAYCGVERFQDAIEVFGKMGEKSCTPDALSYNSLINWLGKNKLVGEAEELYKE-- 314
           FN ++  Y     F    E++ +M  +   P+  +YN ++  L +N  + + +  Y+E  
Sbjct: 216 FNDVIYYYGNKNNFATCRELYAQMKSEGIAPNVQTYNLMLRNLLRNSRLIKQQLPYREAI 275

Query: 315 -----MGERGINPDEYTYVLLIESCFRV--DNVDDAVGYFSKMFDVGL 437
                M +  I+ D  T+     +C+ +  DN+  A+ +  KM + G+
Sbjct: 276 FYLERMKKENISADVITW----NTCYFLLKDNISRAI-FLEKMVERGV 318

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>Y1897_STAAM (Q99SY9) Hypothetical RNA methyltransferase SAV1897 (EC 2.1.1.-)|
          Length = 453

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = +3

Query: 147 VMVDAYCGVERF-----QDAIEVFGKMGEKSCTPDALSYNSLINWLGKNKLV-GEAEELY 308
           V++D YCG+          A  V+G     S   DA   N+ IN       V G+AEE+ 
Sbjct: 310 VVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSSIEDA-QQNATINQCNNTTFVCGKAEEVI 368

Query: 309 KEMGERGINPD 341
            +   +GI PD
Sbjct: 369 LQWKAQGIKPD 379

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>Y1713_STAAN (Q7A4Q9) Hypothetical RNA methyltransferase SA1713 (EC 2.1.1.-)|
          Length = 453

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = +3

Query: 147 VMVDAYCGVERF-----QDAIEVFGKMGEKSCTPDALSYNSLINWLGKNKLV-GEAEELY 308
           V++D YCG+          A  V+G     S   DA   N+ IN       V G+AEE+ 
Sbjct: 310 VVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSSIEDA-QQNATINQCNNTTFVCGKAEEVI 368

Query: 309 KEMGERGINPD 341
            +   +GI PD
Sbjct: 369 LQWKAQGIKPD 379

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>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
 Frame = -2

Query: 400 ASSTLSTLKQDSMSKT*VYSSGLIPRSPISLYNSSASP-TSLFFPSQLIRLLYESASGVQ 224
           +SST  +      S T   SS  +P    S   SS++P TS    S    +   S+S  +
Sbjct: 531 SSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSTPVTSSTTESSSAPVPTPSSSTTE 590

Query: 223 LFSPILPNTSIASWNLS-----TPQ*ASTITLKLPRFTAILLGGSCSLHILSNNSTASSN 59
             S  +P  S ++   S     TP  ++T +   P  ++     S  +   S+++T SS+
Sbjct: 591 SSSAPVPTPSSSTTESSSAPAPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSS 650

Query: 58  LPFLPSASSTML*LTAP 8
            P    +SST    +AP
Sbjct: 651 APVPTPSSSTTESSSAP 667

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>SSP2_BOMMO (P20613) Sex-specific storage-protein 2 precursor (SP 2)|
           (Arylphorin)
          Length = 704

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 236 IWCAALLTHFAKHLNCILEPFHTAVSINHHIKTTKIHSNPPGRVMLF 96
           +W A LL H+++ L CI   F     +N  + T  I       +MLF
Sbjct: 654 LWIAPLLMHYSRFLTCISRIFSFTTRVNGSL-TNSIFLRMTHMIMLF 699

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>MYCPP_HUMAN (Q7Z401) C-myc promoter-binding protein|
          Length = 1863

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +3

Query: 273 KNKLVGEAEELYKEMGERGINP-DEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNA 449
           K + +  A ++ K+M  + ++P DE  Y +L++ C + D    AV    +M   G+ PNA
Sbjct: 786 KVRALKTAYDVLKKMQSKKMDPPDEVCYRILMQLCGQYDQPVLAVRVLFEMQKAGIDPNA 845

Query: 450 ---NAFNKVI 470
                +NK +
Sbjct: 846 ITYGYYNKAV 855

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>CYP7_YEAST (P47103) Peptidyl-prolyl cis-trans isomerase CYP7 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 393

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
 Frame = +3

Query: 156 DAYCGVERFQDAIEVFGKMGE--------KSCTPDALSYNSLINWLGKNKLVGEAEELYK 311
           D + G + F  A+E    + E        K  +     Y   +N++  N+ + E + + K
Sbjct: 225 DTHFGDDDFGKALEAANIIKESGTLLFKKKDYSNAFFKYRKSLNYI--NEYMPEPD-VDK 281

Query: 312 EMGERGINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPN---ANAFNKVISGLV 482
           E   + IN     Y+ L    F ++  DDA+ Y + + ++   PN   A A+ +  +  +
Sbjct: 282 ERNIQFINLKMKIYLNLSLVLFNLERYDDAIMYATYLLEMDNVPNRDQAKAYYRRGNSYL 341

Query: 483 KVDRIDEAQGFFDLMTEK 536
           K  R+DEA   +    EK
Sbjct: 342 KKKRLDEALQDYIFCKEK 359


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,007,491
Number of Sequences: 219361
Number of extensions: 1769299
Number of successful extensions: 5406
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 5163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5375
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result