Clone Information

BLAST Search Result

Clone Name	basd18i03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_469862.1\| Oryza sativa (japonica cultivar-group), mRNA	396	e-107
2	dbj\|AK068309.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	396	e-107
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	125	2e-25
4	gb\|AC090713.6\| Oryza sativa chromosome 3 BAC OSJNBa0002J24 genom...	125	2e-25
5	gb\|AC084282.6\| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genom...	125	2e-25
6	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	125	2e-25
7	gb\|AF211527.1\| Nicotiana tabacum Avr9/Cf-9 rapidly elicited prot...	44	0.50
8	gb\|AC146030.3\| Pan troglodytes BAC clone RP43-124E21 from chromo...	42	2.0
9	emb\|AL450309.14\| Human DNA sequence from clone RP11-478H16 on ch...	42	2.0
10	gb\|AC006433.18\|AC006433 Homo sapiens, clone RP11-6A1, complete s...	42	2.0
11	emb\|AL954226.2\|PTB126M21 Pan troglodytes chromosome 22 BAC PTB-1...	42	2.0
12	gb\|AC135121.4\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.9
13	gb\|AC113998.5\| Mus musculus BAC clone RP23-137C20 from 13, compl...	40	7.9
14	gb\|AY358708.1\| Homo sapiens clone DNA76385 KFLL827 (UNQ827) mRNA...	40	7.9
15	gb\|AC142284.1\| Pan troglodytes BAC clone RP43-163P11 from 7, com...	40	7.9
16	gb\|CP000319.1\| Nitrobacter hamburgensis X14, complete genome	40	7.9
17	emb\|AL078591.18\|HSDJ198I9 Human DNA sequence from clone RP1-198I...	40	7.9
18	emb\|AL034548.25\|HS1103G7 Human DNA sequence from clone RP5-1103G...	40	7.9
19	emb\|CR543861.1\| Acinetobacter sp. ADP1 complete genome	40	7.9
20	gb\|AC116331.2\| Homo sapiens chromosome 5 clone CTD-2037A14, comp...	40	7.9
21	gb\|AC004655.1\| Homo sapiens Xp22-140-141 BAC GSHB-128G5 (Genome ...	40	7.9
22	gb\|AC079168.22\| Homo sapiens Xp BAC RP11-753E22 (Roswell Park Ca...	40	7.9
23	gb\|AC073468.9\| Homo sapiens BAC clone RP11-405I21 from 7, comple...	40	7.9
24	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.9
25	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.9
26	gb\|AF322013.1\|AF322012S2 Bradyrhizobium japonicum symbiotic gene...	40	7.9
27	ref\|NM_207469.1\| Homo sapiens defensin, beta 32 (UNQ827) (DEFB32...	40	7.9
28	gb\|AE010301.1\| Leptospira interrogans serovar Lai str. 56601 chr...	40	7.9
29	gb\|AY099133.1\| Cercomonas edax isolate pub5 polyubiquitin gene, ...	40	7.9
30	gb\|AY099132.1\| Cercomonas edax isolate pub4 polyubiquitin gene, ...	40	7.9
31	gb\|AY099131.1\| Cercomonas edax isolate pub3 polyubiquitin gene, ...	40	7.9
32	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	7.9
33	dbj\|AP001985.5\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	7.9
34	dbj\|AP001001.5\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	7.9
35	dbj\|AP000708.5\| Homo sapiens genomic DNA, chromosome 11 clone:CM...	40	7.9
36	gb\|AC102632.8\| Mus musculus chromosome 5, clone RP23-286C5, comp...	40	7.9
37	gb\|AE015451.1\| Pseudomonas putida KT2440 complete genome	40	7.9
38	dbj\|AP003069.2\| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	7.9
39	gb\|AE016824.1\| Leptospira interrogans serovar Copenhageni str. F...	40	7.9
40	emb\|AL807741.8\| Mouse DNA sequence from clone RP23-224B9 on chro...	40	7.9
41	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.9
42	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.9
43	emb\|AL844877.2\|CNS08CB0 Oryza sativa chromosome 12, . BAC OSJNBb...	40	7.9
44	gb\|AC171898.2\| Capitella capitata clone JGIBGZA-37B13, complete ...	40	7.9
45	dbj\|AB066295.1\| Pseudomonas putida cyoA, cyoB, cyoC, cyoD, cyoE ...	40	7.9

>ref|XM_469862.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1518

 Score =  396 bits (200), Expect = e-107
 Identities = 386/448 (86%)
 Strand = Plus / Plus

                                                                        
Query: 46   tcctgggaacaatcactgggttggacaccagtggagaggaaggatcttgctgtgtctatg 105
            |||||||||| || ||||| |||| ||||| ||| |||||||||||||||||||||||||
Sbjct: 1022 tcctgggaactattactggcttggccaccactggggaggaaggatcttgctgtgtctatg 1081

                                                                        
Query: 106  atagccatggaataaagacccatgtaattgttaagcacaggacactgatggttaaacaca 165
            |||||| ||| |||||||| ||| ||||||| |||||||| ||| | ||||| |||||||
Sbjct: 1082 atagccgtgggataaagacacatctaattgtcaagcacagaacattaatggtcaaacaca 1141

                                                                        
Query: 166  tgcactggtatcaatttggagatgaagtttcaccctgtgagtgtcgatgtagcagggctc 225
            |||||||||||||| ||||||||||| |||| || |||||||||||||| || |||||||
Sbjct: 1142 tgcactggtatcaagttggagatgaaatttctccatgtgagtgtcgatgcagtagggctc 1201

                                                                        
Query: 226  gcttgccacccagcaggttttggctttttgagccacggtgttacatgcatgacactggtg 285
            | |||||||| || || | ||||||||||||||| || ||||| ||||||||||||||||
Sbjct: 1202 ggttgccacctagtagatattggctttttgagcctcgttgttatatgcatgacactggtg 1261

                                                                        
Query: 286  gttggtacatcgagacatttgggagagacaagaaagggaggacaattccatcaccgagac 345
            | |||||||| ||||| ||||| || |||||||||||||||| ||||| |||||| ||||
Sbjct: 1262 gctggtacattgagacctttggaagggacaagaaagggaggaaaattctatcaccaagac 1321

                                                                        
Query: 346  agtggcatggtgtcaatgagcattctgaaaagagattgcatccagcactgtatctggtgg 405
            | ||| |||||  |||||| || ||||||| ||| |||||||||||| |||||||||  |
Sbjct: 1322 aatgggatggttccaatgaacactctgaaaggaggttgcatccagcaatgtatctggcag 1381

                                                                        
Query: 406  ctctggcatacagatctttagatcttgaggatgctcaaagaagaaaatggagctttagga 465
            |||| || ||||||||||| ||| |||||||||||||| |||  ||||||||| ||| ||
Sbjct: 1382 ctctagcttacagatctttggatattgaggatgctcaacgaaagaaatggagcattacga 1441

                                        
Query: 466  ctttcttagagctgcagttatctcatat 493
            | ||| | || ||||||| |||||||||
Sbjct: 1442 ccttcctggaactgcagtcatctcatat 1469

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>dbj|AK068309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149B16, full
            insert sequence
          Length = 2223

 Score =  396 bits (200), Expect = e-107
 Identities = 386/448 (86%)
 Strand = Plus / Plus

                                                                        
Query: 46   tcctgggaacaatcactgggttggacaccagtggagaggaaggatcttgctgtgtctatg 105
            |||||||||| || ||||| |||| ||||| ||| |||||||||||||||||||||||||
Sbjct: 1064 tcctgggaactattactggcttggccaccactggggaggaaggatcttgctgtgtctatg 1123

                                                                        
Query: 106  atagccatggaataaagacccatgtaattgttaagcacaggacactgatggttaaacaca 165
            |||||| ||| |||||||| ||| ||||||| |||||||| ||| | ||||| |||||||
Sbjct: 1124 atagccgtgggataaagacacatctaattgtcaagcacagaacattaatggtcaaacaca 1183

                                                                        
Query: 166  tgcactggtatcaatttggagatgaagtttcaccctgtgagtgtcgatgtagcagggctc 225
            |||||||||||||| ||||||||||| |||| || |||||||||||||| || |||||||
Sbjct: 1184 tgcactggtatcaagttggagatgaaatttctccatgtgagtgtcgatgcagtagggctc 1243

                                                                        
Query: 226  gcttgccacccagcaggttttggctttttgagccacggtgttacatgcatgacactggtg 285
            | |||||||| || || | ||||||||||||||| || ||||| ||||||||||||||||
Sbjct: 1244 ggttgccacctagtagatattggctttttgagcctcgttgttatatgcatgacactggtg 1303

                                                                        
Query: 286  gttggtacatcgagacatttgggagagacaagaaagggaggacaattccatcaccgagac 345
            | |||||||| ||||| ||||| || |||||||||||||||| ||||| |||||| ||||
Sbjct: 1304 gctggtacattgagacctttggaagggacaagaaagggaggaaaattctatcaccaagac 1363

                                                                        
Query: 346  agtggcatggtgtcaatgagcattctgaaaagagattgcatccagcactgtatctggtgg 405
            | ||| |||||  |||||| || ||||||| ||| |||||||||||| |||||||||  |
Sbjct: 1364 aatgggatggttccaatgaacactctgaaaggaggttgcatccagcaatgtatctggcag 1423

                                                                        
Query: 406  ctctggcatacagatctttagatcttgaggatgctcaaagaagaaaatggagctttagga 465
            |||| || ||||||||||| ||| |||||||||||||| |||  ||||||||| ||| ||
Sbjct: 1424 ctctagcttacagatctttggatattgaggatgctcaacgaaagaaatggagcattacga 1483

                                        
Query: 466  ctttcttagagctgcagttatctcatat 493
            | ||| | || ||||||| |||||||||
Sbjct: 1484 ccttcctggaactgcagtcatctcatat 1511

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  125 bits (63), Expect = 2e-25
 Identities = 114/131 (87%)
 Strand = Plus / Plus

                                                                            
Query: 245      ttggctttttgagccacggtgttacatgcatgacactggtggttggtacatcgagacatt 304
                ||||||||||||||| || ||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct: 31194024 ttggctttttgagcctcgttgttatatgcatgacactggtggctggtacattgagacctt 31194083

                                                                            
Query: 305      tgggagagacaagaaagggaggacaattccatcaccgagacagtggcatggtgtcaatga 364
                ||| || |||||||||||||||| ||||| |||||| ||||| ||| |||||  ||||||
Sbjct: 31194084 tggaagggacaagaaagggaggaaaattctatcaccaagacaatgggatggttccaatga 31194143

                           
Query: 365      gcattctgaaa 375
                 || |||||||
Sbjct: 31194144 acactctgaaa 31194154



 Score =  111 bits (56), Expect = 3e-21
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                            
Query: 46       tcctgggaacaatcactgggttggacaccagtggagaggaaggatcttgctgtgtctatg 105
                |||||||||| || ||||| |||| ||||| ||| |||||||||||||||||||||||||
Sbjct: 31193271 tcctgggaactattactggcttggccaccactggggaggaaggatcttgctgtgtctatg 31193330

                                                        
Query: 106      atagccatggaataaagacccatgtaattgttaagcacag 145
                |||||| ||| |||||||| ||| ||||||| ||||||||
Sbjct: 31193331 atagccgtgggataaagacacatctaattgtcaagcacag 31193370



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                            
Query: 159      aaacacatgcactggtatcaatttggagatgaagtttcaccctgtgagtgtcgatgtagc 218
                ||||||||||||||||||||| ||||||||||| |||| || |||||||||||||| || 
Sbjct: 31193589 aaacacatgcactggtatcaagttggagatgaaatttctccatgtgagtgtcgatgcagt 31193648

                                 
Query: 219      agggctcgcttgccacc 235
                |||||||| ||||||||
Sbjct: 31193649 agggctcggttgccacc 31193665



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 96/113 (84%)
 Strand = Plus / Plus

                                                                            
Query: 381      ttgcatccagcactgtatctggtggctctggcatacagatctttagatcttgaggatgct 440
                |||||||||||| |||||||||  ||||| || ||||||||||| ||| |||||||||||
Sbjct: 31194568 ttgcatccagcaatgtatctggcagctctagcttacagatctttggatattgaggatgct 31194627

                                                                     
Query: 441      caaagaagaaaatggagctttaggactttcttagagctgcagttatctcatat 493
                ||| |||  ||||||||| ||| ||| ||| | || ||||||| |||||||||
Sbjct: 31194628 caacgaaagaaatggagcattacgaccttcctggaactgcagtcatctcatat 31194680

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>gb|AC090713.6| Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence,
            complete sequence
          Length = 146022

 Score =  125 bits (63), Expect = 2e-25
 Identities = 114/131 (87%)
 Strand = Plus / Plus

                                                                        
Query: 245  ttggctttttgagccacggtgttacatgcatgacactggtggttggtacatcgagacatt 304
            ||||||||||||||| || ||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct: 1265 ttggctttttgagcctcgttgttatatgcatgacactggtggctggtacattgagacctt 1324

                                                                        
Query: 305  tgggagagacaagaaagggaggacaattccatcaccgagacagtggcatggtgtcaatga 364
            ||| || |||||||||||||||| ||||| |||||| ||||| ||| |||||  ||||||
Sbjct: 1325 tggaagggacaagaaagggaggaaaattctatcaccaagacaatgggatggttccaatga 1384

                       
Query: 365  gcattctgaaa 375
             || |||||||
Sbjct: 1385 acactctgaaa 1395



 Score =  111 bits (56), Expect = 3e-21
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                       
Query: 46  tcctgggaacaatcactgggttggacaccagtggagaggaaggatcttgctgtgtctatg 105
           |||||||||| || ||||| |||| ||||| ||| |||||||||||||||||||||||||
Sbjct: 512 tcctgggaactattactggcttggccaccactggggaggaaggatcttgctgtgtctatg 571

                                                   
Query: 106 atagccatggaataaagacccatgtaattgttaagcacag 145
           |||||| ||| |||||||| ||| ||||||| ||||||||
Sbjct: 572 atagccgtgggataaagacacatctaattgtcaagcacag 611



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                       
Query: 159 aaacacatgcactggtatcaatttggagatgaagtttcaccctgtgagtgtcgatgtagc 218
           ||||||||||||||||||||| ||||||||||| |||| || |||||||||||||| || 
Sbjct: 830 aaacacatgcactggtatcaagttggagatgaaatttctccatgtgagtgtcgatgcagt 889

                            
Query: 219 agggctcgcttgccacc 235
           |||||||| ||||||||
Sbjct: 890 agggctcggttgccacc 906



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 96/113 (84%)
 Strand = Plus / Plus

                                                                        
Query: 381  ttgcatccagcactgtatctggtggctctggcatacagatctttagatcttgaggatgct 440
            |||||||||||| |||||||||  ||||| || ||||||||||| ||| |||||||||||
Sbjct: 1809 ttgcatccagcaatgtatctggcagctctagcttacagatctttggatattgaggatgct 1868

                                                                 
Query: 441  caaagaagaaaatggagctttaggactttcttagagctgcagttatctcatat 493
            ||| |||  ||||||||| ||| ||| ||| | || ||||||| |||||||||
Sbjct: 1869 caacgaaagaaatggagcattacgaccttcctggaactgcagtcatctcatat 1921

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>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
              sequence
          Length = 128017

 Score =  125 bits (63), Expect = 2e-25
 Identities = 114/131 (87%)
 Strand = Plus / Plus

                                                                          
Query: 245    ttggctttttgagccacggtgttacatgcatgacactggtggttggtacatcgagacatt 304
              ||||||||||||||| || ||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct: 114665 ttggctttttgagcctcgttgttatatgcatgacactggtggctggtacattgagacctt 114724

                                                                          
Query: 305    tgggagagacaagaaagggaggacaattccatcaccgagacagtggcatggtgtcaatga 364
              ||| || |||||||||||||||| ||||| |||||| ||||| ||| |||||  ||||||
Sbjct: 114725 tggaagggacaagaaagggaggaaaattctatcaccaagacaatgggatggttccaatga 114784

                         
Query: 365    gcattctgaaa 375
               || |||||||
Sbjct: 114785 acactctgaaa 114795



 Score =  111 bits (56), Expect = 3e-21
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                          
Query: 46     tcctgggaacaatcactgggttggacaccagtggagaggaaggatcttgctgtgtctatg 105
              |||||||||| || ||||| |||| ||||| ||| |||||||||||||||||||||||||
Sbjct: 113912 tcctgggaactattactggcttggccaccactggggaggaaggatcttgctgtgtctatg 113971

                                                      
Query: 106    atagccatggaataaagacccatgtaattgttaagcacag 145
              |||||| ||| |||||||| ||| ||||||| ||||||||
Sbjct: 113972 atagccgtgggataaagacacatctaattgtcaagcacag 114011



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                          
Query: 159    aaacacatgcactggtatcaatttggagatgaagtttcaccctgtgagtgtcgatgtagc 218
              ||||||||||||||||||||| ||||||||||| |||| || |||||||||||||| || 
Sbjct: 114230 aaacacatgcactggtatcaagttggagatgaaatttctccatgtgagtgtcgatgcagt 114289

                               
Query: 219    agggctcgcttgccacc 235
              |||||||| ||||||||
Sbjct: 114290 agggctcggttgccacc 114306



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 96/113 (84%)
 Strand = Plus / Plus

                                                                          
Query: 381    ttgcatccagcactgtatctggtggctctggcatacagatctttagatcttgaggatgct 440
              |||||||||||| |||||||||  ||||| || ||||||||||| ||| |||||||||||
Sbjct: 115209 ttgcatccagcaatgtatctggcagctctagcttacagatctttggatattgaggatgct 115268

                                                                   
Query: 441    caaagaagaaaatggagctttaggactttcttagagctgcagttatctcatat 493
              ||| |||  ||||||||| ||| ||| ||| | || ||||||| |||||||||
Sbjct: 115269 caacgaaagaaatggagcattacgaccttcctggaactgcagtcatctcatat 115321

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  125 bits (63), Expect = 2e-25
 Identities = 114/131 (87%)
 Strand = Plus / Plus

                                                                            
Query: 245      ttggctttttgagccacggtgttacatgcatgacactggtggttggtacatcgagacatt 304
                ||||||||||||||| || ||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct: 31284547 ttggctttttgagcctcgttgttatatgcatgacactggtggctggtacattgagacctt 31284606

                                                                            
Query: 305      tgggagagacaagaaagggaggacaattccatcaccgagacagtggcatggtgtcaatga 364
                ||| || |||||||||||||||| ||||| |||||| ||||| ||| |||||  ||||||
Sbjct: 31284607 tggaagggacaagaaagggaggaaaattctatcaccaagacaatgggatggttccaatga 31284666

                           
Query: 365      gcattctgaaa 375
                 || |||||||
Sbjct: 31284667 acactctgaaa 31284677



 Score =  111 bits (56), Expect = 3e-21
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                            
Query: 46       tcctgggaacaatcactgggttggacaccagtggagaggaaggatcttgctgtgtctatg 105
                |||||||||| || ||||| |||| ||||| ||| |||||||||||||||||||||||||
Sbjct: 31283794 tcctgggaactattactggcttggccaccactggggaggaaggatcttgctgtgtctatg 31283853

                                                        
Query: 106      atagccatggaataaagacccatgtaattgttaagcacag 145
                |||||| ||| |||||||| ||| ||||||| ||||||||
Sbjct: 31283854 atagccgtgggataaagacacatctaattgtcaagcacag 31283893



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                            
Query: 159      aaacacatgcactggtatcaatttggagatgaagtttcaccctgtgagtgtcgatgtagc 218
                ||||||||||||||||||||| ||||||||||| |||| || |||||||||||||| || 
Sbjct: 31284112 aaacacatgcactggtatcaagttggagatgaaatttctccatgtgagtgtcgatgcagt 31284171

                                 
Query: 219      agggctcgcttgccacc 235
                |||||||| ||||||||
Sbjct: 31284172 agggctcggttgccacc 31284188



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 96/113 (84%)
 Strand = Plus / Plus

                                                                            
Query: 381      ttgcatccagcactgtatctggtggctctggcatacagatctttagatcttgaggatgct 440
                |||||||||||| |||||||||  ||||| || ||||||||||| ||| |||||||||||
Sbjct: 31285091 ttgcatccagcaatgtatctggcagctctagcttacagatctttggatattgaggatgct 31285150

                                                                     
Query: 441      caaagaagaaaatggagctttaggactttcttagagctgcagttatctcatat 493
                ||| |||  ||||||||| ||| ||| ||| | || ||||||| |||||||||
Sbjct: 31285151 caacgaaagaaatggagcattacgaccttcctggaactgcagtcatctcatat 31285203

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>gb|AF211527.1| Nicotiana tabacum Avr9/Cf-9 rapidly elicited protein 1 (ACRE1)
           mRNA, complete cds
          Length = 1167

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 176 tcaatttggagatgaagtttca 197
           ||||||||||||||||||||||
Sbjct: 278 tcaatttggagatgaagtttca 299

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>gb|AC146030.3| Pan troglodytes BAC clone RP43-124E21 from chromosome 7, complete
              sequence
          Length = 169275

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 179    atttggagatgaagtttcaccctgt 203
              |||| ||||||||||||||||||||
Sbjct: 131055 attttgagatgaagtttcaccctgt 131079

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>emb|AL450309.14| Human DNA sequence from clone RP11-478H16 on chromosome 1 Contains the
             5' end of the ERO1LB gene for ERO1-like beta (S.
             cerevisiae), an  FK506 binding protein 3, 25kDa (FKBP3)
             pseudogene, the 5' UTR of a variant of the EDARADD gene
             for EDAR-associated death domain and three CpG islands,
             complete sequence
          Length = 166647

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 431   tgaggatgctcaaagaagaaa 451
             |||||||||||||||||||||
Sbjct: 18181 tgaggatgctcaaagaagaaa 18161

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>gb|AC006433.18|AC006433 Homo sapiens, clone RP11-6A1, complete sequence
          Length = 179563

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 243   ttttggctttttgagccacgg 263
             |||||||||||||||||||||
Sbjct: 28943 ttttggctttttgagccacgg 28923

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>emb|AL954226.2|PTB126M21 Pan troglodytes chromosome 22 BAC PTB-126M21, complete sequence
          Length = 188320

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 80    agaggaaggatcttgctgtgt 100
             |||||||||||||||||||||
Sbjct: 43954 agaggaaggatcttgctgtgt 43974

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>gb|AC135121.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0089M05, complete sequence
          Length = 131308

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 389   agcactgtatctggtggctc 408
             ||||||||||||||||||||
Sbjct: 62870 agcactgtatctggtggctc 62889

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>gb|AC113998.5| Mus musculus BAC clone RP23-137C20 from 13, complete sequence
          Length = 194221

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     tcttgctgtgtctatgatag 109
              ||||||||||||||||||||
Sbjct: 159919 tcttgctgtgtctatgatag 159938

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>gb|AY358708.1| Homo sapiens clone DNA76385 KFLL827 (UNQ827) mRNA, complete cds
          Length = 2119

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 464 gactttcttagagctgcagt 483
           ||||||||||||||||||||
Sbjct: 774 gactttcttagagctgcagt 755

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>gb|AC142284.1| Pan troglodytes BAC clone RP43-163P11 from 7, complete sequence
          Length = 171686

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    gagatgaagtttcaccctgt 203
              ||||||||||||||||||||
Sbjct: 130894 gagatgaagtttcaccctgt 130875

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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 552     tgagaaacaggcagcagtttcagg 575
               |||||||||| |||||||||||||
Sbjct: 4379465 tgagaaacagccagcagtttcagg 4379442

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>emb|AL078591.18|HSDJ198I9 Human DNA sequence from clone RP1-198I9 on chromosome 6q12-13 Contains
             the 3' end of a novel gene (KIAA1411, FLJ20176, FLJ11049),
             complete sequence
          Length = 144649

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 180   tttggagatgaagtttcaccctgt 203
             |||||||||| |||||||||||||
Sbjct: 53175 tttggagatggagtttcaccctgt 53198

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>emb|AL034548.25|HS1103G7 Human DNA sequence from clone RP5-1103G7 on chromosome 20p12.2-13
             Contains the C20orf96 gene, the C20orf99 gene, a novel
             gene, the SOX12 gene for SRY (sex-determining region
             Y)-box 12, the C20orf98 gene for chromosome 20 open
             reading frame 98 (similar to mouse VMP, FLJ23329), the
             C20orf97 gene for a novel kinase domain-containing protein
             similar to phosphoprotein C8FW and rat NIPK, the gene for
             a novel defensin protein (DEFB32, UNQ827, KFLL827) and
             five CpG islands, complete sequence
          Length = 153170

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 464   gactttcttagagctgcagt 483
             ||||||||||||||||||||
Sbjct: 14424 gactttcttagagctgcagt 14405

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>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 388    cagcactgtatctggtggct 407
              ||||||||||||||||||||
Sbjct: 397597 cagcactgtatctggtggct 397616

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>gb|AC116331.2| Homo sapiens chromosome 5 clone CTD-2037A14, complete sequence
          Length = 105259

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   gagatgaagtttcaccctgt 203
             ||||||||||||||||||||
Sbjct: 42838 gagatgaagtttcaccctgt 42857

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>gb|AC004655.1| Homo sapiens Xp22-140-141 BAC GSHB-128G5 (Genome Systems Human BAC
             library) complete sequence
          Length = 134929

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 180   tttggagatgaagtttcaccctgt 203
             ||||||||||||||||||| ||||
Sbjct: 78291 tttggagatgaagtttcactctgt 78314

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>gb|AC079168.22| Homo sapiens Xp BAC RP11-753E22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 151012

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 180   tttggagatgaagtttcaccctgt 203
             ||||||||||||||||||| ||||
Sbjct: 10672 tttggagatgaagtttcactctgt 10649

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>gb|AC073468.9| Homo sapiens BAC clone RP11-405I21 from 7, complete sequence
          Length = 138435

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   gagatgaagtttcaccctgt 203
             ||||||||||||||||||||
Sbjct: 74267 gagatgaagtttcaccctgt 74286

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 550     catgagaaacaggcagcagtttcaggaa 577
               ||||||||||||| |||| |||||||||
Sbjct: 8589864 catgagaaacagggagcattttcaggaa 8589837

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 389      agcactgtatctggtggctc 408
                ||||||||||||||||||||
Sbjct: 16895124 agcactgtatctggtggctc 16895143

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>gb|AF322013.1|AF322012S2 Bradyrhizobium japonicum symbiotic gene region, part 2 of 2
          Length = 230573

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   ctcgcttgccacccagcagg 242
             ||||||||||||||||||||
Sbjct: 90145 ctcgcttgccacccagcagg 90164

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>ref|NM_207469.1| Homo sapiens defensin, beta 32 (UNQ827) (DEFB32) (DEFB32), mRNA
          Length = 2119

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 464 gactttcttagagctgcagt 483
           ||||||||||||||||||||
Sbjct: 774 gactttcttagagctgcagt 755

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>gb|AE010301.1| Leptospira interrogans serovar Lai str. 56601 chromosome II, complete
              sequence
          Length = 358943

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 172    ggtatcaatttggagatgaagttt 195
              ||||||||||| ||||||||||||
Sbjct: 311496 ggtatcaattttgagatgaagttt 311473

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>gb|AY099133.1| Cercomonas edax isolate pub5 polyubiquitin gene, partial cds
          Length = 532

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 400 tggtggctctggcatacagatctt 423
           ||||||||||||||| ||||||||
Sbjct: 202 tggtggctctggcatgcagatctt 225

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>gb|AY099132.1| Cercomonas edax isolate pub4 polyubiquitin gene, partial cds
          Length = 495

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 400 tggtggctctggcatacagatctt 423
           ||||||||||||||| ||||||||
Sbjct: 399 tggtggctctggcatgcagatctt 422

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>gb|AY099131.1| Cercomonas edax isolate pub3 polyubiquitin gene, partial cds
          Length = 448

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 400 tggtggctctggcatacagatctt 423
           ||||||||||||||| ||||||||
Sbjct: 352 tggtggctctggcatgcagatctt 375

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 223     ctcgcttgccacccagcagg 242
               ||||||||||||||||||||
Sbjct: 2148630 ctcgcttgccacccagcagg 2148649

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>dbj|AP001985.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-648J7, complete
             sequence
          Length = 161972

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 462   aggactttcttagagctgca 481
             ||||||||||||||||||||
Sbjct: 16660 aggactttcttagagctgca 16679

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>dbj|AP001001.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-677I18, complete
              sequence
          Length = 182429

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 462    aggactttcttagagctgca 481
              ||||||||||||||||||||
Sbjct: 174313 aggactttcttagagctgca 174332

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>dbj|AP000708.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-32L22, complete
            sequence
          Length = 127078

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 463  ggactttcttagagctgcag 482
            ||||||||||||||||||||
Sbjct: 4153 ggactttcttagagctgcag 4134

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>gb|AC102632.8| Mus musculus chromosome 5, clone RP23-286C5, complete sequence
          Length = 200020

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    ctcaagagcatctcctcctg 50
             ||||||||||||||||||||
Sbjct: 72000 ctcaagagcatctcctcctg 71981

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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 555    gaaacaggcagcagtttcag 574
              ||||||||||||||||||||
Sbjct: 955060 gaaacaggcagcagtttcag 955041

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>dbj|AP003069.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-417F7, complete
              sequence
          Length = 171976

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    ggactttcttagagctgcag 482
              ||||||||||||||||||||
Sbjct: 112616 ggactttcttagagctgcag 112597

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>gb|AE016824.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130,
              chromosome II, complete sequence
          Length = 350181

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 172    ggtatcaatttggagatgaagttt 195
              ||||||||||| ||||||||||||
Sbjct: 304593 ggtatcaattttgagatgaagttt 304570

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>emb|AL807741.8| Mouse DNA sequence from clone RP23-224B9 on chromosome 2, complete
              sequence
          Length = 165777

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 412    catacagatctttagatctt 431
              ||||||||||||||||||||
Sbjct: 101122 catacagatctttagatctt 101103

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 389      agcactgtatctggtggctc 408
                ||||||||||||||||||||
Sbjct: 16988895 agcactgtatctggtggctc 16988914

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 550     catgagaaacaggcagcagtttcaggaa 577
               ||||||||||||| |||| |||||||||
Sbjct: 8589747 catgagaaacagggagcattttcaggaa 8589720

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>emb|AL844877.2|CNS08CB0 Oryza sativa chromosome 12, . BAC OSJNBb0034B07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 125000

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 550   catgagaaacaggcagcagtttcaggaa 577
             ||||||||||||| |||| |||||||||
Sbjct: 52611 catgagaaacagggagcattttcaggaa 52584

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>gb|AC171898.2| Capitella capitata clone JGIBGZA-37B13, complete sequence
          Length = 32964

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 438   gctcaaagaagaaaatggagcttt 461
             ||||||||||||||||| ||||||
Sbjct: 26928 gctcaaagaagaaaatgaagcttt 26905

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>dbj|AB066295.1| Pseudomonas putida cyoA, cyoB, cyoC, cyoD, cyoE genes for cytochrome
            o oxidase A, cytochrome o oxidase B, cytochrome o oxidase
            C, cytochrome o oxidase D, cytochrome o oxidase E,
            complete cds
          Length = 5654

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 555  gaaacaggcagcagtttcag 574
            ||||||||||||||||||||
Sbjct: 5595 gaaacaggcagcagtttcag 5576


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,613,194
Number of Sequences: 3902068
Number of extensions: 5613194
Number of successful extensions: 111594
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111293
Number of HSP's gapped (non-prelim): 301
length of query: 578
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 555
effective length of database: 17,143,297,704
effective search space: 9514530225720
effective search space used: 9514530225720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result