ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd18h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC126795.4| Mus musculus BAC clone RP24-576D17 from chromosom... 44 0.60
2gb|AC164878.2| Mus musculus BAC clone RP23-364G24 from chromosom... 42 2.4
3gb|AC007640.13| Homo sapiens chromosome 11, clone RP11-89A1, com... 42 2.4
4gb|AC110263.9| Mus musculus chromosome 3, clone RP23-296I12, com... 42 2.4
5emb|AL935212.11| Human DNA sequence from clone RP11-160N1 on chr... 42 2.4
6gb|AC126398.5| Homo sapiens chromosome 11, clone CTD-2005G12, co... 42 2.4
7gb|AC139365.3| Homo sapiens chromosome 8, clone RP11-643N23, com... 42 2.4
8emb|AL731775.14| Mouse DNA sequence from clone RP23-151F3 on chr... 42 2.4
9ref|NM_196666.1| Oryza sativa (japonica cultivar-group) putative... 40 9.4
10gb|AC158767.3| Mus musculus chromosome 1, clone RP24-128E5, comp... 40 9.4
11gb|DQ481667.1| Takifugu rubripes HoxCa gene cluster, complete se... 40 9.4
12gb|AC104789.4| Homo sapiens BAC clone RP11-138B1 from 7, complet... 40 9.4
13gb|AC149306.9| Medicago truncatula clone mth2-88b8, complete seq... 40 9.4
14gb|AC130312.3| Homo sapiens chromosome 11, clone RP11-97G1, comp... 40 9.4
15emb|AL391121.29| Human DNA sequence from clone RP11-47A8 on chro... 40 9.4
16emb|AL357115.24| Human DNA sequence from clone RP11-102P23 on ch... 40 9.4
17emb|AL354829.8| Human DNA sequence from clone RP11-218B22 on chr... 40 9.4
18emb|AL137020.13| Human DNA sequence from clone RP11-146B14 on ch... 40 9.4
19gb|AE008770.1| Salmonella typhimurium LT2, section 74 of 220 of ... 40 9.4
20emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 40 9.4
21emb|AL139075.2|CJ11168X2 Campylobacter jejuni subsp. jejuni NCTC... 40 9.4
22emb|AL137465.1|HSM802181 Homo sapiens mRNA; cDNA DKFZp434E2022 (... 40 9.4
23emb|CR859889.1| Pongo pygmaeus mRNA; cDNA DKFZp469B2416 (from cl... 40 9.4
24gb|AC107971.8| Homo sapiens chromosome 11, clone CTD-2307F18, co... 40 9.4
25gb|AC008683.7| Homo sapiens chromosome 5 clone CTB-58D19, comple... 40 9.4
26dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 40 9.4
27gb|AC008692.6| Homo sapiens chromosome 5 clone CTB-65N22, comple... 40 9.4
28dbj|AK049031.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 40 9.4
29emb|AL112573.1|CNS01A79 Botrytis cinerea strain T4 cDNA library 40 9.4
30dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
31gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) ch... 40 9.4
32gb|AC125788.2| Homo sapiens chromosome 5 clone CTD-2169H20, comp... 40 9.4
33gb|AF159447.1|AF159447 Homo sapiens Suppressor of Fused mRNA, al... 40 9.4
34dbj|AK100938.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.4
35gb|AC117771.17| Mus musculus chromosome 1, clone RP24-512A5, com... 40 9.4
36ref|NM_016169.2| Homo sapiens suppressor of fused homolog (Droso... 40 9.4
37gb|AC153957.4| Mus musculus 10 BAC RP24-502B21 (Roswell Park Can... 40 9.4
38gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 9.4
39gb|AC172624.2| Rhesus Macaque BAC CH250-494G19 (Children's Hosp... 40 9.4
40gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.4
41gb|AC135469.4| Mus musculus BAC clone RP24-406G8 from 13, comple... 40 9.4
42gb|AC000127.1|HSAC000127 Human Cosmid g1572c198, complete sequence 40 9.4
43gb|AC125789.2| Homo sapiens chromosome 5 clone CTD-2262G7, compl... 40 9.4
44emb|AL671995.4| Mouse DNA sequence from clone RP23-109E24 on chr... 40 9.4 
>gb|AC126795.4| Mus musculus BAC clone RP24-576D17 from chromosome 19, complete
             sequence
          Length = 183031

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 194   ctctcttgagtttttggtctta 215
             ||||||||||||||||||||||
Sbjct: 59942 ctctcttgagtttttggtctta 59921
to top
>gb|AC164878.2| Mus musculus BAC clone RP23-364G24 from chromosome 13, complete sequence
          Length = 181893

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 195    tctcttgagtttttggtctta 215
              |||||||||||||||||||||
Sbjct: 142499 tctcttgagtttttggtctta 142479
to top
>gb|AC007640.13| Homo sapiens chromosome 11, clone RP11-89A1, complete sequence
          Length = 171722

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 120    tttagcagtttggaaaaactc 140
              |||||||||||||||||||||
Sbjct: 100390 tttagcagtttggaaaaactc 100370
to top
>gb|AC110263.9| Mus musculus chromosome 3, clone RP23-296I12, complete sequence
          Length = 201908

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 46     tgaagaagttgtgtttgattaagtt 70
              |||||||||||||||||||| ||||
Sbjct: 136400 tgaagaagttgtgtttgattcagtt 136376
to top
>emb|AL935212.11| Human DNA sequence from clone RP11-160N1 on chromosome 9 Contains eight
              novel pseudogenes, two novel genes and three CpG islands,
              complete sequence
          Length = 181647

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 120    tttagcagtttggaaaaactc 140
              |||||||||||||||||||||
Sbjct: 166872 tttagcagtttggaaaaactc 166892
to top
>gb|AC126398.5| Homo sapiens chromosome 11, clone CTD-2005G12, complete sequence
          Length = 137333

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 120   tttagcagtttggaaaaactc 140
             |||||||||||||||||||||
Sbjct: 89692 tttagcagtttggaaaaactc 89712
to top
>gb|AC139365.3| Homo sapiens chromosome 8, clone RP11-643N23, complete sequence
          Length = 185549

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 120   tttagcagtttggaaaaactc 140
             |||||||||||||||||||||
Sbjct: 37620 tttagcagtttggaaaaactc 37640
to top
>emb|AL731775.14| Mouse DNA sequence from clone RP23-151F3 on chromosome X, complete
             sequence
          Length = 130870

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 195   tctcttgagtttttggtctta 215
             |||||||||||||||||||||
Sbjct: 71940 tctcttgagtttttggtctta 71920
to top
>ref|NM_196666.1| Oryza sativa (japonica cultivar-group) putative potassium-dependent
            sodium-calcium exchanger (OSJNBb0040I11.2), mRNA
          Length = 1827

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 526  gtttgggctcctggccattt 545
            ||||||||||||||||||||
Sbjct: 1725 gtttgggctcctggccattt 1744
to top
>gb|AC158767.3| Mus musculus chromosome 1, clone RP24-128E5, complete sequence
          Length = 188758

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 181   tatggttttcggtctctcttgagttttt 208
             |||||| || ||||||||||||||||||
Sbjct: 93464 tatggtgttgggtctctcttgagttttt 93491
to top
>gb|DQ481667.1| Takifugu rubripes HoxCa gene cluster, complete sequence
          Length = 378763

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     aagaagttgtgtttgattaa 67
              ||||||||||||||||||||
Sbjct: 185283 aagaagttgtgtttgattaa 185264
to top
>gb|AC104789.4| Homo sapiens BAC clone RP11-138B1 from 7, complete sequence
          Length = 142048

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   tttagcagtttggaaaaact 139
             ||||||||||||||||||||
Sbjct: 72151 tttagcagtttggaaaaact 72170
to top
>gb|AC149306.9| Medicago truncatula clone mth2-88b8, complete sequence
          Length = 89880

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    caacttttcccaaatttgaa 49
             ||||||||||||||||||||
Sbjct: 30959 caacttttcccaaatttgaa 30940
to top
>gb|AC130312.3| Homo sapiens chromosome 11, clone RP11-97G1, complete sequence
          Length = 161367

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    tttagcagtttggaaaaact 139
              ||||||||||||||||||||
Sbjct: 104180 tttagcagtttggaaaaact 104161
to top
>emb|AL391121.29| Human DNA sequence from clone RP11-47A8 on chromosome 10 Contains the
             3' end of the SUFU gene for suppressor of fused homolog
             (Drosophila), the TRIM8 gene for tripartite
             motif-containing 8, the ARL3 gene for ADP-ribosylation
             factor-like 3, the SFXN2 gene for sideroflexin 2 and three
             CpG islands, complete sequence
          Length = 166600

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 604   agcaaaaccaaagtgaaaga 623
             ||||||||||||||||||||
Sbjct: 40599 agcaaaaccaaagtgaaaga 40580
to top
>emb|AL357115.24| Human DNA sequence from clone RP11-102P23 on chromosome Xq13.3-21.1
              Contains the 5' end of the NSBP1 gene for nucleosomal
              binding protein 1 and the SH3BGRL gene for SH3 domain
              binding glutamic acid-rich protein like, complete sequence
          Length = 164012

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 609    aaccaaagtgaaagacctct 628
              ||||||||||||||||||||
Sbjct: 157628 aaccaaagtgaaagacctct 157609
to top
>emb|AL354829.8| Human DNA sequence from clone RP11-218B22 on chromosome 13 Contains the
             3' end of the DIAPH3 gene for diaphanous homolog 3
             (Drosophila), complete sequence
          Length = 154212

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 610   accaaagtgaaagacctctt 629
             ||||||||||||||||||||
Sbjct: 38267 accaaagtgaaagacctctt 38248
to top
>emb|AL137020.13| Human DNA sequence from clone RP11-146B14 on chromosome 9 Contains part
              of the JMJD2C gene for jumonji domain containing 2C,
              complete sequence
          Length = 182231

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 406    aagagctagagatcaaaaat 425
              ||||||||||||||||||||
Sbjct: 177506 aagagctagagatcaaaaat 177487
to top
>gb|AE008770.1| Salmonella typhimurium LT2, section 74 of 220 of the complete genome
          Length = 21413

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   ggaaaatggataacctgaca 236
             ||||||||||||||||||||
Sbjct: 19313 ggaaaatggataacctgaca 19294
to top
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 78      ctggagatatgggcagaaaa 97
               ||||||||||||||||||||
Sbjct: 1384186 ctggagatatgggcagaaaa 1384167
to top
>emb|AL139075.2|CJ11168X2 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
             2/6
          Length = 308601

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 412   tagagatcaaaaattgccccaagc 435
             ||||||| ||||||||||||||||
Sbjct: 19959 tagagataaaaaattgccccaagc 19982
to top
>emb|AL137465.1|HSM802181 Homo sapiens mRNA; cDNA DKFZp434E2022 (from clone DKFZp434E2022);
            partial cds
          Length = 3483

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 604  agcaaaaccaaagtgaaaga 623
            ||||||||||||||||||||
Sbjct: 1228 agcaaaaccaaagtgaaaga 1209
to top
>emb|CR859889.1| Pongo pygmaeus mRNA; cDNA DKFZp469B2416 (from clone DKFZp469B2416)
          Length = 4243

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 604  agcaaaaccaaagtgaaaga 623
            ||||||||||||||||||||
Sbjct: 1917 agcaaaaccaaagtgaaaga 1898
to top
>gb|AC107971.8| Homo sapiens chromosome 11, clone CTD-2307F18, complete sequence
          Length = 119883

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    tttagcagtttggaaaaact 139
              ||||||||||||||||||||
Sbjct: 114673 tttagcagtttggaaaaact 114692



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   tttagcagtttggaaaaact 139
             ||||||||||||||||||||
Sbjct: 15446 tttagcagtttggaaaaact 15427
to top
>gb|AC008683.7| Homo sapiens chromosome 5 clone CTB-58D19, complete sequence
          Length = 114127

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     ttgtgtttgattaagttacc 73
              ||||||||||||||||||||
Sbjct: 105503 ttgtgtttgattaagttacc 105522
to top
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 308     gaagatgaggttgattgagttacc 331
               ||||||||||||||| ||||||||
Sbjct: 1793852 gaagatgaggttgatcgagttacc 1793875
to top
>gb|AC008692.6| Homo sapiens chromosome 5 clone CTB-65N22, complete sequence
          Length = 145807

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     ttgtgtttgattaagttacc 73
              ||||||||||||||||||||
Sbjct: 143152 ttgtgtttgattaagttacc 143133
to top
>dbj|AK049031.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:C230093G17
           product:unclassifiable, full insert sequence
          Length = 2272

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 181 tatggttttcggtctctcttgagttttt 208
           |||||| || ||||||||||||||||||
Sbjct: 969 tatggtgttgggtctctcttgagttttt 996
to top
>emb|AL112573.1|CNS01A79 Botrytis cinerea strain T4 cDNA library
          Length = 300

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 aggttgaagaagatgaggtt 319
           ||||||||||||||||||||
Sbjct: 178 aggttgaagaagatgaggtt 197
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 526      gtttgggctcctggccattt 545
                ||||||||||||||||||||
Sbjct: 15101773 gtttgggctcctggccattt 15101792
to top
>gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040I11,
             complete sequence
          Length = 129420

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 526   gtttgggctcctggccattt 545
             ||||||||||||||||||||
Sbjct: 10386 gtttgggctcctggccattt 10405
to top
>gb|AC125788.2| Homo sapiens chromosome 5 clone CTD-2169H20, complete sequence
          Length = 109999

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    tttagcagtttggaaaaact 139
              ||||||||||||||||||||
Sbjct: 100540 tttagcagtttggaaaaact 100521
to top
>gb|AF159447.1|AF159447 Homo sapiens Suppressor of Fused mRNA, alternatively spliced form 2,
            complete cds
          Length = 4898

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 604  agcaaaaccaaagtgaaaga 623
            ||||||||||||||||||||
Sbjct: 2695 agcaaaaccaaagtgaaaga 2676
to top
>dbj|AK100938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138B21, full
            insert sequence
          Length = 1896

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 526  gtttgggctcctggccattt 545
            ||||||||||||||||||||
Sbjct: 1733 gtttgggctcctggccattt 1752
to top
>gb|AC117771.17| Mus musculus chromosome 1, clone RP24-512A5, complete sequence
          Length = 161292

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 181    tatggttttcggtctctcttgagttttt 208
              |||||| || ||||||||||||||||||
Sbjct: 104383 tatggtgttgggtctctcttgagttttt 104356
to top
>ref|NM_016169.2| Homo sapiens suppressor of fused homolog (Drosophila) (SUFU), mRNA
          Length = 4898

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 604  agcaaaaccaaagtgaaaga 623
            ||||||||||||||||||||
Sbjct: 2695 agcaaaaccaaagtgaaaga 2676
to top
>gb|AC153957.4| Mus musculus 10 BAC RP24-502B21 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 182105

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 407   agagctagagatcaaaaatt 426
             ||||||||||||||||||||
Sbjct: 60294 agagctagagatcaaaaatt 60275
to top
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 217     ggaaaatggataacctgaca 236
               ||||||||||||||||||||
Sbjct: 1709368 ggaaaatggataacctgaca 1709349
to top
>gb|AC172624.2| Rhesus Macaque  BAC CH250-494G19 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 155349

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   agttgtgataacctggtaac 391
             ||||||||||||||||||||
Sbjct: 29434 agttgtgataacctggtaac 29415
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 526      gtttgggctcctggccattt 545
                ||||||||||||||||||||
Sbjct: 15110014 gtttgggctcctggccattt 15110033
to top
>gb|AC135469.4| Mus musculus BAC clone RP24-406G8 from 13, complete sequence
          Length = 165641

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 163   gcaagagtatacctgcagtatggt 186
             ||||||||||||||||||| ||||
Sbjct: 77627 gcaagagtatacctgcagtgtggt 77604
to top
>gb|AC000127.1|HSAC000127 Human Cosmid g1572c198, complete sequence
          Length = 41306

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   agttgtgataacctggtaac 391
             ||||||||||||||||||||
Sbjct: 10456 agttgtgataacctggtaac 10437
to top
>gb|AC125789.2| Homo sapiens chromosome 5 clone CTD-2262G7, complete sequence
          Length = 135052

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   tttagcagtttggaaaaact 139
             ||||||||||||||||||||
Sbjct: 40926 tttagcagtttggaaaaact 40907
to top
>emb|AL671995.4| Mouse DNA sequence from clone RP23-109E24 on chromosome X, complete
             sequence
          Length = 155349

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 609   aaccaaagtgaaagacctct 628
             ||||||||||||||||||||
Sbjct: 21292 aaccaaagtgaaagacctct 21311


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,094,449
Number of Sequences: 3902068
Number of extensions: 6094449
Number of successful extensions: 118014
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117547
Number of HSP's gapped (non-prelim): 467
length of query: 686
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 663
effective length of database: 17,143,297,704
effective search space: 11366006377752
effective search space used: 11366006377752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top