>VPS16_SCHPO (Q9UT38) Probable vacuolar protein sorting 16|
          Length = 835

 Score =  104 bits (260), Expect = 2e-22
 Identities = 69/224 (30%), Positives = 113/224 (50%), Gaps = 5/224 (2%)
 Frame = +3

Query: 42  GVADAVFWGGGVAILTEDNRVVVTTDIEVDDPHPRELADP--GVAEDEQVLCMAVVEPQF 215
           G+ +  F  GGV  L +++  +  T  E  +P  +  A       E   +   A++   F
Sbjct: 134 GIRECQFSEGGVFALLQNDTFISITGFE--EPWRKTYASIPFNTLEYYNIDSWALIPNPF 191

Query: 216 VMSGSPEVLLAVGDRVVAVDEDGVQVLGEALEIGPVQKMAVSPNGKLLAAFAHDGRLLVI 395
                 ++++ VG  ++ +DE   Q L     +  V  +++SPN + LA +   G++ VI
Sbjct: 192 SPDLGMDIVVTVGPHILQIDEQDSQ-LHSISSLQHVSHISISPNARYLALYESVGKVRVI 250

Query: 396 PTDFSRIIFEYECDSALPP---DQIAWCGLDSVLLYWSEVLLMVGPNGDPVQYNYDEPVM 566
            +DFS+ + +      +      Q+AWCG D+V+L    +L +VGP G  V Y Y+   +
Sbjct: 251 SSDFSKELLDLRLPETVAEASLKQMAWCGNDAVVLVHENLLTLVGPFGGSVPYLYNHTPI 310

Query: 567 LIPECDGVRILSNSSMEFLHRVPDSTTSIFGIGSMSPAALLYDA 698
           +  E DGVRIL+  S EFL +VP    +IF IGS +P A L +A
Sbjct: 311 VSTEVDGVRILTKDSSEFLRKVPAPLENIFHIGSKTPGAKLVEA 354

>VPS16_MOUSE (Q920Q4) Vacuolar protein sorting 16 (mVPS16)|
          Length = 839

 Score =  100 bits (250), Expect = 3e-21
 Identities = 74/222 (33%), Positives = 109/222 (49%), Gaps = 9/222 (4%)
 Frame = +3

Query: 63  WGGGVAILTEDNRVVVTTDIEVDDPHPRELAD-PGVAEDEQVLCMAVVEPQFVMSGSPEV 239
           +G GVAILT   R  ++ +  V D   R + + PG+       C   +    V    P +
Sbjct: 140 FGSGVAILTGAYRFTLSAN--VGDLKLRRMPEVPGMQSAPS--CWTTLCHDRV----PHI 191

Query: 240 LLAVGDRVVAVDE---DGVQVLGEALEIGPVQKMAVSPNGKLLAAFAHDGRLLVIPTDFS 410
           LLAVG  +  +D      V   G A  +    +MAVS   + LA F   G + +      
Sbjct: 192 LLAVGPDLYLLDHATCSAVTPAGLAPGVSSFLQMAVSFTYRYLALFTDTGYIWMGTASLK 251

Query: 411 RIIFEYECDSALPPDQIAWCGLD-----SVLLYWSEVLLMVGPNGDPVQYNYDEPVMLIP 575
             + E+ C+   PP Q+ WC        +V++ W   L++VG   + +Q+  DE   L+P
Sbjct: 252 EKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGNAPESIQFVLDEDSYLVP 311

Query: 576 ECDGVRILSNSSMEFLHRVPDSTTSIFGIGSMSPAALLYDAR 701
           E DGVRI S S+ EFLH VP ++  IF I SM+P ALL +A+
Sbjct: 312 ELDGVRIFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEAQ 353

>VPS16_HUMAN (Q9H269) Vacuolar protein sorting 16 (hVPS16)|
          Length = 839

 Score =  100 bits (249), Expect = 4e-21
 Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 12/225 (5%)
 Frame = +3

Query: 63  WGGGVAILTEDNRVVVTTDIEVDDPHPRELAD-PGVAEDEQ---VLCMAVVEPQFVMSGS 230
           +G GVAILT  +R  ++ +  V D   R + + PG+        VLC   V         
Sbjct: 140 FGSGVAILTGAHRFTLSAN--VGDLKLRRMPEVPGLQSAPSCWTVLCQDRVA-------- 189

Query: 231 PEVLLAVGDRVVAVDEDGVQVL---GEALEIGPVQKMAVSPNGKLLAAFAHDGRLLVIPT 401
             +LLAVG  +  +D      +   G A  +    +MAVS   + LA F   G + +   
Sbjct: 190 -HILLAVGPDLYLLDHAACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDTGYIWMGTA 248

Query: 402 DFSRIIFEYECDSALPPDQIAWCGLD-----SVLLYWSEVLLMVGPNGDPVQYNYDEPVM 566
                + E+ C+   PP Q+ WC        +V++ W   L++VG   + +Q+  DE   
Sbjct: 249 SLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESIQFVLDEDSY 308

Query: 567 LIPECDGVRILSNSSMEFLHRVPDSTTSIFGIGSMSPAALLYDAR 701
           L+PE DGVRI S S+ EFLH VP ++  IF I SM+P ALL +A+
Sbjct: 309 LVPELDGVRIFSRSTHEFLHEVPAASEEIFKIASMAPGALLLEAQ 353

>VPS16_YEAST (Q03308) Vacuolar protein sorting-associated protein VPS16|
          Length = 798

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
 Frame = +3

Query: 327 KMAVSPNGKLLAAFAHDGRLLVIPTDFSRIIFEYECDSALPPDQIAWCGLDSVLLYWSEV 506
           K+ +S  G +      D +L +   D +RI+ E+  DS   PD I WCG D+V   + + 
Sbjct: 194 KVTISSRGFICLYNMKDNKLQIF-RDPARILMEHNLDST--PDDICWCGNDTVACSFEDE 250

Query: 507 LLMVGPNGDPVQYNYDEPVM-LIPECDGVRILSNSSMEFLHRVPDSTTSIFGIGSMSPAA 683
           + + GP+G  V + Y   V  L  E DG+++++   + FL RV   T++IF IGS  P A
Sbjct: 251 IKLYGPDGLYVTFWYPFTVTNLRAEVDGLKVITTEKIYFLSRVQPQTSNIFRIGSTEPGA 310

Query: 684 LLYDA 698
           +L D+
Sbjct: 311 MLVDS 315

>WAPA_BACSU (Q07833) Wall-associated protein precursor|
          Length = 2334

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = +3

Query: 501  EVLLMVGPNGDPVQYNYDE---PVMLIPECDGVRILSNSSMEFLHRVPDSTTSIFGIG 665
            + LLM  PNG  VQY Y+E   P+ +I + +G++I +N+  E  + V D   +  G G
Sbjct: 1145 KTLLMTQPNGRKVQYGYNEAGNPIQVIDDAEGLKITTNTKYEGNNVVEDVDPNDVGTG 1202

>SELV_HUMAN (P59797) Selenoprotein V|
          Length = 346

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 348 RLVTPPFSARVQSPGPLRAPARHPRQLPLPDRQL 247
           RLV PP  A + +P P   P R+P  +P P R L
Sbjct: 83  RLVPPPAPAWIPTPVPTPVPVRNPTPVPTPARTL 116

>TAF5_HUMAN (Q15542) Transcription initiation factor TFIID subunit 5|
           (Transcription initiation factor TFIID 100 kDa subunit)
           (TAF(II)100) (TAFII-100) (TAFII100)
          Length = 800

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 315 GPVQKMAVSPNGKLLAAFAHDGRLLV 392
           GP+  +  SPNG+ LA  A DGR+L+
Sbjct: 670 GPIHSLTFSPNGRFLATGATDGRVLL 695

>ADCY7_HUMAN (P51828) Adenylate cyclase type 7 (EC 4.6.1.1) (Adenylate cyclase|
           type VII) (ATP pyrophosphate-lyase 7) (Adenylyl cyclase
           7)
          Length = 1080

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -1

Query: 538 TGSPLGPTIKSTSDQ*RSTLSNPHQAI*SGGNAESHSYSNMILEKSVGITSKRPSCANAA 359
           T  P G   KS   + R T   P +++   G +E  SY + +L    G++S RP C+ + 
Sbjct: 511 THVPNGRRPKSVPQRHRRT---PDRSMSPKGRSEDDSYDDEMLSAIEGLSSTRPCCSKSD 567

Query: 358 SSFPFG 341
             + FG
Sbjct: 568 DFYTFG 573

>SYFB_GEOKA (Q5KWE5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 804

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 7/126 (5%)
 Frame = +3

Query: 132 DPHPRE------LADPGVAEDEQVLCMAVVEPQFVMSGSPEVLLAVGDRVVAVDEDGVQV 293
           +PHP        L D G  E  Q++C           G+P V  A G +V AV + G  +
Sbjct: 55  EPHPNADKLRKCLVDLGEDEPVQIIC-----------GAPNV--AKGQKV-AVAKVGAVL 100

Query: 294 LGEALEIGPVQKMAVSPNGKLLAAFAHDGRLLVIPTDFSRIIFEYECDSALPPDQIAWCG 473
            G   +I   +      NG + +         V+P +++  IF +  D+ +  D I W G
Sbjct: 101 PGN-FKIKRAKLRGEESNGMICSLQELGVETKVVPKEYADGIFVFPSDAPIGADAIEWLG 159

Query: 474 L-DSVL 488
           L D VL
Sbjct: 160 LHDEVL 165

>TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subunit 5|
           (Transcription initiation factor TFIID 100 kDa subunit)
           (TAF(II)100) (TAFII-100) (TAFII100)
          Length = 801

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 315 GPVQKMAVSPNGKLLAAFAHDGRLLV 392
           GP+  +  SPNG+ LA  A DGR+L+
Sbjct: 671 GPIHSLTFSPNGRFLATGATDGRVLL 696

>RHO_THEMA (P38527) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 427

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 29/117 (24%), Positives = 47/117 (40%)
 Frame = +3

Query: 9   RGVPLLPPASGGVADAVFWGGGVAILTEDNRVVVTTDIEVDDPHPRELADPGVAEDEQVL 188
           RG+ + PP +G          G+A    +N       I + D  P E+ D   + +  V+
Sbjct: 177 RGMIVAPPKAGKTTILKEIANGIA----ENHPDTIRIILLIDERPEEVTDIRESTNAIVI 232

Query: 189 CMAVVEPQFVMSGSPEVLLAVGDRVVAVDEDGVQVLGEALEIGPVQKMAVSPNGKLL 359
                 P        E+ L +  R+V  + D V +L     +  V  + V P+GKLL
Sbjct: 233 AAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLL 289

>ATG21_PICAN (Q5QJC0) Autophagy-related protein 21|
          Length = 388

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
 Frame = +3

Query: 174 DEQVLCMAVVEPQFVM----SGSPEVLLAVGDRVVAVDEDGVQVLGEA-LEIGPVQKMAV 338
           D++++C    + + V+    SGS + L A    VV  D   +Q +        P+Q++AV
Sbjct: 130 DDRIICDLCADDESVLVFQQSGSSDELAANAGTVVVFDALQIQPINVIECHRSPLQRIAV 189

Query: 339 SPNGKLLAAFAHDGRLL 389
           S +G+LLA  +  G ++
Sbjct: 190 SKDGRLLATASVKGTIV 206

>TRI1_STRCO (Q9RDE2) Tricorn protease homolog 1 (EC 3.4.21.-)|
          Length = 1067

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +3

Query: 309 EIGPVQKMAVSPNGKLLAAFAHDGRLLVIPTDFSRI 416
           ++G V  +AV+P+G  +A  +HDGR+L++  +   +
Sbjct: 380 QLGRVLHLAVAPDGSRVAVASHDGRVLLVERESGEV 415

>PSAB_EUGGR (P19431) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)|
           (PSI-B)
          Length = 734

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
 Frame = +3

Query: 357 LAAFAHDGRLLVIPTDFSRIIFEYECDSALPPDQIAWCGLDSVLLYWSEVLLMVG-PNGD 533
           LA FA  G L + P    ++ +  + +S L     A  GL S  L WS  L+ V  P   
Sbjct: 148 LALFA--GWLHLEPKYSPKVSWFKDAESRLNHHLSALFGLSS--LAWSGHLIHVAIPESR 203

Query: 534 PVQYNYDEPVMLIPECDGVRILSNSSMEFLHRVPDSTTSIFGIGSMSPAALL 689
            +   +D  +  +P   G+      +       PDS T +FG  S +  A+L
Sbjct: 204 GIHVRWDNFLSQLPHPSGLEPFFKGNWSLYSENPDSLTHVFGTASGAGTAVL 255

>PMT2_SCHPO (O42832) AdoMet-dependent rRNA methyltransferase pmt2 (EC 2.1.1.-)|
           (2'-O-ribose RNA methyltransferase)
           (S-adenosyl-L-methionine-dependent methyltransferase)
          Length = 802

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = +3

Query: 81  ILTEDNRVVVTTDIEVDDPHPRELADPGVAEDEQVLCMAVVEPQFVMSGSPEVLLAVGDR 260
           +  E    V   D +V  P  R+ +  G A+D+  L   V+  +FV +  P  +L     
Sbjct: 217 VFEEVQEPVTNVDAKVFHPEKRKRSREGYADDDYTLHKTVLASEFVTANDPIQILGTSAE 276

Query: 261 VVAVDED 281
           +V   +D
Sbjct: 277 IVFPKDD 283

>DPO1_MYCLE (P46835) DNA polymerase I (EC 2.7.7.7) (POL I)|
          Length = 911

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 23/50 (46%), Positives = 25/50 (50%)
 Frame = +3

Query: 234 EVLLAVGDRVVAVDEDGVQVLGEALEIGPVQKMAVSPNGKLLAAFAHDGR 383
           E L A G+RV  VDE G  V G  LE G V        G+ LA  A DGR
Sbjct: 301 EALAAAGERVPEVDE-GFDVRGGLLESGTV--------GRWLAKHADDGR 341

>ZG29_XENLA (P18717) Gastrula zinc finger protein XLCGF29.1 (Fragment)|
          Length = 139

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = -3

Query: 389 EQAPIMCKRCKQLSVW*HRHFLHGSNLQGLSEHLHAILVNCHYPIANCKQNLWTPGHDEL 210
           E  P +C  C +   + H          GL+ HLH+  VN ++P + C++   +    ++
Sbjct: 58  EDRPFVCTVCGKTYKYKH----------GLNTHLHSHKVNTYFPCSECRKIFSSKASLDI 107

Query: 209 WLHH 198
            L H
Sbjct: 108 HLRH 111

>RADA_SYNY3 (P74391) DNA repair protein radA homolog (DNA repair protein sms|
           homolog)
          Length = 505

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
 Frame = +3

Query: 156 DPGVAEDEQVLCMAVVEPQFVMSGSPEVLLAVGDRVVAVDEDGVQVLGEALEIGPVQKMA 335
           DPG+ +   +L +A      + +  P +L       V+ +E G Q+   A  +G  Q + 
Sbjct: 108 DPGIGKSTLLLQVAFQ----LATRLPRILY------VSAEESGQQIKLRATRLGITQTVE 157

Query: 336 VSPNGKLLAAFAHDGRLLVIP-TDFSRIIFEYE 431
            S     +   AHDG L V+P T+   I+ E E
Sbjct: 158 PSQAQDGINNLAHDGNLFVLPETNLDDILRELE 190

>TAF5L_HUMAN (O75529) TAF5-like RNA polymerase II p300/CBP-associated|
           factor-associated factor 65 kDa subunit 5L
           (PCAF-associated factor 65 beta) (PAF65-beta)
          Length = 589

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 315 GPVQKMAVSPNGKLLAAFAHDGRL 386
           GPV  +A SPNGK LA+   D RL
Sbjct: 469 GPVLSLAFSPNGKYLASAGEDQRL 492

>TRI2_STRCO (Q9RKB9) Putative tricorn protease homolog 2 (EC 3.4.21.-)|
          Length = 1171

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +3

Query: 312 IGPVQKMAVSPNGKLLAAFAHDGRLLVIPT---DFSRIIFEYECDSALPPD 455
           +G V ++   P G  LA  +HDGRLL++     D    +     D+  PPD
Sbjct: 387 LGRVLELVSDPAGDRLAVASHDGRLLILDVAEPDTEVTLALEAVDAGYPPD 437

>ACCD_SPIOL (Q9M3L7) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           beta (EC 6.4.1.2) (ACCase beta chain)
          Length = 522

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = -1

Query: 526 LGPTIKSTSDQ*RSTLSNPHQAI*SGGNAESHSYSNM 416
           LGP I++TS +   +L++P + I S  N+ES SYSN+
Sbjct: 59  LGP-IENTSTKEDPSLNDPEKQIHSSRNSESSSYSNV 94

>PKWA_THECU (P49695) Probable serine/threonine-protein kinase pkwA (EC|
           2.7.11.1)
          Length = 742

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
 Frame = +3

Query: 111 TTDIEVDDPHPRELADPGVAEDEQVLCMAVVEP--QFVMSGSPEVLLAVGDRVVAVDEDG 284
           T   E  DPH  EL +P +   ++        P    +  GS + L+ V D  VA  ++ 
Sbjct: 439 TAPSESADPH--ELNEPRILTTDREAVAVAFSPGGSLLAGGSGDKLIHVWD--VASGDEL 494

Query: 285 VQVLGEALEIGPVQKMAVSPNGKLLAAFAHDG--RLLVIPTDFSRIIFE----YECDSAL 446
             + G       V+ +A SP+G LLA+ + D   RL  +     R +FE    Y  D A 
Sbjct: 495 HTLEGHT---DWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHTHYVLDIAF 551

Query: 447 PPD 455
            PD
Sbjct: 552 SPD 554


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,961,056
Number of Sequences: 219361
Number of extensions: 2381344
Number of successful extensions: 8137
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 7478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8113
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7026286028
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)