ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd18g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calciu... 35 0.18
2CYB_SACCA (Q8M354) Cytochrome b 33 0.91
3TRPD_METAC (Q8TLP5) Anthranilate phosphoribosyltransferase (EC 2... 32 1.2
4BAZ1B_MOUSE (Q9Z277) Bromodomain adjacent to zinc finger domain ... 32 1.6
5CYB_SCHJP (Q8HMZ7) Cytochrome b 32 1.6
6GSHB_NITEU (Q82V16) Glutathione synthetase (EC 6.3.2.3) (Glutath... 32 2.0
7PGFRB_CANFA (Q6QNF3) Beta platelet-derived growth factor recepto... 31 2.6
8CYBC_BRAJA (P51131) Cytochrome b/c1 [Contains: Cytochrome b; Cyt... 31 2.6
9STB3_YEAST (Q12427) Protein STB3 (SIN3-binding protein 3) 31 3.5
10BKRB1_RAT (P97583) B1 bradykinin receptor (BK-1 receptor) (B1R) ... 31 3.5
11BKRB1_MOUSE (Q61125) B1 bradykinin receptor (BK-1 receptor) (B1R) 31 3.5
12COBS_ECOLI (P36561) Cobalamin synthase (EC 2.-.-.-) 30 4.5
13COBS_ECOL6 (Q8FGA4) Cobalamin synthase (EC 2.-.-.-) 30 4.5
14PTSBC_KLEPN (P27219) PTS system sucrose-specific EIIBC component... 30 4.5
15Y3374_BACAN (Q81N43) UPF0078 membrane protein BA3374/GBAA3374/BA... 30 4.5
16CYB_CANPA (Q7GEV4) Cytochrome b 30 5.9
17NU5M_MYTED (Q00232) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 30 5.9
18CTL3_RAT (Q6AY92) Choline transporter-like protein 3 (Solute car... 30 5.9
19T2R14_PONPY (Q645V2) Taste receptor type 2 member 14 (T2R14) 30 5.9
20PGFRB_HUMAN (P09619) Beta platelet-derived growth factor recepto... 30 5.9
21YM8M_YEAST (Q03263) Hypothetical transport protein YMR279C 30 5.9
22ELOA3_HUMAN (Q8NG57) RNA polymerase II transcription factor SIII... 30 5.9
23CTL3_MOUSE (Q921V7) Choline transporter-like protein 3 (Solute c... 30 7.7
24OAT5_HUMAN (Q63ZE4) Solute carrier family 22 member 10 (Organic ... 30 7.7
25COBS_ECO57 (Q8X8U9) Cobalamin synthase (EC 2.-.-.-) 30 7.7
26CYB_YEAST (P00163) Cytochrome b 30 7.7
27CYB_SACDO (Q35819) Cytochrome b 30 7.7

>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 35.0 bits (79), Expect = 0.18
 Identities = 35/125 (28%), Positives = 42/125 (33%), Gaps = 5/125 (4%)
 Frame = -1

Query: 411 EDGGDHAEEAQHPDLRPALREDEEDHHVDGLDHRPRAVDRRHQDVVRGHERQPVPC---- 244
           +D GD  E   H   R    E+EED   D  +      DR      RGH  +        
Sbjct: 240 DDEGDSTESDHHQAHRHRGHEEEEDEEDDDDEGDSTESDRHQAHRHRGHREEEDEDDDDE 299

Query: 243 G*EAVEQRHVVW-HAGEVLRRLPLDDPPEGDHRRQEEEQSNNIARDPEEEPRDMLHLGAS 67
           G      RH    H G        DD  EGD    +  Q++      EEE  D    G S
Sbjct: 300 GDSTESDRHQAHRHRGHREEEDDDDDDDEGDSTESDRHQAHRHRGHREEEDEDDDDEGDS 359

Query: 66  TPRTR 52
           T   R
Sbjct: 360 TESDR 364



 Score = 30.4 bits (67), Expect = 4.5
 Identities = 31/120 (25%), Positives = 39/120 (32%), Gaps = 4/120 (3%)
 Frame = -1

Query: 411 EDGGDHAEEAQHPDLRPALREDEEDHHVDGLDHRPRAVDRRHQDVVRGHERQPVPC---- 244
           +D GD  E  +H   R     +EED   D  +      DR      RGH  +        
Sbjct: 297 DDEGDSTESDRHQAHRHRGHREEEDDDDDDDEGDSTESDRHQAHRHRGHREEEDEDDDDE 356

Query: 243 G*EAVEQRHVVWHAGEVLRRLPLDDPPEGDHRRQEEEQSNNIARDPEEEPRDMLHLGAST 64
           G      RH              DD  EGD    +  Q++      EEE  D    G ST
Sbjct: 357 GDSTESDRHQAHRHRGHREEEDEDDDDEGDSTESDRHQAHRHRGHREEEDEDDDDEGDST 416



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>CYB_SACCA (Q8M354) Cytochrome b|
          Length = 390

 Score = 32.7 bits (73), Expect = 0.91
 Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 5/146 (3%)
 Frame = +1

Query: 64  GRRAEMEHIARFFFGVSGNVIALFLFLSPVVTFWRIIKRKSTEDFSGVPYN-MTLLNCLL 240
           G    M+ +    + V  ++I +F+FL     F            + +P N M     ++
Sbjct: 211 GITGNMDRLPMHGYFVFKDLITVFVFLIVFSLFVFFSPNTMGHPDNYIPGNPMVTPASIV 270

Query: 241 SAWYGLPFVSPNNILVTTINGAGSVIEAIYVVIFLIFAERR----SKIRMLGLLSVVTAI 408
             WY LPF +    +   + G  ++  AI V++ L F +R     +  ++L  L     +
Sbjct: 271 PEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKVLSKLFFFLFV 330

Query: 409 FTTVVLVSLLALHGKGRTVFCGLAAT 486
           F  V+L  + A+H +   +  G  +T
Sbjct: 331 FNFVLLGQIGAVHVEVPYILMGQIST 356



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>TRPD_METAC (Q8TLP5) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)|
          Length = 370

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
 Frame = +1

Query: 82  EHIARFFFGV--SGNVIALFLFLSPVVTFWRIIKRKSTEDFSGVPYNMTLLNCLLSAWYG 255
           + IA F  G+  +GN I       PV  F R+I    T        N++    +++A  G
Sbjct: 53  QEIAGFVRGMKQAGNTI------KPVTPF-RVIDTCGTGGDGLNTINVSTAAAIVTAAAG 105

Query: 256 LPFVSPNNILVTTINGAGSVIEAIYVVIFLIFAERRSKIRMLGLLSVVTAIF 411
           +P     N   T+++G+  V+EA+ + + L   + R  I  +G+  +   +F
Sbjct: 106 VPVAKHGNRAATSMSGSSDVLEALGIKVDLTPGQVRKTIEKIGIGFMFAPVF 157



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>BAZ1B_MOUSE (Q9Z277) Bromodomain adjacent to zinc finger domain protein 1B|
            (Williams-Beuren syndrome chromosome region 9 protein
            homolog) (WBRS9)
          Length = 1479

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -1

Query: 414  GEDGGDHAEEAQHPDLRPALREDEEDHHVDGLDHRPRAVDRRHQDVV 274
            G++ G+  EE +  +      E+EED+ V GL  RPR   R  Q V+
Sbjct: 1256 GDESGEEEEEEEEEE------EEEEDYEVAGLRLRPRKTIRGKQSVI 1296



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>CYB_SCHJP (Q8HMZ7) Cytochrome b|
          Length = 389

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 4/146 (2%)
 Frame = +1

Query: 121 VIALFLFLSPVVTFWRIIKRKSTEDFSGVPYNMTLLNCLLSAWYGLPFVSPNNILVTTIN 300
           +   F+  S ++ ++  I   +       P    +   ++  WY LPF +    +   + 
Sbjct: 233 IFLFFIIFSIIIFYFPTILSDADNAVPADPMKTPM--SIVPEWYLLPFYAILRSIPNKLF 290

Query: 301 GAGSVIEAIYVVIFLIFAE----RRSKIRMLGLLSVVTAIFTTVVLVSLLALHGKGRTVF 468
           G  ++  AI+++ FL   +    R +K + +G L     I   ++L+ + A H +   V 
Sbjct: 291 GVIAMFFAIFILFFLPLLDFNYIRGNKFQPIGKLLFWCFISNFILLMFIGAKHVEIPYVA 350

Query: 469 CGLAATVFSICMYASPLSIMRLVIKT 546
            G  AT+F    +   + +  L+  T
Sbjct: 351 IGTYATLFYFAYFVFFIPLSSLISNT 376



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>GSHB_NITEU (Q82V16) Glutathione synthetase (EC 6.3.2.3) (Glutathione synthase)|
           (GSH synthetase) (GSH-S) (GSHase)
          Length = 320

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -1

Query: 231 VEQRHVVWHAGEVL---RRLPLDDPPEGDHRRQEE 136
           ++Q  + W   +V+   R L L DPPEGDHR  EE
Sbjct: 37  LQQNDLAWKDHQVIGFARPLTLLDPPEGDHRWYEE 71



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>PGFRB_CANFA (Q6QNF3) Beta platelet-derived growth factor receptor precursor (EC|
           2.7.10.1) (PDGF-R-beta)
          Length = 1103

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -1

Query: 258 QPVPCG*EAVEQRHVVWHAGEVLRRLPLDDPPE--GDHRRQEEEQSNNIARDPEEE 97
           Q V C    + Q H+ W     L+R P + PP   G+   +E +   N+   PE++
Sbjct: 432 QTVRCRGRGMPQPHLTWSTCSDLKRCPRELPPTPLGNSSEEESQLETNVTYWPEDQ 487



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>CYBC_BRAJA (P51131) Cytochrome b/c1 [Contains: Cytochrome b; Cytochrome c1]|
          Length = 687

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
 Frame = +1

Query: 235 LLSAWYGLPFVSPNNILVTTINGAGSVIEAIYVVIFLIFAE----RRSKIRMLGLLSVVT 402
           ++  WY LPF +    +   + G   +  AI ++ FL + +    R SK R L       
Sbjct: 285 IVPEWYYLPFYAILRSIPNKLAGVIGMFSAIIILCFLPWLDAAKTRSSKYRPLAKQFFWI 344

Query: 403 AIFTTVVLVSLLALHGKGRTVFCGLAATVFSICMYASPLSIMRLVIKTKSVEFMPFLLSL 582
            +   ++L  L A   +G  V   +A  V ++C +A  L ++ L+ + ++   +P  +S 
Sbjct: 345 FVAVCILLGYLGAQPPEGIYV---IAGRVLTVCYFAYFLIVLPLLSRIETPRPVPNSISE 401

Query: 583 SVFLCG 600
           ++   G
Sbjct: 402 AILAKG 407



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>STB3_YEAST (Q12427) Protein STB3 (SIN3-binding protein 3)|
          Length = 513

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -2

Query: 266 TNGNPYHADRRQLSSVMLYGTPEKSSVDFLLMILQKVTTGDRKRNRAITLPETP 105
           +NG+PY   RR+   V    TPE    +   +I QK+    R R R+   P TP
Sbjct: 242 SNGDPYSFGRRRSQVVFADSTPENIEHE---IIAQKIRPLLRNRRRSSIKPHTP 292



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>BKRB1_RAT (P97583) B1 bradykinin receptor (BK-1 receptor) (B1R) (Kinin B1|
           receptor) (KB1)
          Length = 337

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 11/105 (10%)
 Frame = +1

Query: 100 FFGVSGNVIALFLFLSPVVTFWRIIKRKSTEDFSGVPYNMTLLNCLLSAWYGLPFVSPN- 276
           FFG+ GN++ L  FL P   +W   +++         Y   L    L    GLPF + N 
Sbjct: 48  FFGLLGNLLVLSFFLLPWRQWWWQQRQRQQRLTIAEIYLANLAASDLVFVLGLPFWAENI 107

Query: 277 ---------NILVTTINGAGSVIEA-IYVVIFLIFAERRSKIRML 381
                      L   ++G   VI+A ++V IFL+ A  + + R+L
Sbjct: 108 GNRFNWPFGTDLCRVVSG---VIKANLFVSIFLVVAISQDRYRLL 149



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>BKRB1_MOUSE (Q61125) B1 bradykinin receptor (BK-1 receptor) (B1R)|
          Length = 334

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
 Frame = +1

Query: 100 FFGVSGNVIALFLFLSPVVTFWRIIKRKSTEDFSGVPYNMTLLNCLLSAWYGLPFVSPN- 276
           FFG+ GN++ L  FL P   +W+  +++ T       Y   L    L    GLPF + N 
Sbjct: 48  FFGLLGNLLVLSFFLLPWRRWWQQRRQRLT---IAEIYLANLAASDLVFVLGLPFWAENV 104

Query: 277 ---------NILVTTINGAGSVIEA-IYVVIFLIFAERRSKIRML 381
                    + L   ++G   VI+A +++ IFL+ A  + + R+L
Sbjct: 105 GNRFNWPFGSDLCRVVSG---VIKANLFISIFLVVAISQDRYRLL 146



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>COBS_ECOLI (P36561) Cobalamin synthase (EC 2.-.-.-)|
          Length = 247

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
 Frame = +1

Query: 223 LLNCLLSAWYGLPFVSPNNILVTTINGAGSVIEAIYVVIFLIFAERRSKIRML------- 381
           L+  +L AW G P  +  ++LV  +   G  ++ +      +F+  RS+ RML       
Sbjct: 50  LVFMVLQAWCGAPLAALFSVLVLVLMTGGFHLDGLADTCDGVFS-ARSRDRMLEIMRDSR 108

Query: 382 ----GLLSVVTAIFTTVVLVSLLALHGKGRTVFCGLAA 483
               G L+++  +   ++++S LAL  +G ++   LAA
Sbjct: 109 LGTHGGLALIFVVLAKILVLSELAL--RGESILASLAA 144



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>COBS_ECOL6 (Q8FGA4) Cobalamin synthase (EC 2.-.-.-)|
          Length = 247

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
 Frame = +1

Query: 223 LLNCLLSAWYGLPFVSPNNILVTTINGAGSVIEAIYVVIFLIFAERRSKIRML------- 381
           L+  +L AW G+P  +  ++LV  +   G  ++ +      +F+  RS+ RML       
Sbjct: 50  LVFMVLQAWCGVPLAALFSVLVLALMTGGFHLDGLADTCDGVFS-ARSRDRMLEIMRDSR 108

Query: 382 ----GLLSVVTAIFTTVVLVSLLALHGKGRTVFCGLAA 483
               G L+++  +   ++++S LAL  +G  +   LAA
Sbjct: 109 LGTHGGLALIFVVLAKILVLSELAL--RGEPILASLAA 144



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>PTSBC_KLEPN (P27219) PTS system sucrose-specific EIIBC component (EIIBC-Scr)|
           (EII-Scr) [Includes: Sucrose-specific phosphotransferase
           enzyme IIB component (EC 2.7.1.69) (PTS system
           sucrose-specific EIIB component); Sucrose permease IIC
           component (PTS sys
          Length = 456

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 12/144 (8%)
 Frame = +1

Query: 127 ALFLFLSPVVTFWRIIKRKSTEDFSGVPYNMTLLNCLLS------AW---YGLPFVSPNN 279
           A F+ L  ++ F       +  +F G PY    L  +L+      AW    G   ++   
Sbjct: 155 AAFIILPILIGF------TAAREFGGNPYLGATLGGILTHPALTNAWGVAAGFHTMNFFG 208

Query: 280 ILVTTINGAGSVIEAIYVVIFLIFAERRSKIRMLGLLSVVTAIFTTVVL---VSLLALHG 450
           I V  I   G+V   +  V F+   E+R +  +   L ++   F TV++   ++LL +  
Sbjct: 209 IEVAMIGYQGTVFPVLLAVWFMSMVEKRLRRVIPDALDLILTPFLTVIISGFIALLLIGP 268

Query: 451 KGRTVFCGLAATVFSICMYASPLS 522
            GR +  G++  + ++  +A  L+
Sbjct: 269 AGRALGDGISFILSTLISHAGWLA 292



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>Y3374_BACAN (Q81N43) UPF0078 membrane protein BA3374/GBAA3374/BAS3128|
          Length = 190

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
 Frame = +1

Query: 385 LLSVVTAIFTTVVLVSLLALHGKGRTVFCGL-----AATVFSICMYASPLSIM-RLVIKT 546
           LL ++ +     ++  LLA+ G   +VF         AT   + ++ SPL ++   V+  
Sbjct: 68  LLPLILSSTINPIVCGLLAILGHIFSVFASFKGGKAVATATGVFLFLSPLGVLVGFVVFV 127

Query: 547 KSVEFMPFLLSLSVFLCGTSWFIYGLL 627
            ++ F  ++ SLS  L G + FIY L+
Sbjct: 128 LTLLFTKYV-SLSSMLAGIALFIYSLI 153



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>CYB_CANPA (Q7GEV4) Cytochrome b|
          Length = 384

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
 Frame = +1

Query: 235 LLSAWYGLPFVSPNNILVTTINGAGSVIEAIYVVIFLIFAERR----SKIRMLGLLSVVT 402
           ++  WY LPF +    +   + G  ++  AI +++ L + +R     +  ++L       
Sbjct: 269 IVPEWYLLPFYAILRSIPDKLGGVIAMFGAILILLTLPYTDRSFIRGNSFKVLSKFMFFL 328

Query: 403 AIFTTVVLVSLLALHGKGRTVFCGLAATVFSICMY 507
            +F  ++L +L  LH +   +  G  AT F    Y
Sbjct: 329 FLFNFILLGNLGQLHVEVPYIELGQYATAFYFAYY 363



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>NU5M_MYTED (Q00232) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 568

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
 Frame = +1

Query: 373 RMLGL--LSVVTAIFTTVVLVSLLALHGKGRTVFCGLAATVFSICMYAS---PLSIMRLV 537
           R +GL  L V++ +F  +V   L+ L G     + GL  T F +  Y      LS   L 
Sbjct: 84  RFMGLVWLFVLSMVFMILVPNLLMLLIG-----WDGLGLTSFLLVAYYQNNKSLSAAMLT 138

Query: 538 IKTKSVEFMPFLLSLSVFLCGTSWFIY 618
             T  +  +  L+S+S+FL    W IY
Sbjct: 139 ALTNRIGDVLVLISISIFLSEGGWLIY 165



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>CTL3_RAT (Q6AY92) Choline transporter-like protein 3 (Solute carrier family|
           44 member 3)
          Length = 604

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
 Frame = +1

Query: 403 AIFTTVVLVSLLALHGKGRTVFCGLAA---TVFSICMYASPLSIMRLV----IKTKSVEF 561
           ++F +V+L    ALH     +  G+ A   T+  +C +   LS+  L     I T  V  
Sbjct: 140 SLFASVLLNDADALH----RILSGIMAGRDTILGLCAFVFALSLAMLFTFRFISTLLVHI 195

Query: 562 MPFLLSLSV-FLCGTSWFIY 618
           +  L+ L + F+CG  W++Y
Sbjct: 196 IISLVILGLLFVCGVFWWLY 215



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>T2R14_PONPY (Q645V2) Taste receptor type 2 member 14 (T2R14)|
          Length = 318

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
 Frame = +1

Query: 337 IFLIFAERRSKIRMLGLLSVVTAIFTTVVLVSL---LALHGKGRTVFCGLAATVFSICMY 507
           IF+    R  K+ ++ LL     +F  + L+++    +++G G    C   +  F+    
Sbjct: 118 IFIYLKWRVKKVVLVLLLVTSVFLFLNIALINIHINASINGYGGNKTCSSDSNDFT---- 173

Query: 508 ASPLSIMRLVIKTKSVE-FMPFLLSLSVFL 594
                   L+  T SV  F+PF+LSL++FL
Sbjct: 174 ----RFSSLIALTSSVFIFIPFILSLAIFL 199



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>PGFRB_HUMAN (P09619) Beta platelet-derived growth factor receptor precursor (EC|
           2.7.10.1) (PDGF-R-beta) (CD140b antigen)
          Length = 1106

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -1

Query: 258 QPVPCG*EAVEQRHVVWHAGEVLRRLPLDDPPE--GDHRRQEEEQSNNIARDPEEE 97
           Q V C    + Q +++W A   L+R P + PP   G+   +E +   N+    EE+
Sbjct: 432 QTVRCRGRGMPQPNIIWSACRDLKRCPRELPPTLLGNSSEEESQLETNVTYWEEEQ 487



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>YM8M_YEAST (Q03263) Hypothetical transport protein YMR279C|
          Length = 540

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = +1

Query: 235 LLSAWYGLPFVSPNNILVTTINGAGSVIEAIYVVIFLIFAERRSKIRMLGLLSVVTAIFT 414
           LL AWY +P   P NI   +++  GS +  I +++F     +   +       +V  I +
Sbjct: 246 LLMAWYSIPNNVPTNIHGLSMDWTGSALAIIGLILFNFVWNQAPIVGWDKPYIIVLLIIS 305

Query: 415 TVVLVSLLALHGK 453
            + LV+      K
Sbjct: 306 VIFLVAFFVYESK 318



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>ELOA3_HUMAN (Q8NG57) RNA polymerase II transcription factor SIII subunit A3|
           (Elongin A3) (EloA3) (Transcription elongation factor B
           polypeptide 3C)
          Length = 546

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 377 IRILDLRSAKMRKITT*MASITDPAPLIVVTRML-FGDTNGNPYHADRRQLSS 222
           +R+ D R  ++R +TT + S  +  P    T+M+ F      PY A RRQ  S
Sbjct: 417 LRLRDAREQRLRVVTTKIRSARENKPSGRQTKMICFNSVAKTPYDASRRQEKS 469



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>CTL3_MOUSE (Q921V7) Choline transporter-like protein 3 (Solute carrier family|
           44 member 3)
          Length = 652

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
 Frame = +1

Query: 403 AIFTTVVLVSLLALHGKGRTVFCGLAA---TVFSICMYASPLSIMRLV----IKTKSVEF 561
           ++F +V++    ALH     +  G+ A   T+  +C++   LS+  L     I T  +  
Sbjct: 187 SLFASVLINDADALH----RILSGIMAGRDTILGLCVFTFALSLAMLFAFRFISTLLIHI 242

Query: 562 MPFLLSLSV-FLCGTSWFIY 618
           +  L+ L + F+CG  W++Y
Sbjct: 243 IISLVILGLLFVCGVLWWLY 262



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>OAT5_HUMAN (Q63ZE4) Solute carrier family 22 member 10 (Organic anion|
           transporter 5)
          Length = 531

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 12/152 (7%)
 Frame = +1

Query: 205 VPYNMTLLNCLLSAWYGLPFVSPNNILVTTINGAGSVIEAIYVVIFLIFAERR-SKIRML 381
           +P+  T++N        L  V  N  L+  + GA ++I     ++ L    RR S+I  +
Sbjct: 361 IPFYGTMVN--------LQHVGSNIFLLQVLYGAVALIVRCLALLTLNHMGRRISQILFM 412

Query: 382 GL--LSVVTAIFTTVVLVSLLALHGKGRTVFCGLAATVFSICMYASPLSIMRLVIKTKSV 555
            L  LS++   F   +    +AL   G  + C  AAT  S+ ++   L    L  +   +
Sbjct: 413 FLVGLSILANTFVPKMQTLRVALACLG--IGCS-AATFSSVAVHFIELIPTVLRARASGI 469

Query: 556 EFM---------PFLLSLSVFLCGTSWFIYGL 624
           +           P L++L+VF     W IYG+
Sbjct: 470 DLTASRIGAALAPLLMTLTVFFTTLPWIIYGI 501



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>COBS_ECO57 (Q8X8U9) Cobalamin synthase (EC 2.-.-.-)|
          Length = 247

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
 Frame = +1

Query: 223 LLNCLLSAWYGLPFVSPNNILVTTINGAGSVIEAIYVVIFLIFAERRSKIRML------- 381
           L+  +L AW G P  +  ++LV  +   G  ++ +      +F+  RS+ RML       
Sbjct: 50  LVFMVLQAWCGAPLAALFSVLVLVLMTGGFHLDGLADTCDGVFS-ARSRDRMLEIMRDSR 108

Query: 382 ----GLLSVVTAIFTTVVLVSLLALHGKGRTVFCGLAA 483
               G L+++  +   ++++S LAL  +G  +   LAA
Sbjct: 109 LGTHGGLALIFVVLAKILVLSELAL--RGEPILASLAA 144



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>CYB_YEAST (P00163) Cytochrome b|
          Length = 385

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 5/146 (3%)
 Frame = +1

Query: 64  GRRAEMEHIARFFFGVSGNVIALFLFLSPVVTFWRIIKRKSTEDFSGVPYNMTLLNC-LL 240
           G    ++ I    + +  +++ +FLF+  +  F            + +P N  +    ++
Sbjct: 211 GITGNLDRIPMHSYFIFKDLVTVFLFMLILALFVFYSPNTLGHPDNYIPGNPLVTPASIV 270

Query: 241 SAWYGLPFVSPNNILVTTINGAGSVIEAIYVVIFLIFAERR----SKIRMLGLLSVVTAI 408
             WY LPF +    +   + G  ++  AI V++ L F +R     +  ++L        +
Sbjct: 271 PEWYLLPFYAILRSIPDKLLGVITMFAAILVLLVLPFTDRSVVRGNTFKVLSKFFFFIFV 330

Query: 409 FTTVVLVSLLALHGKGRTVFCGLAAT 486
           F  V+L  + A H +   V  G  AT
Sbjct: 331 FNFVLLGQIGACHVEVPYVLMGQIAT 356



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>CYB_SACDO (Q35819) Cytochrome b|
          Length = 385

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 5/146 (3%)
 Frame = +1

Query: 64  GRRAEMEHIARFFFGVSGNVIALFLFLSPVVTFWRIIKRKSTEDFSGVPYNMTLLNC-LL 240
           G    ++ I    + +  +++ +FLF+  +  F            + +P N  +    ++
Sbjct: 211 GITGNLDRIPMHSYFIFKDLVTVFLFMLILALFVFYSPNTLGHPDNYIPGNPLVTPASIV 270

Query: 241 SAWYGLPFVSPNNILVTTINGAGSVIEAIYVVIFLIFAERR----SKIRMLGLLSVVTAI 408
             WY LPF +    +   + G  ++  AI V++ L F +R     +  ++L        +
Sbjct: 271 PEWYLLPFYAILRSIPDKLLGVITMFAAILVLLVLPFTDRSVVRGNTFKVLSKFFFFIFV 330

Query: 409 FTTVVLVSLLALHGKGRTVFCGLAAT 486
           F  V+L  + A H +   V  G  AT
Sbjct: 331 FNFVLLGQIGACHVEVPYVLMGQIAT 356


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,047,025
Number of Sequences: 219361
Number of extensions: 1389588
Number of successful extensions: 5739
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 5401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5704
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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