ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd18g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_185191.1| Oryza sativa (japonica cultivar-group), mRNA 194 2e-46
2dbj|AK065662.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 143 7e-31
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 143 7e-31
5gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genom... 143 7e-31
6ref|NM_185189.1| Oryza sativa (japonica cultivar-group), mRNA 54 5e-04
7dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
8dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
9ref|XM_483431.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.50
10emb|BX927157.1| Corynebacterium glutamicum ATCC 13032, IS finger... 44 0.50
11dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
12dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 44 0.50
13dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
14dbj|AP003857.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
15dbj|AK120803.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.50
16ref|XM_526821.1| PREDICTED: Pan troglodytes similar to E2 chorio... 42 2.0
17gb|AC099020.2| Drosophila melanogaster clone BACR30H01, complete... 42 2.0
18gb|AC099017.1| Drosophila melanogaster, chromosome 2L, region 37... 42 2.0
19gb|AC116351.2| Homo sapiens chromosome 5 clone RP11-43F13, compl... 42 2.0
20gb|AE003663.4| Drosophila melanogaster chromosome 2L, section 72... 42 2.0
21gb|AC005128.1|AC005128 Drosophila melanogaster, chromosome 2L, r... 42 2.0
22gb|AC114581.8| Mus musculus chromosome 8, clone RP23-170M20, com... 42 2.0
23gb|AC155316.6| Mus musculus BAC clone RP23-181P9 from chromosome... 42 2.0
24dbj|AP006143.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 2.0
25gb|AC119202.6| Mus musculus chromosome 8, clone RP24-185N3, comp... 42 2.0
26gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 7.8
27gb|DQ160112.1| Taraxacum officinale TO72-1rc (To72-1rc) mRNA, pa... 40 7.8
28ref|XM_570880.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 7.8
29gb|AC004685.1|HUAC004685 Homo sapiens Chromosome 16 BAC clone CI... 40 7.8
30emb|Z97832.11|HS329A5 Human DNA sequence from clone RP3-329A5 on... 40 7.8
31emb|AL499604.9| Human DNA sequence from clone RP11-23B15 on chro... 40 7.8
32emb|AL356056.22| Human DNA sequence from clone RP11-38L15 on chr... 40 7.8
33emb|AL035588.21|HS696P19 Human DNA sequence from clone RP4-696P1... 40 7.8
34gb|AC096310.9| Rattus norvegicus 1 BAC CH230-121B19 (Children's ... 40 7.8
35dbj|AB038972.2| Homo sapiens CFLAR gene, complete cds 40 7.8
36gb|AC048352.18| Homo sapiens 12 BAC RP11-871F6 (Roswell Park Can... 40 7.8
37gb|AC007283.3| Homo sapiens BAC clone RP11-536I18 from 2, comple... 40 7.8
38emb|BX088539.6| Mouse DNA sequence from clone RP23-152D15 on chr... 40 7.8

>ref|NM_185191.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1160

 Score =  194 bits (98), Expect = 2e-46
 Identities = 152/170 (89%)
 Strand = Plus / Plus

                                                                       
Query: 232 tctgctcccaccacacctggaaggtccaagatgagaccaaccggccgcggcgatgaaacg 291
           ||||||||||| |||||||||||||||||| | ||| |||| ||||| || ||||| |||
Sbjct: 615 tctgctcccactacacctggaaggtccaagttcagatcaactggccgtggtgatgagacg 674

                                                                       
Query: 292 ccagagagaggatcggctgtgccaaagtttggagactgggatgagaaggatccttcgact 351
           || || |||||||| || ||||||||||||||||| ||||||||||| |||||||| || 
Sbjct: 675 cctgatagaggatcagccgtgccaaagtttggagaatgggatgagaaagatccttctaca 734

                                                             
Query: 352 ggtgaaggtttcactgacatatttgaaaaggtgagggaggagaagcagtc 401
           |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 735 ggtgaaggtttcactgacatatttgagaaggtgagggaggagaaacagtc 784



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 462 atatgaatcttcgggctgctcatgcttcagctggttcaagaa 503
           |||||||||  | ||||||||||||||||| |||||||||||
Sbjct: 851 atatgaatccacaggctgctcatgcttcagttggttcaagaa 892



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>dbj|AK065662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041L20, full
           insert sequence
          Length = 1131

 Score =  194 bits (98), Expect = 2e-46
 Identities = 152/170 (89%)
 Strand = Plus / Plus

                                                                       
Query: 232 tctgctcccaccacacctggaaggtccaagatgagaccaaccggccgcggcgatgaaacg 291
           ||||||||||| |||||||||||||||||| | ||| |||| ||||| || ||||| |||
Sbjct: 643 tctgctcccactacacctggaaggtccaagttcagatcaactggccgtggtgatgagacg 702

                                                                       
Query: 292 ccagagagaggatcggctgtgccaaagtttggagactgggatgagaaggatccttcgact 351
           || || |||||||| || ||||||||||||||||| ||||||||||| |||||||| || 
Sbjct: 703 cctgatagaggatcagccgtgccaaagtttggagaatgggatgagaaagatccttctaca 762

                                                             
Query: 352 ggtgaaggtttcactgacatatttgaaaaggtgagggaggagaagcagtc 401
           |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 763 ggtgaaggtttcactgacatatttgagaaggtgagggaggagaaacagtc 812



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 462 atatgaatcttcgggctgctcatgcttcagctggttcaagaa 503
           |||||||||  | ||||||||||||||||| |||||||||||
Sbjct: 879 atatgaatccacaggctgctcatgcttcagttggttcaagaa 920



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  143 bits (72), Expect = 7e-31
 Identities = 96/104 (92%)
 Strand = Plus / Plus

                                                                            
Query: 298      agaggatcggctgtgccaaagtttggagactgggatgagaaggatccttcgactggtgaa 357
                |||||||| || ||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct: 35387508 agaggatcagccgtgccaaagtttggagaatgggatgagaaagatccttctacaggtgaa 35387567

                                                            
Query: 358      ggtttcactgacatatttgaaaaggtgagggaggagaagcagtc 401
                |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 35387568 ggtttcactgacatatttgagaaggtgagggaggagaaacagtc 35387611



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                        
Query: 232      tctgctcccaccacacctggaaggtccaagatgagaccaaccggccgcggcgatga 287
                ||||||||||| |||||||||||||||||| | ||| |||| ||||| || |||||
Sbjct: 35400125 tctgctcccactacacctggaaggtccaagttcagatcaactggccgtggtgatga 35400180



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                        
Query: 232      tctgctcccaccacacctggaaggtccaagatgagaccaaccggccgcggcgatga 287
                ||||||||||| |||||||||||||||||| | ||| |||| ||||| || |||||
Sbjct: 35387343 tctgctcccactacacctggaaggtccaagttcagatcaactggccgtggtgatga 35387398



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                              
Query: 474      gggctgctcatgcttcagctggttcaagaa 503
                |||||||||||||||||| |||||||||||
Sbjct: 35388170 gggctgctcatgcttcagttggttcaagaa 35388199



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  143 bits (72), Expect = 7e-31
 Identities = 96/104 (92%)
 Strand = Plus / Plus

                                                                            
Query: 298      agaggatcggctgtgccaaagtttggagactgggatgagaaggatccttcgactggtgaa 357
                |||||||| || ||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct: 35477580 agaggatcagccgtgccaaagtttggagaatgggatgagaaagatccttctacaggtgaa 35477639

                                                            
Query: 358      ggtttcactgacatatttgaaaaggtgagggaggagaagcagtc 401
                |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 35477640 ggtttcactgacatatttgagaaggtgagggaggagaaacagtc 35477683



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                        
Query: 232      tctgctcccaccacacctggaaggtccaagatgagaccaaccggccgcggcgatga 287
                ||||||||||| |||||||||||||||||| | ||| |||| ||||| || |||||
Sbjct: 35490197 tctgctcccactacacctggaaggtccaagttcagatcaactggccgtggtgatga 35490252



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                        
Query: 232      tctgctcccaccacacctggaaggtccaagatgagaccaaccggccgcggcgatga 287
                ||||||||||| |||||||||||||||||| | ||| |||| ||||| || |||||
Sbjct: 35477415 tctgctcccactacacctggaaggtccaagttcagatcaactggccgtggtgatga 35477470



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                              
Query: 474      gggctgctcatgcttcagctggttcaagaa 503
                |||||||||||||||||| |||||||||||
Sbjct: 35478242 gggctgctcatgcttcagttggttcaagaa 35478271



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>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete
              sequence
          Length = 133846

 Score =  143 bits (72), Expect = 7e-31
 Identities = 96/104 (92%)
 Strand = Plus / Minus

                                                                          
Query: 298    agaggatcggctgtgccaaagtttggagactgggatgagaaggatccttcgactggtgaa 357
              |||||||| || ||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct: 100118 agaggatcagccgtgccaaagtttggagaatgggatgagaaagatccttctacaggtgaa 100059

                                                          
Query: 358    ggtttcactgacatatttgaaaaggtgagggaggagaagcagtc 401
              |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 100058 ggtttcactgacatatttgagaaggtgagggaggagaaacagtc 100015



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                      
Query: 232    tctgctcccaccacacctggaaggtccaagatgagaccaaccggccgcggcgatga 287
              ||||||||||| |||||||||||||||||| | ||| |||| ||||| || |||||
Sbjct: 100283 tctgctcccactacacctggaaggtccaagttcagatcaactggccgtggtgatga 100228



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                     
Query: 232   tctgctcccaccacacctggaaggtccaagatgagaccaaccggccgcggcgatga 287
             ||||||||||| |||||||||||||||||| | ||| |||| ||||| || |||||
Sbjct: 87501 tctgctcccactacacctggaaggtccaagttcagatcaactggccgtggtgatga 87446



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 474   gggctgctcatgcttcagctggttcaagaa 503
             |||||||||||||||||| |||||||||||
Sbjct: 99456 gggctgctcatgcttcagttggttcaagaa 99427



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>ref|NM_185189.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 477

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 232 tctgctcccaccacacctggaaggtccaagatgagaccaaccggccg 278
           ||||||||||| |||||||||||||||||| | ||| |||| |||||
Sbjct: 425 tctgctcccactacacctggaaggtccaagttcagatcaactggccg 471



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 121      gacggcgctgcgaggaaagcaggca 145
                |||||||||||||||||||||||||
Sbjct: 13157536 gacggcgctgcgaggaaagcaggca 13157560



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>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0048A13
          Length = 137680

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 121   gacggcgctgcgaggaaagcaggca 145
             |||||||||||||||||||||||||
Sbjct: 79626 gacggcgctgcgaggaaagcaggca 79650



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>ref|XM_483431.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1350

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 379 aaggtgagggaggagaagcagtccgg 404
           ||||||||||||||||||||| ||||
Sbjct: 598 aaggtgagggaggagaagcagaccgg 623



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>emb|BX927157.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5,
            complete genome; segment 10/10
          Length = 140057

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 348  gactggtgaaggtttcactgac 369
            ||||||||||||||||||||||
Sbjct: 9456 gactggtgaaggtttcactgac 9477



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 379      aaggtgagggaggagaagcagtccgg 404
                ||||||||||||||||||||| ||||
Sbjct: 26186256 aaggtgagggaggagaagcagaccgg 26186231



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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 348     gactggtgaaggtttcactgac 369
               ||||||||||||||||||||||
Sbjct: 3178801 gactggtgaaggtttcactgac 3178822



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>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1191_A10
          Length = 140643

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 379    aaggtgagggaggagaagcagtccgg 404
              ||||||||||||||||||||| ||||
Sbjct: 130187 aaggtgagggaggagaagcagaccgg 130162



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>dbj|AP003857.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1014_E06
          Length = 112241

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 379   aaggtgagggaggagaagcagtccgg 404
             ||||||||||||||||||||| ||||
Sbjct: 19181 aaggtgagggaggagaagcagaccgg 19156



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>dbj|AK120803.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013B14, full
           insert sequence
          Length = 1283

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 379 aaggtgagggaggagaagcagtccgg 404
           ||||||||||||||||||||| ||||
Sbjct: 792 aaggtgagggaggagaagcagaccgg 817



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>ref|XM_526821.1| PREDICTED: Pan troglodytes similar to E2 chorion precursor protein
            (LOC471441), mRNA
          Length = 2043

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 231  ctctgctcccaccacacctgg 251
            |||||||||||||||||||||
Sbjct: 1604 ctctgctcccaccacacctgg 1624



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>gb|AC099020.2| Drosophila melanogaster clone BACR30H01, complete sequence
          Length = 155557

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 543    gtatctttgtgaaatgagtag 563
              |||||||||||||||||||||
Sbjct: 125146 gtatctttgtgaaatgagtag 125166



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>gb|AC099017.1| Drosophila melanogaster, chromosome 2L, region 37D-37E, BAC clone
              BACR27M12, complete sequence
          Length = 157766

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 543    gtatctttgtgaaatgagtag 563
              |||||||||||||||||||||
Sbjct: 145813 gtatctttgtgaaatgagtag 145793



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>gb|AC116351.2| Homo sapiens chromosome 5 clone RP11-43F13, complete sequence
          Length = 187289

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 231   ctctgctcccaccacacctgg 251
             |||||||||||||||||||||
Sbjct: 41226 ctctgctcccaccacacctgg 41206



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>gb|AE003663.4| Drosophila melanogaster chromosome 2L, section 72 of 83 of the complete
              sequence
          Length = 290667

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 543    gtatctttgtgaaatgagtag 563
              |||||||||||||||||||||
Sbjct: 117432 gtatctttgtgaaatgagtag 117412



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>gb|AC005128.1|AC005128 Drosophila melanogaster, chromosome 2L, region 37F1-37F6, P1 clone
             DS08491, complete sequence
          Length = 60040

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 543   gtatctttgtgaaatgagtag 563
             |||||||||||||||||||||
Sbjct: 30459 gtatctttgtgaaatgagtag 30479



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>gb|AC114581.8| Mus musculus chromosome 8, clone RP23-170M20, complete sequence
          Length = 197312

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 307   gctgtgccaaagtttggagac 327
             |||||||||||||||||||||
Sbjct: 50308 gctgtgccaaagtttggagac 50288



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>gb|AC155316.6| Mus musculus BAC clone RP23-181P9 from chromosome 5, complete sequence
          Length = 204809

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 136    aaagcaggcaatgagaggtca 156
              |||||||||||||||||||||
Sbjct: 127181 aaagcaggcaatgagaggtca 127201



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>dbj|AP006143.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16L07, TM0254,
             complete sequence
          Length = 118592

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 377   aaaaggtgagggaggagaagc 397
             |||||||||||||||||||||
Sbjct: 87338 aaaaggtgagggaggagaagc 87358



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>gb|AC119202.6| Mus musculus chromosome 8, clone RP24-185N3, complete sequence
          Length = 159765

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 307    gctgtgccaaagtttggagac 327
              |||||||||||||||||||||
Sbjct: 155946 gctgtgccaaagtttggagac 155926



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>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete
              sequence
          Length = 1507550

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 317    agtttggagactgggatgagaagg 340
              |||| |||||||||||||||||||
Sbjct: 920722 agttgggagactgggatgagaagg 920699



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>gb|DQ160112.1| Taraxacum officinale TO72-1rc (To72-1rc) mRNA, partial cds
          Length = 350

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 311 tgccaaagtttggagactgggatg 334
           ||||||||||||| ||||||||||
Sbjct: 65  tgccaaagtttggtgactgggatg 88



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>ref|XM_570880.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNE03230) partial mRNA
          Length = 3156

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 317 agtttggagactgggatgagaagg 340
           |||| |||||||||||||||||||
Sbjct: 516 agttgggagactgggatgagaagg 539



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>gb|AC004685.1|HUAC004685 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-233A8, complete
             sequence
          Length = 112235

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 227   ggggctctgctcccaccacacctg 250
             ||||||||| ||||||||||||||
Sbjct: 47477 ggggctctgttcccaccacacctg 47454



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>emb|Z97832.11|HS329A5 Human DNA sequence from clone RP3-329A5 on chromosome 6p21.1-21.33
             Contains the gene for a novel EGF-like and CUB domain
             protein similar to mouse CUB domain EGF-like signal
             peptide 1 (Scube1) and mouse and human CEGP1, the ZNF76
             gene for zinc finger protein 76 (expressed in testis), the
             DEF6 gene for differentially expressed in FDCP 6 homolog
             (mouse), a ribosomal protein L35A (RPL35A) pseudogene and
             three CpG islands, complete sequence
          Length = 117026

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   tttgaaaaggtgagggagga 392
             ||||||||||||||||||||
Sbjct: 54003 tttgaaaaggtgagggagga 53984



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>emb|AL499604.9| Human DNA sequence from clone RP11-23B15 on chromosome 9 Contains FOXE1
             gene for forkhead box E1 (thyroid transcription factor 2),
             HEMGN gene for hemogen, 2 novel genes and 5 CpG islands,
             complete sequence
          Length = 160796

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 544   tatctttgtgaaatgagtag 563
             ||||||||||||||||||||
Sbjct: 49066 tatctttgtgaaatgagtag 49047



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>emb|AL356056.22| Human DNA sequence from clone RP11-38L15 on chromosome 10 Contains a gene
              for a protein similar to FLJ12916, two novel genes, the
              gene for synaptotagmin (CHR10SYT), a Ras homolog enriched
              in brain 2 (RHEB2) pseudogene, the 5' end of a novel gene
              (LOC142964) and two CpG islands, complete sequence
          Length = 183976

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 224    gcaggggctctgctcccacc 243
              ||||||||||||||||||||
Sbjct: 151550 gcaggggctctgctcccacc 151531



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>emb|AL035588.21|HS696P19 Human DNA sequence from clone RP4-696P19 on chromosome 6p12.3-21.2
             Contains the 3' end of the TFEB gene for transcription
             factor EB (TCFEB), a nucleophosmin (nucleolar
             phosphoprotein B23, numatrin) (NPM1) pseudogene, the MDFI
             gene for MyoD family inhibitor, the 5' end of a novel gene
             and two CpG islands, complete sequence
          Length = 110665

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 377   aaaaggtgagggaggagaag 396
             ||||||||||||||||||||
Sbjct: 71824 aaaaggtgagggaggagaag 71843



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>gb|AC096310.9| Rattus norvegicus 1 BAC CH230-121B19 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 218258

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 219   ggatcgcaggggctctgctcccac 242
             ||||||||||||| ||||||||||
Sbjct: 79423 ggatcgcaggggcactgctcccac 79446



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>dbj|AB038972.2| Homo sapiens CFLAR gene, complete cds
          Length = 51830

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 361   ttcactgacatatttgaaaa 380
             ||||||||||||||||||||
Sbjct: 14112 ttcactgacatatttgaaaa 14093



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>gb|AC048352.18| Homo sapiens 12 BAC RP11-871F6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 216792

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   gtgccaaagtttggagactg 329
             ||||||||||||||||||||
Sbjct: 16626 gtgccaaagtttggagactg 16645



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>gb|AC007283.3| Homo sapiens BAC clone RP11-536I18 from 2, complete sequence
          Length = 127361

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    ttcactgacatatttgaaaa 380
              ||||||||||||||||||||
Sbjct: 108447 ttcactgacatatttgaaaa 108466



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>emb|BX088539.6| Mouse DNA sequence from clone RP23-152D15 on chromosome X, complete
              sequence
          Length = 151751

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 499    aagaagtgacacccaccctg 518
              ||||||||||||||||||||
Sbjct: 123229 aagaagtgacacccaccctg 123210


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,442,624
Number of Sequences: 3902068
Number of extensions: 4442624
Number of successful extensions: 84952
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84812
Number of HSP's gapped (non-prelim): 140
length of query: 575
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 552
effective length of database: 17,143,297,704
effective search space: 9463100332608
effective search space used: 9463100332608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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