ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd18f18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009005.1| Triticum aestivum clone wdk2c.pk018.g2:fis, full ... 841 0.0
2ref|NM_189093.2| Oryza sativa (japonica cultivar-group), mRNA 145 2e-31
3dbj|AK059272.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
4gb|AY108711.1| Zea mays PCO139150 mRNA sequence 111 3e-21
5ref|NM_111177.3| Arabidopsis thaliana unknown protein AT3G03070 ... 101 2e-18
6gb|AF325039.2|AF325039 Arabidopsis thaliana AT3g03070 (AT3g03070... 101 2e-18
7emb|BX825616.1|CNS0A4XY Arabidopsis thaliana Full-length cDNA Co... 101 2e-18
8emb|BX826264.1|CNS0A6CC Arabidopsis thaliana Full-length cDNA Co... 101 2e-18
9gb|BT004574.1| Arabidopsis thaliana At3g03070 gene, complete cds 101 2e-18
10gb|AY087471.1| Arabidopsis thaliana clone 35785 mRNA, complete s... 101 2e-18
11dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 90 9e-15
12dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic D... 90 9e-15
13gb|AC124954.14| Medicago truncatula clone mth2-10g9, complete se... 56 1e-04
14gb|AC012328.6|ATAC012328 Arabidopsis thaliana chromosome III BAC... 52 0.002
15emb|AJ429077.1|HMA429077 Haloarcula marismortui ORF11, ORF10, OR... 44 0.49
16gb|AC069224.16| Homo sapiens 3 BAC RP11-16N11 (Roswell Park Canc... 44 0.49
17gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 44 0.49
18gb|AC123709.9| Mus musculus chromosome 13, clone RP23-375O18, co... 44 0.49
19gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete s... 42 2.0
20gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 7.7
21gb|AC126041.3| Mus musculus BAC clone RP24-268A23 from chromosom... 40 7.7
22gb|AC134540.3| Mus musculus BAC clone RP24-400M10 from chromosom... 40 7.7
23gb|AC060781.8| Mus musculus chromosome 19, clone RP23-196A19, co... 40 7.7
24gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, comple... 40 7.7
25gb|AC098715.3| Mus musculus BAC clone RP23-2D23 from 7, complete... 40 7.7
26gb|AC166741.1| Brassica rapa subsp. pekinensis clone KBrH080C09,... 40 7.7
27gb|AC016839.12| Homo sapiens chromosome 18, clone RP11-399L5, co... 40 7.7
28gb|AC087098.8| Genomic sequence for Mus musculus, clone RP23-206... 40 7.7
29dbj|AK089623.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 7.7
30gb|AY198340.1| Hordeum vulgare subsp. vulgare phosphoethanolamin... 40 7.7
31gb|AC078814.23| Homo sapiens 12 BAC RP11-848D3 (Roswell Park Can... 40 7.7
32gb|AC151286.4| Mus musculus BAC clone RP23-368B8 from chromosome... 40 7.7
33gb|AC147719.1| Gallus gallus BAC clone CH261-22J12 from chromoso... 40 7.7
34gb|AC165087.4| Mus musculus BAC clone RP23-198K7 from chromosome... 40 7.7
35emb|AL604023.12| Mouse DNA sequence from clone RP23-468D17 on ch... 40 7.7 
>gb|BT009005.1| Triticum aestivum clone wdk2c.pk018.g2:fis, full insert mRNA sequence
          Length = 1782

 Score =  841 bits (424), Expect = 0.0
 Identities = 503/528 (95%), Gaps = 1/528 (0%)
 Strand = Plus / Plus

                                                                        
Query: 31   ccgttatcagcc-tggcgaccgcaacgaggaggctgctcccgacgctccttagaacccta 89
            |||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1099 ccgtcatcagccatggcgaccgcaacgaggaggctgctcccgacgctcctcagaacccta 1158

                                                                        
Query: 90   accggcacccgccacgctggcgcggcgcggggcttcgccacggggaaggcagtcggcgct 149
            ||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| 
Sbjct: 1159 accggcacccgccaccctggcgcggcgcggggcctcgccacggagaaggcagtcggcgcc 1218

                                                                        
Query: 150  gcggccgtcgttggaagccacaccgccaaatggatgcaggacacaagcaagaaatctcca 209
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1219 gcggccgtcgttggaagccacaccgcgaaatggatgcaggacacaagcaagaaatctcca 1278

                                                                        
Query: 210  atggaactgatcaatgaggtgccaccgatcaaggttgaagggcgaattgctgcatgtgaa 269
            |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 1279 atggaacttatcaatgaggtgccaccaatcaaggttgaagggcgaattgccgcatgtgaa 1338

                                                                        
Query: 270  ggggataaaaaccctgcccttggccatccaattgagtacatctgccttgatctggaggca 329
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1339 ggggataaaaaccctgcccttggccatccaattgagtacatctgccttgatctggatgca 1398

                                                                        
Query: 330  cctgctgtgtgcaaatactgcggccttcgctatgttcaagaccaccatcactaattagac 389
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 1399 cctgctgtgtgcaaatactgcggccttcgctatgttcaagaccaccatcactaagtagag 1458

                                                                        
Query: 390  aagataccttaatttaccacagcagaatttggagttgctgcatgcttgttgggttcacaa 449
            |||||||| |  ||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 1459 aagataccatcctttaccacagcagaatttggagttgctgcatgctcattgggttcacaa 1518

                                                                        
Query: 450  tgtatgccaatgtactgtgtattgcgcttgatggcaaaatgttgtctatgactgtcatcc 509
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1519 tgtatgccaatgtactgtgtattgcgcttgatggcaaaatgttgtctgtgactgtcatcc 1578

                                                            
Query: 510  tacttcctgtgacataataatgttgctttaacttcgaattgattttct 557
            |||||  ||| ||| ||||||||||| |||||||||||||||||||||
Sbjct: 1579 tactttttgtaacacaataatgttgcattaacttcgaattgattttct 1626
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>ref|NM_189093.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 569

 Score =  145 bits (73), Expect = 2e-31
 Identities = 139/161 (86%)
 Strand = Plus / Plus

                                                                       
Query: 108 ggcgcggcgcggggcttcgccacggggaaggcagtcggcgctgcggccgtcgttggaagc 167
           ||||| ||||| ||| || |||||| || ||| |||||||| || |||||||| || |||
Sbjct: 94  ggcgccgcgcgaggcgtctccacggagagggcggtcggcgccgccgccgtcgtcggcagc 153

                                                                       
Query: 168 cacaccgccaaatggatgcaggacacaagcaagaaatctccaatggaactgatcaatgag 227
           ||||||||||| ||||||||||||||||||||||| || ||||||||| ||||||| |  
Sbjct: 154 cacaccgccaagtggatgcaggacacaagcaagaagtccccaatggaattgatcaacgca 213

                                                    
Query: 228 gtgccaccgatcaaggttgaagggcgaattgctgcatgtga 268
           || || ||||||||||||||||| ||||||||||| |||||
Sbjct: 214 gtacctccgatcaaggttgaaggacgaattgctgcttgtga 254



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 88/109 (80%)
 Strand = Plus / Plus

                                                                       
Query: 286 cccttggccatccaattgagtacatctgccttgatctggaggcacctgctgtgtgcaaat 345
           |||| |||||||| || || || ||||||||||| |||||    |||||||| ||||| |
Sbjct: 287 ccctcggccatccgatcgaatatatctgccttgacctggaccagcctgctgtatgcaagt 346

                                                            
Query: 346 actgcggccttcgctatgttcaagaccaccatcactaattagacaagat 394
           |||| || || || | ||||||||| |||||||||| |  |||||||||
Sbjct: 347 actgtggtctccgttttgttcaagatcaccatcactgagaagacaagat 395
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>dbj|AK059272.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B12, full
           insert sequence
          Length = 569

 Score =  145 bits (73), Expect = 2e-31
 Identities = 139/161 (86%)
 Strand = Plus / Plus

                                                                       
Query: 108 ggcgcggcgcggggcttcgccacggggaaggcagtcggcgctgcggccgtcgttggaagc 167
           ||||| ||||| ||| || |||||| || ||| |||||||| || |||||||| || |||
Sbjct: 94  ggcgccgcgcgaggcgtctccacggagagggcggtcggcgccgccgccgtcgtcggcagc 153

                                                                       
Query: 168 cacaccgccaaatggatgcaggacacaagcaagaaatctccaatggaactgatcaatgag 227
           ||||||||||| ||||||||||||||||||||||| || ||||||||| ||||||| |  
Sbjct: 154 cacaccgccaagtggatgcaggacacaagcaagaagtccccaatggaattgatcaacgca 213

                                                    
Query: 228 gtgccaccgatcaaggttgaagggcgaattgctgcatgtga 268
           || || ||||||||||||||||| ||||||||||| |||||
Sbjct: 214 gtacctccgatcaaggttgaaggacgaattgctgcttgtga 254



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 88/109 (80%)
 Strand = Plus / Plus

                                                                       
Query: 286 cccttggccatccaattgagtacatctgccttgatctggaggcacctgctgtgtgcaaat 345
           |||| |||||||| || || || ||||||||||| |||||    |||||||| ||||| |
Sbjct: 287 ccctcggccatccgatcgaatatatctgccttgacctggaccagcctgctgtatgcaagt 346

                                                            
Query: 346 actgcggccttcgctatgttcaagaccaccatcactaattagacaagat 394
           |||| || || || | ||||||||| |||||||||| |  |||||||||
Sbjct: 347 actgtggtctccgttttgttcaagatcaccatcactgagaagacaagat 395
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>gb|AY108711.1| Zea mays PCO139150 mRNA sequence
          Length = 724

 Score =  111 bits (56), Expect = 3e-21
 Identities = 119/140 (85%)
 Strand = Plus / Plus

                                                                       
Query: 134 gaaggcagtcggcgctgcggccgtcgttggaagccacaccgccaaatggatgcaggacac 193
           |||||| || ||||| || |||||||| || ||||||||||| || ||||||||||||||
Sbjct: 122 gaaggctgttggcgcagccgccgtcgtcggcagccacaccgctaagtggatgcaggacac 181

                                                                       
Query: 194 aagcaagaaatctccaatggaactgatcaatgaggtgccaccgatcaaggttgaagggcg 253
            |||||||| || ||||||||||||||||| ||||| || || ||||||||||| || ||
Sbjct: 182 gagcaagaagtcgccaatggaactgatcaacgaggtacctccaatcaaggttgatggtcg 241

                               
Query: 254 aattgctgcatgtgaagggg 273
            ||||| |  ||||||||||
Sbjct: 242 cattgccgtctgtgaagggg 261



 Score =  103 bits (52), Expect = 6e-19
 Identities = 85/96 (88%)
 Strand = Plus / Plus

                                                                       
Query: 288 cttggccatccaattgagtacatctgccttgatctggaggcacctgctgtgtgcaaatac 347
           |||||||| ||||| ||||||||||||||||||||||||||||||  ||||||||| |||
Sbjct: 279 cttggccacccaatcgagtacatctgccttgatctggaggcacctaatgtgtgcaagtac 338

                                               
Query: 348 tgcggccttcgctatgttcaagaccaccatcactaa 383
           || || || || ||||||||||  ||||||||||||
Sbjct: 339 tgtggtctccgttatgttcaagttcaccatcactaa 374



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                         
Query: 43 tggcgaccgcaacgaggaggctgctcccgacgctccttagaacccta 89
          |||||||||| ||| |||||||||||||  ||||||| || ||||||
Sbjct: 43 tggcgaccgcgacgcggaggctgctccccgcgctcctcaggacccta 89
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>ref|NM_111177.3| Arabidopsis thaliana unknown protein AT3G03070 mRNA, complete cds
          Length = 714

 Score =  101 bits (51), Expect = 2e-18
 Identities = 165/203 (81%)
 Strand = Plus / Plus

                                                                       
Query: 168 cacaccgccaaatggatgcaggacacaagcaagaaatctccaatggaactgatcaatgag 227
           ||||||||||||||||||||||| | |||||||||||| || ||||||||||| | ||||
Sbjct: 205 cacaccgccaaatggatgcaggatagaagcaagaaatcacctatggaactgattagtgag 264

                                                                       
Query: 228 gtgccaccgatcaaggttgaagggcgaattgctgcatgtgaaggggataaaaaccctgcc 287
           || ||||| ||||| ||||| ||  | |||| ||| |||||||| || |  || || |||
Sbjct: 265 gttccacctatcaaagttgatggaaggattgttgcttgtgaaggagacaccaatccggcc 324

                                                                       
Query: 288 cttggccatccaattgagtacatctgccttgatctggaggcacctgctgtgtgcaaatac 347
           || || |||||||| |||| ||| ||||| || ||  | |  |||||  | ||||| |||
Sbjct: 325 ctaggtcatccaatcgagttcatatgcctcgacctaaatgagcctgcgatctgcaagtac 384

                                  
Query: 348 tgcggccttcgctatgttcaaga 370
           ||||||||||| |||||||||||
Sbjct: 385 tgcggccttcgttatgttcaaga 407
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>gb|AF325039.2|AF325039 Arabidopsis thaliana AT3g03070 (AT3g03070/T17B22_24) mRNA, complete
           cds
          Length = 572

 Score =  101 bits (51), Expect = 2e-18
 Identities = 165/203 (81%)
 Strand = Plus / Plus

                                                                       
Query: 168 cacaccgccaaatggatgcaggacacaagcaagaaatctccaatggaactgatcaatgag 227
           ||||||||||||||||||||||| | |||||||||||| || ||||||||||| | ||||
Sbjct: 145 cacaccgccaaatggatgcaggatagaagcaagaaatcacctatggaactgattagtgag 204

                                                                       
Query: 228 gtgccaccgatcaaggttgaagggcgaattgctgcatgtgaaggggataaaaaccctgcc 287
           || ||||| ||||| ||||| ||  | |||| ||| |||||||| || |  || || |||
Sbjct: 205 gttccacctatcaaagttgatggaaggattgttgcttgtgaaggagacaccaatccggcc 264

                                                                       
Query: 288 cttggccatccaattgagtacatctgccttgatctggaggcacctgctgtgtgcaaatac 347
           || || |||||||| |||| ||| ||||| || ||  | |  |||||  | ||||| |||
Sbjct: 265 ctaggtcatccaatcgagttcatatgcctcgacctaaatgagcctgcgatctgcaagtac 324

                                  
Query: 348 tgcggccttcgctatgttcaaga 370
           ||||||||||| |||||||||||
Sbjct: 325 tgcggccttcgttatgttcaaga 347
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>emb|BX825616.1|CNS0A4XY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL49ZE04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 533

 Score =  101 bits (51), Expect = 2e-18
 Identities = 165/203 (81%)
 Strand = Plus / Plus

                                                                       
Query: 168 cacaccgccaaatggatgcaggacacaagcaagaaatctccaatggaactgatcaatgag 227
           ||||||||||||||||||||||| | |||||||||||| || ||||||||||| | ||||
Sbjct: 175 cacaccgccaaatggatgcaggatagaagcaagaaatcacctatggaactgattagtgag 234

                                                                       
Query: 228 gtgccaccgatcaaggttgaagggcgaattgctgcatgtgaaggggataaaaaccctgcc 287
           || ||||| ||||| ||||| ||  | |||| ||| |||||||| || |  || || |||
Sbjct: 235 gttccacctatcaaagttgatggaaggattgttgcttgtgaaggagacaccaatccggcc 294

                                                                       
Query: 288 cttggccatccaattgagtacatctgccttgatctggaggcacctgctgtgtgcaaatac 347
           || || |||||||| |||| ||| ||||| || ||  | |  |||||  | ||||| |||
Sbjct: 295 ctaggtcatccaatcgagttcatatgcctcgacctaaatgagcctgcgatctgcaagtac 354

                                  
Query: 348 tgcggccttcgctatgttcaaga 370
           ||||||||||| |||||||||||
Sbjct: 355 tgcggccttcgttatgttcaaga 377
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>emb|BX826264.1|CNS0A6CC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL95ZA08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 614

 Score =  101 bits (51), Expect = 2e-18
 Identities = 165/203 (81%)
 Strand = Plus / Plus

                                                                       
Query: 168 cacaccgccaaatggatgcaggacacaagcaagaaatctccaatggaactgatcaatgag 227
           ||||||||||||||||||||||| | |||||||||||| || ||||||||||| | ||||
Sbjct: 105 cacaccgccaaatggatgcaggatagaagcaagaaatcacctatggaactgattagtgag 164

                                                                       
Query: 228 gtgccaccgatcaaggttgaagggcgaattgctgcatgtgaaggggataaaaaccctgcc 287
           || ||||| ||||| ||||| ||  | |||| ||| |||||||| || |  || || |||
Sbjct: 165 gttccacctatcaaagttgatggaaggattgttgcttgtgaaggagacaccaatccggcc 224

                                                                       
Query: 288 cttggccatccaattgagtacatctgccttgatctggaggcacctgctgtgtgcaaatac 347
           || || |||||||| |||| ||| ||||| || ||  | |  |||||  | ||||| |||
Sbjct: 225 ctaggtcatccaatcgagttcatatgcctcgacctaaatgagcctgcgatctgcaagtac 284

                                  
Query: 348 tgcggccttcgctatgttcaaga 370
           ||||||||||| |||||||||||
Sbjct: 285 tgcggccttcgttatgttcaaga 307
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>gb|BT004574.1| Arabidopsis thaliana At3g03070 gene, complete cds
          Length = 333

 Score =  101 bits (51), Expect = 2e-18
 Identities = 165/203 (81%)
 Strand = Plus / Plus

                                                                       
Query: 168 cacaccgccaaatggatgcaggacacaagcaagaaatctccaatggaactgatcaatgag 227
           ||||||||||||||||||||||| | |||||||||||| || ||||||||||| | ||||
Sbjct: 118 cacaccgccaaatggatgcaggatagaagcaagaaatcacctatggaactgattagtgag 177

                                                                       
Query: 228 gtgccaccgatcaaggttgaagggcgaattgctgcatgtgaaggggataaaaaccctgcc 287
           || ||||| ||||| ||||| ||  | |||| ||| |||||||| || |  || || |||
Sbjct: 178 gttccacctatcaaagttgatggaaggattgttgcttgtgaaggagacaccaatccggcc 237

                                                                       
Query: 288 cttggccatccaattgagtacatctgccttgatctggaggcacctgctgtgtgcaaatac 347
           || || |||||||| |||| ||| ||||| || ||  | |  |||||  | ||||| |||
Sbjct: 238 ctaggtcatccaatcgagttcatatgcctcgacctaaatgagcctgcgatctgcaagtac 297

                                  
Query: 348 tgcggccttcgctatgttcaaga 370
           ||||||||||| |||||||||||
Sbjct: 298 tgcggccttcgttatgttcaaga 320
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>gb|AY087471.1| Arabidopsis thaliana clone 35785 mRNA, complete sequence
          Length = 639

 Score =  101 bits (51), Expect = 2e-18
 Identities = 165/203 (81%)
 Strand = Plus / Plus

                                                                       
Query: 168 cacaccgccaaatggatgcaggacacaagcaagaaatctccaatggaactgatcaatgag 227
           ||||||||||||||||||||||| | |||||||||||| || ||||||||||| | ||||
Sbjct: 214 cacaccgccaaatggatgcaggatagaagcaagaaatcacctatggaactgattagtgag 273

                                                                       
Query: 228 gtgccaccgatcaaggttgaagggcgaattgctgcatgtgaaggggataaaaaccctgcc 287
           || ||||| ||||| ||||| ||  | |||| ||| |||||||| || |  || || |||
Sbjct: 274 gttccacctatcaaagttgatggaaggattgttgcttgtgaaggagacaccaatccggcc 333

                                                                       
Query: 288 cttggccatccaattgagtacatctgccttgatctggaggcacctgctgtgtgcaaatac 347
           || || |||||||| |||| ||| ||||| || ||  | |  |||||  | ||||| |||
Sbjct: 334 ctaggtcatccaatcgagttcatatgcctcgacctaaatgagcctgcgatctgcaagtac 393

                                  
Query: 348 tgcggccttcgctatgttcaaga 370
           ||||||||||| |||||||||||
Sbjct: 394 tgcggccttcgttatgttcaaga 416
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 75/85 (88%)
 Strand = Plus / Plus

                                                                           
Query: 184     tgcaggacacaagcaagaaatctccaatggaactgatcaatgaggtgccaccgatcaagg 243
               ||||||||||||||||||| || ||||||||| ||||||| |  || || ||||||||||
Sbjct: 3608895 tgcaggacacaagcaagaagtccccaatggaattgatcaacgcagtacctccgatcaagg 3608954

                                        
Query: 244     ttgaagggcgaattgctgcatgtga 268
               ||||||| ||||||||||| |||||
Sbjct: 3608955 ttgaaggacgaattgctgcttgtga 3608979



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                           
Query: 108     ggcgcggcgcggggcttcgccacggggaaggcagtcggcgctgcggccgtcgttggaagc 167
               ||||| ||||| ||| || |||||| || ||| |||||||| || |||||||| || |||
Sbjct: 3607151 ggcgccgcgcgaggcgtctccacggagagggcggtcggcgccgccgccgtcgtcggcagc 3607210

                                     
Query: 168     cacaccgccaaatggatgcagg 189
               ||||||||||| ||||||||||
Sbjct: 3607211 cacaccgccaagtggatgcagg 3607232



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 88/109 (80%)
 Strand = Plus / Plus

                                                                           
Query: 286     cccttggccatccaattgagtacatctgccttgatctggaggcacctgctgtgtgcaaat 345
               |||| |||||||| || || || ||||||||||| |||||    |||||||| ||||| |
Sbjct: 3609136 ccctcggccatccgatcgaatatatctgccttgacctggaccagcctgctgtatgcaagt 3609195

                                                                
Query: 346     actgcggccttcgctatgttcaagaccaccatcactaattagacaagat 394
               |||| || || || | ||||||||| |||||||||| |  |||||||||
Sbjct: 3609196 actgtggtctccgttttgttcaagatcaccatcactgagaagacaagat 3609244
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>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0577B11
          Length = 180355

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 75/85 (88%)
 Strand = Plus / Plus

                                                                         
Query: 184   tgcaggacacaagcaagaaatctccaatggaactgatcaatgaggtgccaccgatcaagg 243
             ||||||||||||||||||| || ||||||||| ||||||| |  || || ||||||||||
Sbjct: 87401 tgcaggacacaagcaagaagtccccaatggaattgatcaacgcagtacctccgatcaagg 87460

                                      
Query: 244   ttgaagggcgaattgctgcatgtga 268
             ||||||| ||||||||||| |||||
Sbjct: 87461 ttgaaggacgaattgctgcttgtga 87485



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                         
Query: 108   ggcgcggcgcggggcttcgccacggggaaggcagtcggcgctgcggccgtcgttggaagc 167
             ||||| ||||| ||| || |||||| || ||| |||||||| || |||||||| || |||
Sbjct: 85657 ggcgccgcgcgaggcgtctccacggagagggcggtcggcgccgccgccgtcgtcggcagc 85716

                                   
Query: 168   cacaccgccaaatggatgcagg 189
             ||||||||||| ||||||||||
Sbjct: 85717 cacaccgccaagtggatgcagg 85738



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 88/109 (80%)
 Strand = Plus / Plus

                                                                         
Query: 286   cccttggccatccaattgagtacatctgccttgatctggaggcacctgctgtgtgcaaat 345
             |||| |||||||| || || || ||||||||||| |||||    |||||||| ||||| |
Sbjct: 87642 ccctcggccatccgatcgaatatatctgccttgacctggaccagcctgctgtatgcaagt 87701

                                                              
Query: 346   actgcggccttcgctatgttcaagaccaccatcactaattagacaagat 394
             |||| || || || | ||||||||| |||||||||| |  |||||||||
Sbjct: 87702 actgtggtctccgttttgttcaagatcaccatcactgagaagacaagat 87750
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>gb|AC124954.14| Medicago truncatula clone mth2-10g9, complete sequence
          Length = 115040

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 56/64 (87%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                         
Query: 187   aggacacaagcaagaaatctccaatggaactgatcaatgaggtgccaccgatcaaggttg 246
             |||| ||||||||||||||||||||||| || |||||||| |||||| | || ||||| |
Sbjct: 72102 aggatacaagcaagaaatctccaatggagct-atcaatgaagtgccaactattaaggtcg 72044

                 
Query: 247   aagg 250
             ||||
Sbjct: 72043 aagg 72040
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>gb|AC012328.6|ATAC012328 Arabidopsis thaliana chromosome III BAC T17B22 genomic sequence,
             complete sequence
          Length = 96540

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                   
Query: 194   aagcaagaaatctccaatggaactgatcaatgaggtgccaccgatcaaggttga 247
             |||||||||||| || ||||||||||| | |||||| ||||| ||||| |||||
Sbjct: 83869 aagcaagaaatcacctatggaactgattagtgaggttccacctatcaaagttga 83922



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 339   tgcaaatactgcggccttcgctatgttcaaga 370
             ||||| |||||||||||||| |||||||||||
Sbjct: 84119 tgcaagtactgcggccttcgttatgttcaaga 84150



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 168   cacaccgccaaatggatgcagg 189
             ||||||||||||||||||||||
Sbjct: 82804 cacaccgccaaatggatgcagg 82825
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>emb|AJ429077.1|HMA429077 Haloarcula marismortui ORF11, ORF10, ORF1, ORF2, ORF3, ORF4, narG gene,
             narH gene, ORF7, ORF8, narJ gene and ORF12 (partial)
          Length = 11087

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 138   gcagtcggcgctgcggccgtcg 159
             ||||||||||||||||||||||
Sbjct: 10223 gcagtcggcgctgcggccgtcg 10244
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>gb|AC069224.16| Homo sapiens 3 BAC RP11-16N11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164941

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 522    cataataatgttgctttaactt 543
              ||||||||||||||||||||||
Sbjct: 135109 cataataatgttgctttaactt 135088
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 138     gcagtcggcgctgcggccgtcg 159
               ||||||||||||||||||||||
Sbjct: 1072308 gcagtcggcgctgcggccgtcg 1072329
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>gb|AC123709.9| Mus musculus chromosome 13, clone RP23-375O18, complete sequence
          Length = 99670

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 320   tctggaggcacctgctgtgtgc 341
             ||||||||||||||||||||||
Sbjct: 66148 tctggaggcacctgctgtgtgc 66169
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>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence
          Length = 634917

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 211    tggaactgatcaatgaggtgc 231
              |||||||||||||||||||||
Sbjct: 601422 tggaactgatcaatgaggtgc 601442
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 235    cgatcaaggttgaagggcga 254
              ||||||||||||||||||||
Sbjct: 592936 cgatcaaggttgaagggcga 592917
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>gb|AC126041.3| Mus musculus BAC clone RP24-268A23 from chromosome 18, complete
           sequence
          Length = 168391

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 256 ttgctgcatgtgaaggggat 275
           ||||||||||||||||||||
Sbjct: 209 ttgctgcatgtgaaggggat 228
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>gb|AC134540.3| Mus musculus BAC clone RP24-400M10 from chromosome 18, complete sequence
          Length = 189505

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    ttgctgcatgtgaaggggat 275
              ||||||||||||||||||||
Sbjct: 176142 ttgctgcatgtgaaggggat 176161
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>gb|AC060781.8| Mus musculus chromosome 19, clone RP23-196A19, complete sequence
          Length = 207702

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 524    taataatgttgctttaactt 543
              ||||||||||||||||||||
Sbjct: 108628 taataatgttgctttaactt 108609
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>gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, complete sequence
          Length = 255921

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   atgtgaaggggataaaaacc 282
             ||||||||||||||||||||
Sbjct: 64712 atgtgaaggggataaaaacc 64693
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>gb|AC098715.3| Mus musculus BAC clone RP23-2D23 from 7, complete sequence
          Length = 247835

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 263    atgtgaaggggataaaaacc 282
              ||||||||||||||||||||
Sbjct: 232541 atgtgaaggggataaaaacc 232522
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>gb|AC166741.1| Brassica rapa subsp. pekinensis clone KBrH080C09, complete sequence
          Length = 132099

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 232   caccgatcaaggttgaagggcgaa 255
             |||||||||||||| |||||||||
Sbjct: 92497 caccgatcaaggttaaagggcgaa 92474
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>gb|AC016839.12| Homo sapiens chromosome 18, clone RP11-399L5, complete sequence
          Length = 152689

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 187    aggacacaagcaagaaatctccaa 210
              |||| |||||||||||||||||||
Sbjct: 124433 aggaaacaagcaagaaatctccaa 124410
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>gb|AC087098.8| Genomic sequence for Mus musculus, clone RP23-206M19, complete sequence
          Length = 198338

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 524    taataatgttgctttaactt 543
              ||||||||||||||||||||
Sbjct: 152955 taataatgttgctttaactt 152936
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>dbj|AK089623.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830005E05 product:unclassifiable, full
           insert sequence
          Length = 1704

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 524 taataatgttgctttaactt 543
           ||||||||||||||||||||
Sbjct: 455 taataatgttgctttaactt 436
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>gb|AY198340.1| Hordeum vulgare subsp. vulgare phosphoethanolamine
            cytidylyltransferase mRNA, complete cds
          Length = 1783

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 191  cacaagcaagaaatctccaa 210
            ||||||||||||||||||||
Sbjct: 1050 cacaagcaagaaatctccaa 1031
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>gb|AC078814.23| Homo sapiens 12 BAC RP11-848D3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 191463

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 525   aataatgttgctttaacttc 544
             ||||||||||||||||||||
Sbjct: 27504 aataatgttgctttaacttc 27523
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>gb|AC151286.4| Mus musculus BAC clone RP23-368B8 from chromosome 17, complete sequence
          Length = 178835

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 456   ccaatgtactgtgtattgcg 475
             ||||||||||||||||||||
Sbjct: 68900 ccaatgtactgtgtattgcg 68881
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>gb|AC147719.1| Gallus gallus BAC clone CH261-22J12 from chromosome unknown, complete
            sequence
          Length = 192198

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 532  ttgctttaacttcgaattgatttt 555
            |||||||||||| |||||||||||
Sbjct: 7508 ttgctttaactttgaattgatttt 7485
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>gb|AC165087.4| Mus musculus BAC clone RP23-198K7 from chromosome 17, complete sequence
          Length = 211272

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 456   ccaatgtactgtgtattgcg 475
             ||||||||||||||||||||
Sbjct: 34291 ccaatgtactgtgtattgcg 34310
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>emb|AL604023.12| Mouse DNA sequence from clone RP23-468D17 on chromosome 11, complete
             sequence
          Length = 225399

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   tggatgcaggacacaagcaa 199
             ||||||||||||||||||||
Sbjct: 30792 tggatgcaggacacaagcaa 30773


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,721,524
Number of Sequences: 3902068
Number of extensions: 4721524
Number of successful extensions: 85137
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85005
Number of HSP's gapped (non-prelim): 132
length of query: 569
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 546
effective length of database: 17,143,297,704
effective search space: 9360240546384
effective search space used: 9360240546384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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