ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd18f13 |
|---|---|
| Clone Library Name | barley_pub |
>UBE4B_MOUSE (Q9ES00) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion| degradation protein 2) (Ufd2a) Length = 1173 Score = 116 bits (291), Expect = 4e-26 Identities = 60/180 (33%), Positives = 100/180 (55%) Frame = +3 Query: 60 LFEGHQLCLDYLVKNLLKLYVDIEFTGSHTQFFDKFNIRHNIAELLEYLWDVPSHRNAWR 239 + E H L LV +L+K Y D+E TG+ ++F+DKF IR++I+ + + LW +H + Sbjct: 826 MIENHPLSTKLLVPSLMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFM 885 Query: 240 QMAKQEEKGVYLNFLNFLINDSIYLLDESLKRILELKEIEAEMANTVXXXXXXXXXXXXX 419 + ++ ++ ++N LIND+ +LLDESL+ + + E++ EM N Sbjct: 886 EEFNSGKQ--FVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQAR 943 Query: 420 XXXFHQSENIARFDMKLANEDVGMLAFTSEQIPAPLLLPEMVERVASMLNYFLLQLAGPQ 599 Q E ++R + LA E V M ++Q+ P L PE+ R+A+MLN+ L QL GP+ Sbjct: 944 QSQLAQDERVSRSYLALATETVDMFHLLTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPK 1003
>UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion| degradation protein 2) (Homozygously deleted in neuroblastoma 1) Length = 1302 Score = 116 bits (291), Expect = 4e-26 Identities = 60/180 (33%), Positives = 100/180 (55%) Frame = +3 Query: 60 LFEGHQLCLDYLVKNLLKLYVDIEFTGSHTQFFDKFNIRHNIAELLEYLWDVPSHRNAWR 239 + E H L LV +L+K Y D+E TG+ ++F+DKF IR++I+ + + LW +H + Sbjct: 955 MIENHPLSTKLLVPSLMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFM 1014 Query: 240 QMAKQEEKGVYLNFLNFLINDSIYLLDESLKRILELKEIEAEMANTVXXXXXXXXXXXXX 419 + ++ ++ ++N LIND+ +LLDESL+ + + E++ EM N Sbjct: 1015 EEFNSGKQ--FVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQAR 1072 Query: 420 XXXFHQSENIARFDMKLANEDVGMLAFTSEQIPAPLLLPEMVERVASMLNYFLLQLAGPQ 599 Q E ++R + LA E V M ++Q+ P L PE+ R+A+MLN+ L QL GP+ Sbjct: 1073 QSQLAQDERVSRSYLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPK 1132
>UBE4A_RAT (Q6P7A2) Ubiquitin conjugation factor E4 A| Length = 1066 Score = 108 bits (269), Expect = 2e-23 Identities = 69/214 (32%), Positives = 115/214 (53%), Gaps = 16/214 (7%) Frame = +3 Query: 6 EVLKSWMPQRRGLKS--TASLFEGHQLCLDY-----LVKNLLKLYVDIEFTGSHTQFFDK 164 EVL++ MP S +S+F ++ ++ L + L+K++VDIEFTG QF K Sbjct: 682 EVLEAVMPHLDQTPSPLVSSVFHRKRVFCNFPYAPQLSEALIKVFVDIEFTGDPHQFEQK 741 Query: 165 FNIRHNIAELLEYLWDVPSHRNAWRQMAKQEEKG-------VYLNFLNFLINDSIYLLDE 323 FN R + +L Y+W S+R + + +A K ++L FLN L+ND+I+LLDE Sbjct: 742 FNYRRPMYPILRYMWGTDSYRESIKDLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDE 801 Query: 324 SLKRI--LELKEIEAEMANTVXXXXXXXXXXXXXXXXFHQSENIARFDMKLANEDVGMLA 497 +++ + +++++IE + F Q +ARF ++NE +G L+ Sbjct: 802 AIQYLSKIKIQQIEKDRGEWESLTPEARREKEAGLQMFGQ---LARFHNIMSNETIGTLS 858 Query: 498 FTSEQIPAPLLLPEMVERVASMLNYFLLQLAGPQ 599 F + +I + + P + ER+ SMLNYFL L GP+ Sbjct: 859 FLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPK 892
>UBE4A_PONPY (Q5R9G3) Ubiquitin conjugation factor E4 A| Length = 1066 Score = 107 bits (267), Expect = 3e-23 Identities = 62/178 (34%), Positives = 98/178 (55%), Gaps = 9/178 (5%) Frame = +3 Query: 93 LVKNLLKLYVDIEFTGSHTQFFDKFNIRHNIAELLEYLWDVPSHRNAWRQMAKQEEKGV- 269 L + L+K++VDIEFTG QF KFN R + +L Y+W ++R + + +A K + Sbjct: 718 LAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESIKDLADYASKNLE 777 Query: 270 ------YLNFLNFLINDSIYLLDESLKRILELK--EIEAEMANTVXXXXXXXXXXXXXXX 425 +L FLN L+ND+I+LLDE+++ + ++K +IE + Sbjct: 778 AMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIEKDRGEWDSLTPEARREKEAGLQ 837 Query: 426 XFHQSENIARFDMKLANEDVGMLAFTSEQIPAPLLLPEMVERVASMLNYFLLQLAGPQ 599 F Q +ARF ++NE +G LAF + +I + + P + ER+ SMLNYFL L GP+ Sbjct: 838 MFGQ---LARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPK 892
>UBE4A_HUMAN (Q14139) Ubiquitin conjugation factor E4 A| Length = 1066 Score = 107 bits (267), Expect = 3e-23 Identities = 62/178 (34%), Positives = 98/178 (55%), Gaps = 9/178 (5%) Frame = +3 Query: 93 LVKNLLKLYVDIEFTGSHTQFFDKFNIRHNIAELLEYLWDVPSHRNAWRQMAKQEEKGV- 269 L + L+K++VDIEFTG QF KFN R + +L Y+W ++R + + +A K + Sbjct: 718 LAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESIKDLADYASKNLE 777 Query: 270 ------YLNFLNFLINDSIYLLDESLKRILELK--EIEAEMANTVXXXXXXXXXXXXXXX 425 +L FLN L+ND+I+LLDE+++ + ++K +IE + Sbjct: 778 AMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIEKDRGEWDSLTPEARREKEAGLQ 837 Query: 426 XFHQSENIARFDMKLANEDVGMLAFTSEQIPAPLLLPEMVERVASMLNYFLLQLAGPQ 599 F Q +ARF ++NE +G LAF + +I + + P + ER+ SMLNYFL L GP+ Sbjct: 838 MFGQ---LARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPK 892
>UFD2_SCHPO (Q9HE05) Ubiquitin conjugation factor E4 (Ubiquitin fusion| degradation protein 2) (UB fusion protein 2) Length = 1010 Score = 95.1 bits (235), Expect = 1e-19 Identities = 54/170 (31%), Positives = 89/170 (52%) Frame = +3 Query: 90 YLVKNLLKLYVDIEFTGSHTQFFDKFNIRHNIAELLEYLWDVPSHRNAWRQMAKQEEKGV 269 +L+ L+ Y++IE TG TQF+DKFNIR I E+ +W P++ Q K Sbjct: 667 WLLPALMAFYIEIESTGQSTQFYDKFNIRFYICEVFRTIWKQPAYFGKLEQEQK-TNLPF 725 Query: 270 YLNFLNFLINDSIYLLDESLKRILELKEIEAEMANTVXXXXXXXXXXXXXXXXFHQSENI 449 ++ F+ ++ND+ YLLDE+L ++ E+ +++ +A+ + +E Sbjct: 726 FVKFVALMLNDATYLLDEALLKLTEIHNLQSLLADAI-SNSNSNQNVQESQSNLAAAERQ 784 Query: 450 ARFDMKLANEDVGMLAFTSEQIPAPLLLPEMVERVASMLNYFLLQLAGPQ 599 A +L NE + ML + IP E+V+R+A+MLNY L L GP+ Sbjct: 785 ASTYCQLGNETIFMLKLFTSSIPKAFCAVEIVDRLAAMLNYNLQALCGPK 834
>UFD2_YEAST (P54860) Ubiquitin conjugation factor E4 (Ubiquitin fusion| degradation protein 2) (UB fusion protein 2) Length = 961 Score = 92.0 bits (227), Expect = 1e-18 Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 4/184 (2%) Frame = +3 Query: 60 LFEGHQLCLDYLVKNLLKLYVDIEFTGSHTQFFDKFNIRHNIAELLEYL-WDVPSHRN-- 230 +FE +L L+ LL YV +E TGS +QF+DKFN R++I+ +LE L + +PS++N Sbjct: 603 IFEHDELVNKNLLYALLDFYVIVEKTGSSSQFYDKFNSRYSISIILEELYYKIPSYKNQL 662 Query: 231 AWRQMAKQEEKGVYLNFLNFLINDSIYLLDESLKRILELKEIEAEMANTVXXX-XXXXXX 407 W+ Q ++ F ++ND +LLDE L + E+ I+ E+ N Sbjct: 663 IWQ---SQNNADFFVRFDARMLNDLTFLLDEGLSNLAEVHNIQNELDNRARGAPPTREEE 719 Query: 408 XXXXXXXFHQSENIARFDMKLANEDVGMLAFTSEQIPAPLLLPEMVERVASMLNYFLLQL 587 + A+ LA++ + + S+ IPA + PE+V R+ASMLNY L L Sbjct: 720 DKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLESL 779 Query: 588 AGPQ 599 GP+ Sbjct: 780 VGPK 783
>UBE4_CAEEL (Q09349) Probable ubiquitin conjugation factor E4| Length = 980 Score = 77.0 bits (188), Expect = 4e-14 Identities = 47/173 (27%), Positives = 89/173 (51%) Frame = +3 Query: 75 QLCLDYLVKNLLKLYVDIEFTGSHTQFFDKFNIRHNIAELLEYLWDVPSHRNAWRQMAKQ 254 ++ + L+ ++K Y D E G F++KFN+R NI +LE + + ++ + MA+ Sbjct: 640 RMAQENLLMCMIKFYSDFEDNGD---FYEKFNVRGNIQYMLEKMEEDMFYKGKFMDMAR- 695 Query: 255 EEKGVYLNFLNFLINDSIYLLDESLKRILELKEIEAEMANTVXXXXXXXXXXXXXXXXFH 434 E ++ F+N +IND+ + +DESL + + ++E +MAN V + Sbjct: 696 ECGAEFIRFVNMVINDATWCIDESLSGLKSIHDVEKKMANKVEWDNTDQEIRNQDLGVYE 755 Query: 435 QSENIARFDMKLANEDVGMLAFTSEQIPAPLLLPEMVERVASMLNYFLLQLAG 593 +++ + + A ++ +L + P P P + ER+A+MLN+ L QL G Sbjct: 756 EAKRKVKGWLGTAKSNLKLLLSITVNSPEPFRTPVLGERLAAMLNHNLSQLIG 808
>LPXD_CHLPN (Q9Z8N6) UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase| (EC 2.3.1.-) Length = 360 Score = 32.0 bits (71), Expect = 1.4 Identities = 20/70 (28%), Positives = 31/70 (44%) Frame = -2 Query: 549 FPPFLEEAKVLEFVLK*KQASQHPHLRASYQIEQYSLTDETRATAPLFLQQVCSPMQQY* 370 + FL+ K +L QA QH HL+ ++ I S + + LF++ V S Sbjct: 50 YSSFLKNTKAGAIILSRSQAMQHAHLKKNFLITNESPSLTFQKCIELFIEPVTSGFPGIH 109 Query: 369 PFQPLFPLAR 340 P + P AR Sbjct: 110 PTAVIHPTAR 119
>UBP16_YEAST (Q02863) Ubiquitin carboxyl-terminal hydrolase 16 (EC 3.1.2.15)| (Ubiquitin thioesterase 16) (Ubiquitin-specific-processing protease 16) (Deubiquitinating enzyme 16) Length = 499 Score = 30.0 bits (66), Expect = 5.3 Identities = 13/16 (81%), Positives = 14/16 (87%) Frame = +1 Query: 130 NSLAPIHNSLTSLIFD 177 NSLAP+H SLTSLI D Sbjct: 120 NSLAPLHESLTSLILD 135
>Y1248_METJA (Q58645) Hypothetical protein MJ1248| Length = 154 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 5/47 (10%) Frame = +3 Query: 99 KNLLKLYVDIEFT-----GSHTQFFDKFNIRHNIAELLEYLWDVPSH 224 K+L ++ + +EF+ GS T F +KFNI+ + +L Y+ DV S+ Sbjct: 18 KSLRRILIILEFSLRKKDGSPTSFAEKFNIK-SFGDLYNYIRDVKSN 63
>SYI_MESFL (Q6F175) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 908 Score = 29.3 bits (64), Expect = 9.1 Identities = 24/101 (23%), Positives = 42/101 (41%) Frame = +3 Query: 72 HQLCLDYLVKNLLKLYVDIEFTGSHTQFFDKFNIRHNIAELLEYLWDVPSHRNAWRQMAK 251 + L ++Y+ K+L Y+D + + D R L E LW + + R + Sbjct: 703 YNLVVNYVTKDLSSFYLDFIKDILYIEKNDSIRRRQVQTVLYEQLWMLI---DLLRPILI 759 Query: 252 QEEKGVYLNFLNFLINDSIYLLDESLKRILELKEIEAEMAN 374 + VY +N DS++LLD + +E E + N Sbjct: 760 HTIEEVYQAMVNLNKTDSVHLLDNKKQDFIESNEFVTKWNN 800 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,734,045 Number of Sequences: 219361 Number of extensions: 1466933 Number of successful extensions: 4132 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4026 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4115 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
