| Clone Name | basd18f13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468783.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3371 Score = 644 bits (325), Expect = 0.0 Identities = 532/601 (88%) Strand = Plus / Plus Query: 1 tggttgaagttttgaaaagctggatgccgcaaagaagaggcttgaaatccacagcctcgt 60 |||||||||||||||| |||||||||| |||||||| || |||| || |||||||| | Sbjct: 1934 tggttgaagttttgaattgctggatgccacaaagaagtgggttgagttctacagcctcat 1993 Query: 61 tatttgaggggcaccaactatgtctcgattatcttgtcaagaatcttctaaagctttatg 120 ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| Sbjct: 1994 tatttgaggggcaccaactatgtctcgattacctggtcaaaaatcttctaaagctttatg 2053 Query: 121 tggatattgaattcactggctcccatacacaattctttgacaagtttaatattcgacaca 180 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | Sbjct: 2054 tggatattgaattcactggttcccatacacaattctttgacaagtttaacattcgacata 2113 Query: 181 acattgctgagcttcttgagtatttatgggatgttcccagtcatcgaaatgcttggagac 240 | |||||||||||||| |||||| |||||||||| ||||||||||| ||||| ||||||| Sbjct: 2114 atattgctgagcttctagagtatctatgggatgtccccagtcatcggaatgcatggagac 2173 Query: 241 aaatggctaaacaagaggaaaagggcgtctacttgaattttctgaacttccttatcaatg 300 ||| |||||| | ||||| |||||||| || || |||||| |||||||||||||||||| Sbjct: 2174 gaatagctaaagaggaggagaagggcgtatatttaaattttttgaacttccttatcaatg 2233 Query: 301 atagcatctatcttcttgatgagagtttgaaaaggattctcgagctaaaggaaatagagg 360 ||||||||||||||||||||||||||||||| | || ||||| || || |||||||||| Sbjct: 2234 atagcatctatcttcttgatgagagtttgaacaaaatcctcgaactgaaagaaatagagg 2293 Query: 361 ctgaaatggctaatactgttgcatgggagagcagacctgctgaagaaagagaggagcggt 420 |||||||||||||| ||| | ||||| ||||| || || |||||||||||||| | | Sbjct: 2294 ctgaaatggctaatgttgtagagtgggaaagcaggccacctcaagaaagagaggagagat 2353 Query: 421 tgcgcgcgtttcatcagtcagagaatattgctcgatttgatatgaagctcgcaaatgagg 480 |||| | |||||||||| |||||| ||| ||||||||| |||||||| |||||||||| Sbjct: 2354 tgcgtgtatttcatcagtgggagaatgttgttcgatttgacatgaagctagcaaatgagg 2413 Query: 481 atgttgggatgcttgcttttacttcagaacaaattccagcacctttgcttcttccagaaa 540 ||||||||||||||||||| || ||||| || |||||||||||||| || ||||| |||| Sbjct: 2414 atgttgggatgcttgctttcacgtcagagcagattccagcacctttcctccttcctgaaa 2473 Query: 541 tggtggaaagggtggcgagcatgttaaattacttcctcttgcagcttgctggtccccaga 600 |||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |||| Sbjct: 2474 tggtggaaagggtggcaagcatgctaaattacttcctcttgcaacttgctggtcctcaga 2533 Query: 601 g 601 | Sbjct: 2534 g 2534
>gb|AY109424.1| Zea mays CL2020_2 mRNA sequence Length = 1022 Score = 204 bits (103), Expect = 2e-49 Identities = 184/211 (87%) Strand = Plus / Plus Query: 391 gcagacctgctgaagaaagagaggagcggttgcgcgcgtttcatcagtcagagaatattg 450 ||||||||||| ||||||||||||||||| | || | |||||||| | || ||||||| Sbjct: 3 gcagacctgctcaagaaagagaggagcggctccgtgtatttcatcaatgggaaaatattg 62 Query: 451 ctcgatttgatatgaagctcgcaaatgaggatgttgggatgcttgcttttacttcagaac 510 ||||||||| |||| ||| || ||||||||||||||||||||||| || || || |||| Sbjct: 63 ttcgatttgacatgaggctagccaatgaggatgttgggatgcttgcattcacctcggaac 122 Query: 511 aaattccagcacctttgcttcttccagaaatggtggaaagggtggcgagcatgttaaatt 570 |||||||||||||||| ||||| || ||||||||||||||||| ||||||||| | |||| Sbjct: 123 aaattccagcacctttccttctccctgaaatggtggaaagggtcgcgagcatgcttaatt 182 Query: 571 acttcctcttgcagcttgctggtccccagag 601 ||||||||||||| ||||||||||| ||||| Sbjct: 183 acttcctcttgcaacttgctggtcctcagag 213
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 163 bits (82), Expect = 8e-37 Identities = 97/102 (95%) Strand = Plus / Plus Query: 51 acagcctcgttatttgaggggcaccaactatgtctcgattatcttgtcaagaatcttcta 110 |||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||| Sbjct: 17701550 acagcctcattatttgaggggcaccaactatgtctcgattacctggtcaaaaatcttcta 17701609 Query: 111 aagctttatgtggatattgaattcactggctcccatacacaa 152 ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 17701610 aagctttatgtggatattgaattcactggttcccatacacaa 17701651 Score = 153 bits (77), Expect = 8e-34 Identities = 164/193 (84%) Strand = Plus / Plus Query: 246 gctaaacaagaggaaaagggcgtctacttgaattttctgaacttccttatcaatgatagc 305 |||||| | ||||| |||||||| || || |||||| ||||||||||||||||||||||| Sbjct: 17701925 gctaaagaggaggagaagggcgtatatttaaattttttgaacttccttatcaatgatagc 17701984 Query: 306 atctatcttcttgatgagagtttgaaaaggattctcgagctaaaggaaatagaggctgaa 365 |||||||||||||||||||||||||| | || ||||| || || ||||||||||||||| Sbjct: 17701985 atctatcttcttgatgagagtttgaacaaaatcctcgaactgaaagaaatagaggctgaa 17702044 Query: 366 atggctaatactgttgcatgggagagcagacctgctgaagaaagagaggagcggttgcgc 425 ||||||||| ||| | ||||| ||||| || || |||||||||||||| | ||||| Sbjct: 17702045 atggctaatgttgtagagtgggaaagcaggccacctcaagaaagagaggagagattgcgt 17702104 Query: 426 gcgtttcatcagt 438 | |||||||||| Sbjct: 17702105 gtatttcatcagt 17702117 Score = 113 bits (57), Expect = 7e-22 Identities = 84/93 (90%) Strand = Plus / Plus Query: 452 tcgatttgatatgaagctcgcaaatgaggatgttgggatgcttgcttttacttcagaaca 511 ||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| || Sbjct: 17702228 tcgatttgacatgaagctagcaaatgaggatgttgggatgcttgctttcacgtcagagca 17702287 Query: 512 aattccagcacctttgcttcttccagaaatggt 544 |||||||||||||| || ||||| |||||||| Sbjct: 17702288 gattccagcacctttcctccttcctgaaatggt 17702320 Score = 111 bits (56), Expect = 3e-21 Identities = 80/88 (90%) Strand = Plus / Plus Query: 153 ttctttgacaagtttaatattcgacacaacattgctgagcttcttgagtatttatgggat 212 ||||||||||||||||| |||||||| || |||||||||||||| |||||| |||||||| Sbjct: 17701752 ttctttgacaagtttaacattcgacataatattgctgagcttctagagtatctatgggat 17701811 Query: 213 gttcccagtcatcgaaatgcttggagac 240 || ||||||||||| ||||| ||||||| Sbjct: 17701812 gtccccagtcatcggaatgcatggagac 17701839 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Plus Query: 542 ggtggaaagggtggcgagcatgttaaattacttcctcttgcagcttgctggtccccagag 601 ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct: 17702552 ggtggaaagggtggcaagcatgctaaattacttcctcttgcaacttgctggtcctcagag 17702611 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 1 tggttgaagttttgaaaagctggatgccgcaaagaag 37 |||||||||||||||| |||||||||| |||||||| Sbjct: 17701410 tggttgaagttttgaattgctggatgccacaaagaag 17701446
>gb|AC133398.4| Oryza sativa chromosome 3 BAC OSJNBa0083F15 genomic sequence, complete sequence Length = 136916 Score = 163 bits (82), Expect = 8e-37 Identities = 97/102 (95%) Strand = Plus / Minus Query: 51 acagcctcgttatttgaggggcaccaactatgtctcgattatcttgtcaagaatcttcta 110 |||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||| Sbjct: 82457 acagcctcattatttgaggggcaccaactatgtctcgattacctggtcaaaaatcttcta 82398 Query: 111 aagctttatgtggatattgaattcactggctcccatacacaa 152 ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 82397 aagctttatgtggatattgaattcactggttcccatacacaa 82356 Score = 153 bits (77), Expect = 8e-34 Identities = 164/193 (84%) Strand = Plus / Minus Query: 246 gctaaacaagaggaaaagggcgtctacttgaattttctgaacttccttatcaatgatagc 305 |||||| | ||||| |||||||| || || |||||| ||||||||||||||||||||||| Sbjct: 82082 gctaaagaggaggagaagggcgtatatttaaattttttgaacttccttatcaatgatagc 82023 Query: 306 atctatcttcttgatgagagtttgaaaaggattctcgagctaaaggaaatagaggctgaa 365 |||||||||||||||||||||||||| | || ||||| || || ||||||||||||||| Sbjct: 82022 atctatcttcttgatgagagtttgaacaaaatcctcgaactgaaagaaatagaggctgaa 81963 Query: 366 atggctaatactgttgcatgggagagcagacctgctgaagaaagagaggagcggttgcgc 425 ||||||||| ||| | ||||| ||||| || || |||||||||||||| | ||||| Sbjct: 81962 atggctaatgttgtagagtgggaaagcaggccacctcaagaaagagaggagagattgcgt 81903 Query: 426 gcgtttcatcagt 438 | |||||||||| Sbjct: 81902 gtatttcatcagt 81890 Score = 113 bits (57), Expect = 7e-22 Identities = 84/93 (90%) Strand = Plus / Minus Query: 452 tcgatttgatatgaagctcgcaaatgaggatgttgggatgcttgcttttacttcagaaca 511 ||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| || Sbjct: 81779 tcgatttgacatgaagctagcaaatgaggatgttgggatgcttgctttcacgtcagagca 81720 Query: 512 aattccagcacctttgcttcttccagaaatggt 544 |||||||||||||| || ||||| |||||||| Sbjct: 81719 gattccagcacctttcctccttcctgaaatggt 81687 Score = 111 bits (56), Expect = 3e-21 Identities = 80/88 (90%) Strand = Plus / Minus Query: 153 ttctttgacaagtttaatattcgacacaacattgctgagcttcttgagtatttatgggat 212 ||||||||||||||||| |||||||| || |||||||||||||| |||||| |||||||| Sbjct: 82255 ttctttgacaagtttaacattcgacataatattgctgagcttctagagtatctatgggat 82196 Query: 213 gttcccagtcatcgaaatgcttggagac 240 || ||||||||||| ||||| ||||||| Sbjct: 82195 gtccccagtcatcggaatgcatggagac 82168 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Minus Query: 542 ggtggaaagggtggcgagcatgttaaattacttcctcttgcagcttgctggtccccagag 601 ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct: 81455 ggtggaaagggtggcaagcatgctaaattacttcctcttgcaacttgctggtcctcagag 81396 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 1 tggttgaagttttgaaaagctggatgccgcaaagaag 37 |||||||||||||||| |||||||||| |||||||| Sbjct: 82597 tggttgaagttttgaattgctggatgccacaaagaag 82561
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 163 bits (82), Expect = 8e-37 Identities = 97/102 (95%) Strand = Plus / Plus Query: 51 acagcctcgttatttgaggggcaccaactatgtctcgattatcttgtcaagaatcttcta 110 |||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||| Sbjct: 17695091 acagcctcattatttgaggggcaccaactatgtctcgattacctggtcaaaaatcttcta 17695150 Query: 111 aagctttatgtggatattgaattcactggctcccatacacaa 152 ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 17695151 aagctttatgtggatattgaattcactggttcccatacacaa 17695192 Score = 153 bits (77), Expect = 8e-34 Identities = 164/193 (84%) Strand = Plus / Plus Query: 246 gctaaacaagaggaaaagggcgtctacttgaattttctgaacttccttatcaatgatagc 305 |||||| | ||||| |||||||| || || |||||| ||||||||||||||||||||||| Sbjct: 17695466 gctaaagaggaggagaagggcgtatatttaaattttttgaacttccttatcaatgatagc 17695525 Query: 306 atctatcttcttgatgagagtttgaaaaggattctcgagctaaaggaaatagaggctgaa 365 |||||||||||||||||||||||||| | || ||||| || || ||||||||||||||| Sbjct: 17695526 atctatcttcttgatgagagtttgaacaaaatcctcgaactgaaagaaatagaggctgaa 17695585 Query: 366 atggctaatactgttgcatgggagagcagacctgctgaagaaagagaggagcggttgcgc 425 ||||||||| ||| | ||||| ||||| || || |||||||||||||| | ||||| Sbjct: 17695586 atggctaatgttgtagagtgggaaagcaggccacctcaagaaagagaggagagattgcgt 17695645 Query: 426 gcgtttcatcagt 438 | |||||||||| Sbjct: 17695646 gtatttcatcagt 17695658 Score = 113 bits (57), Expect = 7e-22 Identities = 84/93 (90%) Strand = Plus / Plus Query: 452 tcgatttgatatgaagctcgcaaatgaggatgttgggatgcttgcttttacttcagaaca 511 ||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| || Sbjct: 17695769 tcgatttgacatgaagctagcaaatgaggatgttgggatgcttgctttcacgtcagagca 17695828 Query: 512 aattccagcacctttgcttcttccagaaatggt 544 |||||||||||||| || ||||| |||||||| Sbjct: 17695829 gattccagcacctttcctccttcctgaaatggt 17695861 Score = 111 bits (56), Expect = 3e-21 Identities = 80/88 (90%) Strand = Plus / Plus Query: 153 ttctttgacaagtttaatattcgacacaacattgctgagcttcttgagtatttatgggat 212 ||||||||||||||||| |||||||| || |||||||||||||| |||||| |||||||| Sbjct: 17695293 ttctttgacaagtttaacattcgacataatattgctgagcttctagagtatctatgggat 17695352 Query: 213 gttcccagtcatcgaaatgcttggagac 240 || ||||||||||| ||||| ||||||| Sbjct: 17695353 gtccccagtcatcggaatgcatggagac 17695380 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Plus Query: 542 ggtggaaagggtggcgagcatgttaaattacttcctcttgcagcttgctggtccccagag 601 ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct: 17696093 ggtggaaagggtggcaagcatgctaaattacttcctcttgcaacttgctggtcctcagag 17696152 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 1 tggttgaagttttgaaaagctggatgccgcaaagaag 37 |||||||||||||||| |||||||||| |||||||| Sbjct: 17694951 tggttgaagttttgaattgctggatgccacaaagaag 17694987
>ref|NM_121544.2| Arabidopsis thaliana ubiquitin-protein ligase AT5G15400 mRNA, complete cds Length = 3401 Score = 101 bits (51), Expect = 3e-18 Identities = 192/239 (80%) Strand = Plus / Plus Query: 84 ctcgattatcttgtcaagaatcttctaaagctttatgtggatattgaattcactggctcc 143 ||||| |||||||||| |||| | || || || ||||| || ||||| ||||| || || Sbjct: 2244 ctcgagtatcttgtcaggaatttactgaaactatatgttgacattgagttcacgggttca 2303 Query: 144 catacacaattctttgacaagtttaatattcgacacaacattgctgagcttcttgagtat 203 || || || |||| ||||||||| |||||||| ||||||||||| |||||| | |||||| Sbjct: 2304 cacactcagttctatgacaagttcaatattcgccacaacattgccgagcttttagagtat 2363 Query: 204 ttatgggatgttcccagtcatcgaaatgcttggagacaaatggctaaacaagaggaaaag 263 | ||| | || || ||||| |||||||| ||||||| || || ||| | || || ||| Sbjct: 2364 ctctggcaggtgcctagtcaccgaaatgcatggagacggattgcaaaagacgaagagaag 2423 Query: 264 ggcgtctacttgaattttctgaacttccttatcaatgatagcatctatcttcttgatga 322 ||||| |||||||| || | |||||| | |||||||||||||||||||||| ||||| Sbjct: 2424 ggcgtgtacttgaacttcttaaacttcttagtcaatgatagcatctatcttctggatga 2482
>gb|AY050458.1| Arabidopsis thaliana AT5g15400/T20K14_10 mRNA, complete sequence Length = 3451 Score = 101 bits (51), Expect = 3e-18 Identities = 192/239 (80%) Strand = Plus / Plus Query: 84 ctcgattatcttgtcaagaatcttctaaagctttatgtggatattgaattcactggctcc 143 ||||| |||||||||| |||| | || || || ||||| || ||||| ||||| || || Sbjct: 2192 ctcgagtatcttgtcaggaatttactgaaactatatgttgacattgagttcacgggttca 2251 Query: 144 catacacaattctttgacaagtttaatattcgacacaacattgctgagcttcttgagtat 203 || || || |||| ||||||||| |||||||| ||||||||||| |||||| | |||||| Sbjct: 2252 cacactcagttctatgacaagttcaatattcgccacaacattgccgagcttttagagtat 2311 Query: 204 ttatgggatgttcccagtcatcgaaatgcttggagacaaatggctaaacaagaggaaaag 263 | ||| | || || ||||| |||||||| ||||||| || || ||| | || || ||| Sbjct: 2312 ctctggcaggtgcctagtcaccgaaatgcatggagacggattgcaaaagacgaagagaag 2371 Query: 264 ggcgtctacttgaattttctgaacttccttatcaatgatagcatctatcttcttgatga 322 ||||| |||||||| || | |||||| | |||||||||||||||||||||| ||||| Sbjct: 2372 ggcgtgtacttgaacttcttaaacttcttagtcaatgatagcatctatcttctggatga 2430
>emb|BX832575.1|CNS0A1OG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH81ZD10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 3404 Score = 65.9 bits (33), Expect = 1e-07 Identities = 120/149 (80%) Strand = Plus / Plus Query: 84 ctcgattatcttgtcaagaatcttctaaagctttatgtggatattgaattcactggctcc 143 ||||| |||||||||| |||| | || || || ||||| || ||||| ||||| || || Sbjct: 2247 ctcgagtatcttgtcaggaatttactgaaactatatgttgacattgagttcacgggttca 2306 Query: 144 catacacaattctttgacaagtttaatattcgacacaacattgctgagcttcttgagtat 203 || || || |||| ||||||||| |||||||| ||||||||||| |||||| | |||||| Sbjct: 2307 cacactcagttctatgacaagttcaatattcgccacaacattgccgagcttttagagtat 2366 Query: 204 ttatgggatgttcccagtcatcgaaatgc 232 | ||| | || || ||||| |||||||| Sbjct: 2367 ctctggcaggtgcctagtcaccgaaatgc 2395 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Plus Query: 295 tcaatgatagcatctatcttcttgatga 322 |||||||||||||||||||||| ||||| Sbjct: 2456 tcaatgatagcatctatcttctggatga 2483
>emb|AL391143.1|ATT20K14 Arabidopsis thaliana DNA chromosome 5, BAC clone T20K14 (ESSA project) Length = 90176 Score = 63.9 bits (32), Expect = 6e-07 Identities = 74/88 (84%) Strand = Plus / Minus Query: 153 ttctttgacaagtttaatattcgacacaacattgctgagcttcttgagtatttatgggat 212 |||| ||||||||| |||||||| ||||||||||| |||||| | |||||| | ||| | Sbjct: 5189 ttctatgacaagttcaatattcgccacaacattgccgagcttttagagtatctctggcag 5130 Query: 213 gttcccagtcatcgaaatgcttggagac 240 || || ||||| |||||||| ||||||| Sbjct: 5129 gtgcctagtcaccgaaatgcatggagac 5102 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 261 aagggcgtctacttgaattttctgaacttccttatcaatgatagcatctatcttcttgat 320 |||||||| |||||||| || | |||||| | |||||||||||||||||||||| ||| Sbjct: 5001 aagggcgtgtacttgaacttcttaaacttcttagtcaatgatagcatctatcttctggat 4942 Query: 321 ga 322 || Sbjct: 4941 ga 4940
>emb|AL353993.1|ATF8M21 Arabidopsis thaliana DNA chromosome 5, BAC clone F8M21 (ESSA project) Length = 103996 Score = 63.9 bits (32), Expect = 6e-07 Identities = 74/88 (84%) Strand = Plus / Minus Query: 153 ttctttgacaagtttaatattcgacacaacattgctgagcttcttgagtatttatgggat 212 |||| ||||||||| |||||||| ||||||||||| |||||| | |||||| | ||| | Sbjct: 103323 ttctatgacaagttcaatattcgccacaacattgccgagcttttagagtatctctggcag 103264 Query: 213 gttcccagtcatcgaaatgcttggagac 240 || || ||||| |||||||| ||||||| Sbjct: 103263 gtgcctagtcaccgaaatgcatggagac 103236 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 261 aagggcgtctacttgaattttctgaacttccttatcaatgatagcatctatcttcttgat 320 |||||||| |||||||| || | |||||| | |||||||||||||||||||||| ||| Sbjct: 103135 aagggcgtgtacttgaacttcttaaacttcttagtcaatgatagcatctatcttctggat 103076 Query: 321 ga 322 || Sbjct: 103075 ga 103074
>gb|AC107447.5| Rattus norvegicus 4 BAC CH230-46D21 (Children's Hospital Oakland Research Institute) complete sequence Length = 133054 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 277 attttctgaacttccttatcaatgata 303 ||||||||||||||||| ||||||||| Sbjct: 32223 attttctgaacttccttgtcaatgata 32249
>gb|AC068945.7| Homo sapiens BAC clone RP11-789C1 from 4, complete sequence Length = 219476 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 148 cacaattctttgacaagtttaa 169 |||||||||||||||||||||| Sbjct: 116024 cacaattctttgacaagtttaa 116045
>emb|AJ617120.1| Nicotiana plumbaginifolia cDNA-AFLP fragment, clone Np334 Length = 172 Score = 44.1 bits (22), Expect = 0.52 Identities = 61/74 (82%) Strand = Plus / Plus Query: 126 attgaattcactggctcccatacacaattctttgacaagtttaatattcgacacaacatt 185 |||||||| || || ||||| || || |||| ||| || |||||||| || ||||||||| Sbjct: 2 attgaatttacaggatcccacactcagttctatgataaatttaatatccgccacaacatt 61 Query: 186 gctgagcttcttga 199 ||||| || ||||| Sbjct: 62 gctgaactacttga 75
>gb|AC158497.2| Medicago truncatula chromosome 2 BAC clone mth2-48e18, complete sequence Length = 146321 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 164 gtttaatattcgacacaacatt 185 |||||||||||||||||||||| Sbjct: 123976 gtttaatattcgacacaacatt 123955
>gb|U13019.1| Caenorhabditis elegans cosmid T12A2, complete sequence Length = 54118 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 ttcttgatgagagtttgaaaa 333 ||||||||||||||||||||| Sbjct: 1051 ttcttgatgagagtttgaaaa 1031
>ref|XM_387561.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07385.1) partial mRNA Length = 3255 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 175 gacacaacattgctgagcttc 195 ||||||||||||||||||||| Sbjct: 2390 gacacaacattgctgagcttc 2370
>emb|AL611949.12| Mouse DNA sequence from clone RP23-454F13 on chromosome 4, complete sequence Length = 186276 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 581 gcagcttgctggtccccagag 601 ||||||||||||||||||||| Sbjct: 43989 gcagcttgctggtccccagag 43969
>ref|NM_179356.1| Arabidopsis thaliana ATP-dependent peptidase/ ubiquitin-protein ligase/ zinc ion binding AT1G18660 transcript variant AT1G18660.2 mRNA, complete cds Length = 1897 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 attatcttgtcaagaatctt 107 |||||||||||||||||||| Sbjct: 1856 attatcttgtcaagaatctt 1837
>ref|NM_179357.1| Arabidopsis thaliana ATP-dependent peptidase/ ubiquitin-protein ligase/ zinc ion binding AT1G18660 transcript variant AT1G18660.3 mRNA, complete cds Length = 1906 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 attatcttgtcaagaatctt 107 |||||||||||||||||||| Sbjct: 1865 attatcttgtcaagaatctt 1846
>ref|NM_101724.2| Arabidopsis thaliana ATP-dependent peptidase/ ubiquitin-protein ligase/ zinc ion binding AT1G18660 transcript variant AT1G18660.1 mRNA, complete cds Length = 1998 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 attatcttgtcaagaatctt 107 |||||||||||||||||||| Sbjct: 1957 attatcttgtcaagaatctt 1938
>ref|NM_202130.1| Arabidopsis thaliana ATP-dependent peptidase/ ubiquitin-protein ligase/ zinc ion binding AT1G18660 transcript variant AT1G18660.4 mRNA, complete cds Length = 2089 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 attatcttgtcaagaatctt 107 |||||||||||||||||||| Sbjct: 2048 attatcttgtcaagaatctt 2029
>gb|BT017585.1| Zea mays clone EL01N0430A01.c mRNA sequence Length = 604 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 530 tcttccagaaatggtggaaa 549 |||||||||||||||||||| Sbjct: 127 tcttccagaaatggtggaaa 108
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 gtcatcgaaatgcttggaga 239 |||||||||||||||||||| Sbjct: 1593119 gtcatcgaaatgcttggaga 1593100
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 409 gagaggagcggttgcgcgcgtttc 432 ||||||||| |||||||||||||| Sbjct: 2421943 gagaggagccgttgcgcgcgtttc 2421920
>ref|XM_954578.1| Neurospora crassa OR74A hypothetical protein (NCU08128.1) partial mRNA Length = 1689 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tttgatatgaagctcgcaaa 475 |||||||||||||||||||| Sbjct: 1573 tttgatatgaagctcgcaaa 1592
>ref|XM_328833.1| Neurospora crassa OR74A hypothetical protein (NCU08128.1) partial mRNA Length = 1689 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tttgatatgaagctcgcaaa 475 |||||||||||||||||||| Sbjct: 1573 tttgatatgaagctcgcaaa 1592
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 409 gagaggagcggttgcgcgcgtttc 432 ||||||||| |||||||||||||| Sbjct: 3637089 gagaggagccgttgcgcgcgtttc 3637066
>gb|AC124710.4| Mus musculus BAC clone RP24-92A2 from chromosome 1, complete sequence Length = 162618 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 acttgaattttctgaacttcctta 294 |||| ||||||||||||||||||| Sbjct: 109870 actttaattttctgaacttcctta 109893
>gb|AC011809.2| Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence Length = 108767 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 attatcttgtcaagaatctt 107 |||||||||||||||||||| Sbjct: 104030 attatcttgtcaagaatctt 104049
>gb|AC098587.5| Homo sapiens BAC clone RP11-231C18 from 4, complete sequence Length = 132164 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 aaaggaaatagaggctgaaa 366 |||||||||||||||||||| Sbjct: 73324 aaaggaaatagaggctgaaa 73343
>gb|AC101663.10| Mus musculus chromosome 1, clone RP23-37L1, complete sequence Length = 192592 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 271 acttgaattttctgaacttcctta 294 |||| ||||||||||||||||||| Sbjct: 171233 actttaattttctgaacttcctta 171210
>emb|AL591424.12| Human DNA sequence from clone RP11-424E7 on chromosome 9 Contains the 3' end of the CACNA1B gene for alpha 1B subunit of L type voltage-dependent calcium channel, a pseudogene similar to part of interleukin 9 receptor (ILR9), a tubulin, beta polypeptide 4, member Q (TUBB4Q) pseudogene and five CpG islands, complete sequence Length = 201853 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ggatgccgcaaagaagaggc 41 |||||||||||||||||||| Sbjct: 183597 ggatgccgcaaagaagaggc 183578
>emb|AL034405.16|HS537K23 Human DNA sequence from clone RP4-537K23 on chromosome Xq25-26.1 Contains the 3' end of the ZDHHC9 gene for zinc finger, DHHC domain containing 9 (CGI-89, ZNF379), a novel gene, a sal-like family pseudogene, the SDCCAG16 gene for serologically defined colon cancer antigen 16 (NY-CO-16), the 5' UTR of a novel gene (FLHJ11362) and seven CpG islands, complete sequence Length = 156589 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 aaaggaaatagaggctgaaa 366 |||||||||||||||||||| Sbjct: 5090 aaaggaaatagaggctgaaa 5109
>emb|CR548612.1| Paramecium tetraurelia macronuclear largest chromosome, complete sequence Length = 984602 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ctcccatacacaattctttg 159 |||||||||||||||||||| Sbjct: 851989 ctcccatacacaattctttg 852008
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 409 gagaggagcggttgcgcgcgtttc 432 ||||||||| |||||||||||||| Sbjct: 3379797 gagaggagccgttgcgcgcgtttc 3379774
>emb|BX005348.9| Zebrafish DNA sequence from clone DKEY-245J21 in linkage group 11, complete sequence Length = 145299 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 catacacaattctttgacaa 163 |||||||||||||||||||| Sbjct: 259 catacacaattctttgacaa 240
>emb|BX323548.11| Zebrafish DNA sequence from clone DKEY-31D5 in linkage group 11, complete sequence Length = 229237 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 catacacaattctttgacaa 163 |||||||||||||||||||| Sbjct: 7129 catacacaattctttgacaa 7110
>gb|AC096717.3| Homo sapiens BAC clone RP11-10O3 from 4, complete sequence Length = 109027 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 151 aattctttgacaagtttaatattc 174 |||||||||||| ||||||||||| Sbjct: 17303 aattctttgacatgtttaatattc 17280
>gb|AC092134.4| Homo sapiens chromosome 16 clone RP11-264M12, complete sequence Length = 159925 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 545 ggaaagggtggcgagcatgt 564 |||||||||||||||||||| Sbjct: 58687 ggaaagggtggcgagcatgt 58668
>gb|AC091619.3| Papio anubis clone RP41-139B7, complete sequence Length = 181302 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 cttttacttcagaacaaatt 515 |||||||||||||||||||| Sbjct: 120366 cttttacttcagaacaaatt 120347
>gb|AF169181.1|AF169181 Oryctolagus cuniculus interleukin 10 variant IL-10-C-rpt (IL-10) mRNA, partial cds; anomalously spliced Length = 429 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 572 cttcctcttgcagcttgctg 591 |||||||||||||||||||| Sbjct: 62 cttcctcttgcagcttgctg 43
>gb|AF068058.1|AF068058 Oryctolagus cuniculus interleukin-10 mRNA, complete cds Length = 1089 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 572 cttcctcttgcagcttgctg 591 |||||||||||||||||||| Sbjct: 503 cttcctcttgcagcttgctg 484
>emb|AL590633.9| Mouse DNA sequence from clone RP23-211O23 on chromosome X, complete sequence Length = 179289 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 atagcatctatcttcttgat 320 |||||||||||||||||||| Sbjct: 164252 atagcatctatcttcttgat 164271
>gb|BT001981.1| Arabidopsis thaliana expressed protein (At1g18660) mRNA, complete cds Length = 1817 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 attatcttgtcaagaatctt 107 |||||||||||||||||||| Sbjct: 1805 attatcttgtcaagaatctt 1786
>emb|BX842692.18| Zebrafish DNA sequence from clone DKEY-71H2 in linkage group 20, complete sequence Length = 190113 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 tttcatcagtcagagaatat 448 |||||||||||||||||||| Sbjct: 8108 tttcatcagtcagagaatat 8089
>dbj|AP002963.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-97I14, complete sequence Length = 183204 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 aaggaaatagaggctgaaat 367 |||||||||||||||||||| Sbjct: 131540 aaggaaatagaggctgaaat 131559
>gb|DQ304490.1| Oryctolagus cuniculus interleukin-10 (IL-10) mRNA, complete cds Length = 537 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 572 cttcctcttgcagcttgctg 591 |||||||||||||||||||| Sbjct: 457 cttcctcttgcagcttgctg 438
>gb|AF088887.1|AF088887 Oryctolagus cuniculus interleukin-10 precursor, mRNA, complete cds Length = 1227 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 572 cttcctcttgcagcttgctg 591 |||||||||||||||||||| Sbjct: 457 cttcctcttgcagcttgctg 438
>gb|AC165413.16| Mus musculus chromosome 1, clone RP23-242C11, complete sequence Length = 186380 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 aaaggaaatagaggctgaaa 366 |||||||||||||||||||| Sbjct: 71088 aaaggaaatagaggctgaaa 71069
>dbj|D84217.1| Rabbit mRNA for interleukin-10, partial cds Length = 230 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 572 cttcctcttgcagcttgctg 591 |||||||||||||||||||| Sbjct: 210 cttcctcttgcagcttgctg 191 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,462,663 Number of Sequences: 3902068 Number of extensions: 6462663 Number of successful extensions: 125902 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 125653 Number of HSP's gapped (non-prelim): 242 length of query: 601 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 578 effective length of database: 17,143,297,704 effective search space: 9908826072912 effective search space used: 9908826072912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)