ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd17p08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK070082.1| Oryza sativa (japonica cultivar-group) cDNA clon... 410 e-111
2ref|NM_188722.1| Oryza sativa (japonica cultivar-group), predic... 406 e-110
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 153 6e-34
4dbj|AP003201.3| Oryza sativa (japonica cultivar-group) genomic D... 153 6e-34
5ref|XM_465210.1| Oryza sativa (japonica cultivar-group), mRNA 56 1e-04
6dbj|AK100390.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
7dbj|AK061035.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
9dbj|AP004845.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
10gb|AY110607.1| Zea mays CL3077_1 mRNA sequence 54 4e-04
11ref|NM_191261.1| Oryza sativa (japonica cultivar-group), predic... 50 0.007
12dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
13dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
14gb|AE012222.1| Xanthomonas campestris pv. campestris str. ATCC 3... 46 0.11
15gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 46 0.11
16dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 44 0.42
17dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.42
18gb|AY593992.1| Homo sapiens upstream transcription factor 1 (USF... 42 1.7
19emb|AL591806.16| Human DNA sequence from clone RP11-544M22 on ch... 42 1.7
20emb|AL589847.6| Human DNA sequence from clone RP13-477D10 on chr... 42 1.7
21gb|AC018691.10| Homo sapiens BAC clone RP11-547F10 from 2, compl... 42 1.7
22dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
23dbj|AB017568.1| Homo sapiens USF1 gene, complete cds 42 1.7
24ref|XM_744626.1| Aspergillus fumigatus Af293 SIR2 family histone... 40 6.5
25emb|AL583840.10| Human DNA sequence from clone RP11-438N24 on ch... 40 6.5
26emb|AL589665.4| Human DNA sequence from clone RP11-123D12 on chr... 40 6.5
27emb|AL390036.17| Human DNA sequence from clone RP11-356N1 on chr... 40 6.5
28emb|AL354796.21| Human DNA sequence from clone RP11-145E17 on ch... 40 6.5
29gb|AC016939.8| Homo sapiens X BAC RP5-1014O16 (Roswell Park Canc... 40 6.5
30gb|DQ027015.1| Chlamydomonas reinhardtii MCD1 (MCD1) mRNA, compl... 40 6.5
31gb|DQ397553.1| Cenarchaeum symbiosum clone C07E08, complete sequ... 40 6.5
32gb|AC108051.3| Homo sapiens BAC clone RP11-332D2 from 2, complet... 40 6.5
33dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 6.5
34gb|AC007372.4|AC007372 Homo sapiens chromosome 14 BAC containing... 40 6.5
35gb|AC007157.6|AC007157 Homo sapiens, clone hRPK.78_A_1, complete... 40 6.5
36emb|AL049837.4|CNS0000F Human chromosome 14 DNA sequence BAC R-9... 40 6.5
37gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.5 
>dbj|AK070082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044E02, full
           insert sequence
          Length = 960

 Score =  410 bits (207), Expect = e-111
 Identities = 314/350 (89%)
 Strand = Plus / Plus

                                                                       
Query: 129 cgctgccggtgatgaagctggggacgctgctgctgcggacgctgtccaagcctatcgcca 188
           |||||||||||  ||||||||||||||||  ||||||||||||||||||||| |||||||
Sbjct: 109 cgctgccggtggcgaagctggggacgctggcgctgcggacgctgtccaagcccatcgcca 168

                                                                       
Query: 189 accgcctcaagagccaggcagccgtccaccccaagtttcgcgacttcatcatcagcatcg 248
            ||||||||||| |||||| ||||||||||||||||| ||| ||||||||||| ||||||
Sbjct: 169 gccgcctcaagaaccaggccgccgtccaccccaagttccgcaacttcatcatctgcatcg 228

                                                                       
Query: 249 cccagacaaaccatcgtatcactacaaggatacaaaggcgcatttatgggcatgctacta 308
           | ||||  ||||||||| | ||||||||||||||||||||||||||||||||||| ||  
Sbjct: 229 cgcagattaaccatcgtgttactacaaggatacaaaggcgcatttatgggcatgcaacag 288

                                                                       
Query: 309 atgtggctatcagacctttagatgaggagaaggcagtacaagttgctacagatctcattg 368
           ||||||  |||| ||||||| |||||||||| || ||||||| |||||| ||||||||||
Sbjct: 289 atgtggaaatcacacctttaaatgaggagaaagctgtacaagctgctacggatctcattg 348

                                                                       
Query: 369 gagaaggcttcatcttttcggttgctgtcgctgctttaattttcgaggtgcaaaggagtg 428
           |||||||||| || |||||||||||||| |||||||||||||| ||||||||||| | ||
Sbjct: 349 gagaaggctttattttttcggttgctgttgctgctttaatttttgaggtgcaaagaaatg 408

                                                             
Query: 429 ctaggtcagaggctagaaaggaggaagctcgtnaacaggaacttgaggaa 478
           | |||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 409 caaggtcagaggctaggaaggaggaagctcgtaaacaggaacttgaggaa 458
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>ref|NM_188722.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 720

 Score =  406 bits (205), Expect = e-110
 Identities = 312/348 (89%)
 Strand = Plus / Plus

                                                                       
Query: 129 cgctgccggtgatgaagctggggacgctgctgctgcggacgctgtccaagcctatcgcca 188
           |||||||||||  ||||||||||||||||  ||||||||||||||||||||| |||||||
Sbjct: 209 cgctgccggtggcgaagctggggacgctggcgctgcggacgctgtccaagcccatcgcca 268

                                                                       
Query: 189 accgcctcaagagccaggcagccgtccaccccaagtttcgcgacttcatcatcagcatcg 248
            ||||||||||| |||||| ||||||||||||||||| ||| ||||||||||| ||||||
Sbjct: 269 gccgcctcaagaaccaggccgccgtccaccccaagttccgcaacttcatcatctgcatcg 328

                                                                       
Query: 249 cccagacaaaccatcgtatcactacaaggatacaaaggcgcatttatgggcatgctacta 308
           | ||||  ||||||||| | ||||||||||||||||||||||||||||||||||| ||  
Sbjct: 329 cgcagattaaccatcgtgttactacaaggatacaaaggcgcatttatgggcatgcaacag 388

                                                                       
Query: 309 atgtggctatcagacctttagatgaggagaaggcagtacaagttgctacagatctcattg 368
           ||||||  |||| ||||||| |||||||||| || ||||||| |||||| ||||||||||
Sbjct: 389 atgtggaaatcacacctttaaatgaggagaaagctgtacaagctgctacggatctcattg 448

                                                                       
Query: 369 gagaaggcttcatcttttcggttgctgtcgctgctttaattttcgaggtgcaaaggagtg 428
           |||||||||| || |||||||||||||| |||||||||||||| ||||||||||| | ||
Sbjct: 449 gagaaggctttattttttcggttgctgttgctgctttaatttttgaggtgcaaagaaatg 508

                                                           
Query: 429 ctaggtcagaggctagaaaggaggaagctcgtnaacaggaacttgagg 476
           | |||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 509 caaggtcagaggctaggaaggaggaagctcgtaaacaggaacttgagg 556
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  153 bits (77), Expect = 6e-34
 Identities = 110/121 (90%)
 Strand = Plus / Plus

                                                                           
Query: 129     cgctgccggtgatgaagctggggacgctgctgctgcggacgctgtccaagcctatcgcca 188
               |||||||||||  ||||||||||||||||  ||||||||||||||||||||| |||||||
Sbjct: 7851795 cgctgccggtggcgaagctggggacgctggcgctgcggacgctgtccaagcccatcgcca 7851854

                                                                           
Query: 189     accgcctcaagagccaggcagccgtccaccccaagtttcgcgacttcatcatcagcatcg 248
                ||||||||||| |||||| ||||||||||||||||| ||| ||||||||||| ||||||
Sbjct: 7851855 gccgcctcaagaaccaggccgccgtccaccccaagttccgcaacttcatcatctgcatcg 7851914

                
Query: 249     c 249
               |
Sbjct: 7851915 c 7851915



 Score =  147 bits (74), Expect = 4e-32
 Identities = 119/134 (88%)
 Strand = Plus / Plus

                                                                           
Query: 257     aaccatcgtatcactacaaggatacaaaggcgcatttatgggcatgctactaatgtggct 316
               ||||||||| | ||||||||||||||||||||||||||||||||||| ||  ||||||  
Sbjct: 7852773 aaccatcgtgttactacaaggatacaaaggcgcatttatgggcatgcaacagatgtggaa 7852832

                                                                           
Query: 317     atcagacctttagatgaggagaaggcagtacaagttgctacagatctcattggagaaggc 376
               |||| ||||||| |||||||||| || ||||||| |||||| ||||||||||||||||||
Sbjct: 7852833 atcacacctttaaatgaggagaaagctgtacaagctgctacggatctcattggagaaggc 7852892

                             
Query: 377     ttcatcttttcggt 390
               || || ||||||||
Sbjct: 7852893 tttattttttcggt 7852906



 Score =  125 bits (63), Expect = 1e-25
 Identities = 86/94 (91%)
 Strand = Plus / Plus

                                                                           
Query: 383     ttttcggttgctgtcgctgctttaattttcgaggtgcaaaggagtgctaggtcagaggct 442
               |||| ||||||||| |||||||||||||| ||||||||||| | ||| ||||||||||||
Sbjct: 7853058 ttttaggttgctgttgctgctttaatttttgaggtgcaaagaaatgcaaggtcagaggct 7853117

                                                 
Query: 443     agaaaggaggaagctcgtnaacaggaacttgagg 476
               || ||||||||||||||| |||||||||||||||
Sbjct: 7853118 aggaaggaggaagctcgtaaacaggaacttgagg 7853151



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 213      tccaccccaagtttcgcgacttcatcatcagcatcgcccag 253
                ||||||||||||| |||| |||||||||| || ||||||||
Sbjct: 31600544 tccaccccaagttccgcggcttcatcatcggcctcgcccag 31600504
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>dbj|AP003201.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1066G12
          Length = 136263

 Score =  153 bits (77), Expect = 6e-34
 Identities = 110/121 (90%)
 Strand = Plus / Plus

                                                                         
Query: 129   cgctgccggtgatgaagctggggacgctgctgctgcggacgctgtccaagcctatcgcca 188
             |||||||||||  ||||||||||||||||  ||||||||||||||||||||| |||||||
Sbjct: 46741 cgctgccggtggcgaagctggggacgctggcgctgcggacgctgtccaagcccatcgcca 46800

                                                                         
Query: 189   accgcctcaagagccaggcagccgtccaccccaagtttcgcgacttcatcatcagcatcg 248
              ||||||||||| |||||| ||||||||||||||||| ||| ||||||||||| ||||||
Sbjct: 46801 gccgcctcaagaaccaggccgccgtccaccccaagttccgcaacttcatcatctgcatcg 46860

              
Query: 249   c 249
             |
Sbjct: 46861 c 46861



 Score =  147 bits (74), Expect = 4e-32
 Identities = 119/134 (88%)
 Strand = Plus / Plus

                                                                         
Query: 257   aaccatcgtatcactacaaggatacaaaggcgcatttatgggcatgctactaatgtggct 316
             ||||||||| | ||||||||||||||||||||||||||||||||||| ||  ||||||  
Sbjct: 47719 aaccatcgtgttactacaaggatacaaaggcgcatttatgggcatgcaacagatgtggaa 47778

                                                                         
Query: 317   atcagacctttagatgaggagaaggcagtacaagttgctacagatctcattggagaaggc 376
             |||| ||||||| |||||||||| || ||||||| |||||| ||||||||||||||||||
Sbjct: 47779 atcacacctttaaatgaggagaaagctgtacaagctgctacggatctcattggagaaggc 47838

                           
Query: 377   ttcatcttttcggt 390
             || || ||||||||
Sbjct: 47839 tttattttttcggt 47852



 Score =  125 bits (63), Expect = 1e-25
 Identities = 86/94 (91%)
 Strand = Plus / Plus

                                                                         
Query: 383   ttttcggttgctgtcgctgctttaattttcgaggtgcaaaggagtgctaggtcagaggct 442
             |||| ||||||||| |||||||||||||| ||||||||||| | ||| ||||||||||||
Sbjct: 48004 ttttaggttgctgttgctgctttaatttttgaggtgcaaagaaatgcaaggtcagaggct 48063

                                               
Query: 443   agaaaggaggaagctcgtnaacaggaacttgagg 476
             || ||||||||||||||| |||||||||||||||
Sbjct: 48064 aggaaggaggaagctcgtaaacaggaacttgagg 48097
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>ref|XM_465210.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1138

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 102/124 (82%), Gaps = 2/124 (1%)
 Strand = Plus / Plus

                                                                       
Query: 142 gaagctggggacgctgctgctgcggacgctgtccaagcctatcgccaaccgcctcaagag 201
           ||||||||||||||||  ||||  |||| |||| ||||| ||||||| ||||||||||| 
Sbjct: 229 gaagctggggacgctggcgctgaagacgatgtcgaagccgatcgccatccgcctcaagac 288

                                                                       
Query: 202 ccagg-cagccgtccaccccaagtttcgcgacttcatcatcagcatcgcccagacaaacc 260
             ||| |||||| ||||||  |||| ||| |  ||||||||| | ||||||||||||| |
Sbjct: 289 ggaggccagccg-ccaccctcagttccgccagctcatcatcaacctcgcccagacaaatc 347

               
Query: 261 atcg 264
           ||||
Sbjct: 348 atcg 351



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                       
Query: 386 tcggttgctgtcgctgctttaattttcgaggtgcaaaggagtgctaggtcagaggctaga 445
           ||||||||||  |||||| |||| || ||||||||||| || || ||||| |||||  ||
Sbjct: 473 tcggttgctggggctgctgtaatctttgaggtgcaaagaagcgcaaggtccgaggcccga 532

                          
Query: 446 aaggaggaagctcgt 460
           || ||||| ||||||
Sbjct: 533 aaagaggaggctcgt 547
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>dbj|AK100390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085P21, full
           insert sequence
          Length = 2682

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 102/124 (82%), Gaps = 2/124 (1%)
 Strand = Plus / Plus

                                                                       
Query: 142 gaagctggggacgctgctgctgcggacgctgtccaagcctatcgccaaccgcctcaagag 201
           ||||||||||||||||  ||||  |||| |||| ||||| ||||||| ||||||||||| 
Sbjct: 190 gaagctggggacgctggcgctgaagacgatgtcgaagccgatcgccatccgcctcaagac 249

                                                                       
Query: 202 ccagg-cagccgtccaccccaagtttcgcgacttcatcatcagcatcgcccagacaaacc 260
             ||| |||||| ||||||  |||| ||| |  ||||||||| | ||||||||||||| |
Sbjct: 250 ggaggccagccg-ccaccctcagttccgccagctcatcatcaacctcgcccagacaaatc 308

               
Query: 261 atcg 264
           ||||
Sbjct: 309 atcg 312



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 60/73 (82%)
 Strand = Plus / Plus

                                                                       
Query: 388 ggttgctgtcgctgctttaattttcgaggtgcaaaggagtgctaggtcagaggctagaaa 447
           ||||||||  |||||| |||| || ||||||||||| || || ||||| |||||  ||||
Sbjct: 439 ggttgctggggctgctgtaatctttgaggtgcaaagaagcgcaaggtccgaggcccgaaa 498

                        
Query: 448 ggaggaagctcgt 460
            ||||| ||||||
Sbjct: 499 agaggaggctcgt 511
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>dbj|AK061035.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-A09, full
           insert sequence
          Length = 1138

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 102/124 (82%), Gaps = 2/124 (1%)
 Strand = Plus / Plus

                                                                       
Query: 142 gaagctggggacgctgctgctgcggacgctgtccaagcctatcgccaaccgcctcaagag 201
           ||||||||||||||||  ||||  |||| |||| ||||| ||||||| ||||||||||| 
Sbjct: 229 gaagctggggacgctggcgctgaagacgatgtcgaagccgatcgccatccgcctcaagac 288

                                                                       
Query: 202 ccagg-cagccgtccaccccaagtttcgcgacttcatcatcagcatcgcccagacaaacc 260
             ||| |||||| ||||||  |||| ||| |  ||||||||| | ||||||||||||| |
Sbjct: 289 ggaggccagccg-ccaccctcagttccgccagctcatcatcaacctcgcccagacaaatc 347

               
Query: 261 atcg 264
           ||||
Sbjct: 348 atcg 351



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                       
Query: 386 tcggttgctgtcgctgctttaattttcgaggtgcaaaggagtgctaggtcagaggctaga 445
           ||||||||||  |||||| |||| || ||||||||||| || || ||||| |||||  ||
Sbjct: 473 tcggttgctggggctgctgtaatctttgaggtgcaaagaagcgcaaggtccgaggcccga 532

                          
Query: 446 aaggaggaagctcgt 460
           || ||||| ||||||
Sbjct: 533 aaagaggaggctcgt 547
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                           
Query: 142      gaagctggggacgctgctgctgcggacgctgtccaagcctatcgccaaccgcctcaaga 200
                ||||||||||||||||  ||||  |||| |||| ||||| ||||||| |||||||||||
Sbjct: 12319575 gaagctggggacgctggcgctgaagacgatgtcgaagccgatcgccatccgcctcaaga 12319633



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 60/73 (82%)
 Strand = Plus / Plus

                                                                            
Query: 388      ggttgctgtcgctgctttaattttcgaggtgcaaaggagtgctaggtcagaggctagaaa 447
                ||||||||  |||||| |||| || ||||||||||| || || ||||| |||||  ||||
Sbjct: 12320815 ggttgctggggctgctgtaatctttgaggtgcaaagaagcgcaaggtccgaggcccgaaa 12320874

                             
Query: 448      ggaggaagctcgt 460
                 ||||| ||||||
Sbjct: 12320875 agaggaggctcgt 12320887
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>dbj|AP004845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1233_A01
          Length = 98378

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                        
Query: 142   gaagctggggacgctgctgctgcggacgctgtccaagcctatcgccaaccgcctcaaga 200
             ||||||||||||||||  ||||  |||| |||| ||||| ||||||| |||||||||||
Sbjct: 81600 gaagctggggacgctggcgctgaagacgatgtcgaagccgatcgccatccgcctcaaga 81658



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 60/73 (82%)
 Strand = Plus / Plus

                                                                         
Query: 388   ggttgctgtcgctgctttaattttcgaggtgcaaaggagtgctaggtcagaggctagaaa 447
             ||||||||  |||||| |||| || ||||||||||| || || ||||| |||||  ||||
Sbjct: 82840 ggttgctggggctgctgtaatctttgaggtgcaaagaagcgcaaggtccgaggcccgaaa 82899

                          
Query: 448   ggaggaagctcgt 460
              ||||| ||||||
Sbjct: 82900 agaggaggctcgt 82912
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>gb|AY110607.1| Zea mays CL3077_1 mRNA sequence
          Length = 920

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 213 tccaccccaagtttcgcgacttcatcatcagcatcgcccagacaaaccatcgtatcacta 272
           ||||||||||||| ||||   |||||||| ||||||| ||| ||||||||||| |||| |
Sbjct: 650 tccaccccaagttccgcggtctcatcatcggcatcgcgcaggcaaaccatcgtttcacga 591

              
Query: 273 caa 275
           |||
Sbjct: 590 caa 588



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 413 gaggtgcaaaggagtgctaggtcagaggctagaaaggagga 453
           ||||||||||| |||||||||||||| || ||||| |||||
Sbjct: 450 gaggtgcaaagaagtgctaggtcagaagccagaaaagagga 410
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>ref|NM_191261.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1134

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 213 tccaccccaagtttcgcgacttcatcatcagcatcgcccag 253
           ||||||||||||| |||| |||||||||| || ||||||||
Sbjct: 800 tccaccccaagttccgcggcttcatcatcggcctcgcccag 840
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>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0503C12
          Length = 147180

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 213   tccaccccaagtttcgcgacttcatcatcagcatcgcccag 253
             ||||||||||||| |||| |||||||||| || ||||||||
Sbjct: 14276 tccaccccaagttccgcggcttcatcatcggcctcgcccag 14236
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>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0435B05
          Length = 150997

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                       
Query: 213    tccaccccaagtttcgcgacttcatcatcagcatcgcccag 253
              ||||||||||||| |||| |||||||||| || ||||||||
Sbjct: 113567 tccaccccaagttccgcggcttcatcatcggcctcgcccag 113527
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>gb|AE012222.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 130
            of 460 of the complete genome
          Length = 11629

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 123  tggccgcgctgccggtgatgaagctgg 149
            |||||||||||| ||||||||||||||
Sbjct: 3630 tggccgcgctgctggtgatgaagctgg 3604
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 123     tggccgcgctgccggtgatgaagctgg 149
               |||||||||||| ||||||||||||||
Sbjct: 3605672 tggccgcgctgctggtgatgaagctgg 3605698
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>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023
          Length = 2661830

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 139     gatgaagctggggacgctgctg 160
               ||||||||||||||||||||||
Sbjct: 1513747 gatgaagctggggacgctgctg 1513726
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 151     gacgctgctgctgcggacgctg 172
               ||||||||||||||||||||||
Sbjct: 6246589 gacgctgctgctgcggacgctg 6246568
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>gb|AY593992.1| Homo sapiens upstream transcription factor 1 (USF1) gene, complete
            cds
          Length = 9549

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 367  tggagaaggcttcatcttttc 387
            |||||||||||||||||||||
Sbjct: 6744 tggagaaggcttcatcttttc 6764
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>emb|AL591806.16| Human DNA sequence from clone RP11-544M22 on chromosome 1 Contains the
             3' end of a novel gene, the 5' end of the ITLN2 gene for
             intelectin 2, the F11R gene for F11 receptor, the gene for
             KAT protein, the USF1 gene for upstream transcription
             factor 1, the gene for a novel protein, the PVRL4 gene for
             poliovirus receptor-related 4, a novel gene, the gene for
             a novel protein (MGC33338), the PFDN2 gene for prefoldin
             2, the NIT1 gene for nitrilase 1 and the DEDD gene for
             death effector domain containing, complete sequence
          Length = 200822

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 367   tggagaaggcttcatcttttc 387
             |||||||||||||||||||||
Sbjct: 94122 tggagaaggcttcatcttttc 94102
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>emb|AL589847.6| Human DNA sequence from clone RP13-477D10 on chromosome X, complete
             sequence
          Length = 103196

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 419   caaaggagtgctaggtcagag 439
             |||||||||||||||||||||
Sbjct: 85098 caaaggagtgctaggtcagag 85118
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>gb|AC018691.10| Homo sapiens BAC clone RP11-547F10 from 2, complete sequence
          Length = 187298

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 366   ttggagaaggcttcatctttt 386
             |||||||||||||||||||||
Sbjct: 63796 ttggagaaggcttcatctttt 63776
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>dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0705A04
          Length = 182468

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 60/73 (82%)
 Strand = Plus / Plus

                                                                        
Query: 388  ggttgctgtcgctgctttaattttcgaggtgcaaaggagtgctaggtcagaggctagaaa 447
            ||||||||  |||||| |||| || ||||||||||| || || ||||| |||||  ||||
Sbjct: 952  ggttgctggggctgctgtaatctttgaggtgcaaagaagcgcaaggtccgaggcccgaaa 1011

                         
Query: 448  ggaggaagctcgt 460
             ||||| ||||||
Sbjct: 1012 agaggaggctcgt 1024
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>dbj|AB017568.1| Homo sapiens USF1 gene, complete cds
          Length = 9724

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 367  tggagaaggcttcatcttttc 387
            |||||||||||||||||||||
Sbjct: 8482 tggagaaggcttcatcttttc 8502
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>ref|XM_744626.1| Aspergillus fumigatus Af293 SIR2 family histone deacetylase
           (Afu2g05900) partial mRNA
          Length = 1278

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 462 aacaggaacttgaggaactg 481
           ||||||||||||||||||||
Sbjct: 827 aacaggaacttgaggaactg 846
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>emb|AL583840.10| Human DNA sequence from clone RP11-438N24 on chromosome 6, complete
             sequence
          Length = 82865

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   tgatgaagctggggacgctg 157
             ||||||||||||||||||||
Sbjct: 10638 tgatgaagctggggacgctg 10657
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>emb|AL589665.4| Human DNA sequence from clone RP11-123D12 on chromosome 1 Contains a
              neural precursor cell expressed developmentally
              down-regulated 5 (NEDD5) pseudogene, complete sequence
          Length = 132623

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    tgatgaagctggggacgctg 157
              ||||||||||||||||||||
Sbjct: 126354 tgatgaagctggggacgctg 126373
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>emb|AL390036.17| Human DNA sequence from clone RP11-356N1 on chromosome 1 Contains the
             3' end of a novel gene, a novel gene, the 3' end of the
             SLC25A24 gene for solute carrier family 25 (mitochondrial
             carrier; phosphate carrier) member 24 and two CpG islands,
             complete sequence
          Length = 183037

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   tgatgaagctggggacgctg 157
             ||||||||||||||||||||
Sbjct: 36644 tgatgaagctggggacgctg 36625
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>emb|AL354796.21| Human DNA sequence from clone RP11-145E17 on chromosome 9 Contains the
              5'end of a novel gene (FLJ00318), a novel gene and two CpG
              islands, complete sequence
          Length = 156466

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 329    gatgaggagaaggcagtaca 348
              ||||||||||||||||||||
Sbjct: 146684 gatgaggagaaggcagtaca 146703
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>gb|AC016939.8| Homo sapiens X BAC RP5-1014O16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 118440

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   tgatgaagctggggacgctg 157
             ||||||||||||||||||||
Sbjct: 41900 tgatgaagctggggacgctg 41881
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>gb|DQ027015.1| Chlamydomonas reinhardtii MCD1 (MCD1) mRNA, complete cds
          Length = 5213

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  gctgctgctgcggacgctgt 173
            ||||||||||||||||||||
Sbjct: 3391 gctgctgctgcggacgctgt 3372
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>gb|DQ397553.1| Cenarchaeum symbiosum clone C07E08, complete sequence
          Length = 40832

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 125   gccgcgctgccggtgatgaagctg 148
             ||||||||||||||||| ||||||
Sbjct: 10172 gccgcgctgccggtgataaagctg 10149
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>gb|AC108051.3| Homo sapiens BAC clone RP11-332D2 from 2, complete sequence
          Length = 119875

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  tgatgaagctggggacgctg 157
            ||||||||||||||||||||
Sbjct: 4973 tgatgaagctggggacgctg 4954
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    tggccgcgctgccggtgatg 142
              ||||||||||||||||||||
Sbjct: 322963 tggccgcgctgccggtgatg 322982
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>gb|AC007372.4|AC007372 Homo sapiens chromosome 14 BAC containing gene for type 2 iodothyronine
             deiodinase (DIO2) gene, complete CDS, complete sequence
          Length = 154796

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   tgatgaagctggggacgctg 157
             ||||||||||||||||||||
Sbjct: 76860 tgatgaagctggggacgctg 76841
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>gb|AC007157.6|AC007157 Homo sapiens, clone hRPK.78_A_1, complete sequence
          Length = 152937

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    tgatgaagctggggacgctg 157
              ||||||||||||||||||||
Sbjct: 139732 tgatgaagctggggacgctg 139751
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>emb|AL049837.4|CNS0000F Human chromosome 14 DNA sequence BAC R-959A22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 168677

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   tgatgaagctggggacgctg 157
             ||||||||||||||||||||
Sbjct: 98292 tgatgaagctggggacgctg 98311
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 123     tggccgcgctgccggtgatg 142
               ||||||||||||||||||||
Sbjct: 4660569 tggccgcgctgccggtgatg 4660588


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,382,739
Number of Sequences: 3902068
Number of extensions: 3382739
Number of successful extensions: 56740
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56417
Number of HSP's gapped (non-prelim): 323
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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