ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd17p06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome... 234 2e-58
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 234 2e-58
3dbj|AK058340.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 2e-58
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 234 2e-58
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 210 3e-51
7emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa... 210 3e-51
8gb|AY108120.1| Zea mays PCO106809 mRNA sequence 176 5e-41
9gb|BT019015.1| Zea mays clone Contig510.F mRNA sequence 161 3e-36
10gb|AY105685.1| Zea mays PCO106810 mRNA sequence 151 3e-33
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
12dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
13dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
14emb|AL137164.3|CNS01DWF Human chromosome 14 DNA sequence BAC R-8... 46 0.11
15ref|NM_125998.3| Arabidopsis thaliana RNA binding / nucleic acid... 44 0.45
16emb|BX833141.1|CNS09Z0Y Arabidopsis thaliana Full-length cDNA Co... 44 0.45
17gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, co... 44 0.45
18dbj|AB011474.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.45
19emb|AL929119.19| Zebrafish DNA sequence from clone CH211-214G8 i... 44 0.45
20gb|AC138657.1| Homo sapiens BAC clone RP11-141I1 from 4, complet... 42 1.8
21dbj|AP006393.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.8
22dbj|AP004474.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.8
23gb|AC024877.2| Caenorhabditis elegans cosmid Y95B8A, complete se... 40 7.0
24ref|XM_381865.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 7.0
25gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
26emb|AL390197.19| Human DNA sequence from clone RP11-190F19 on ch... 40 7.0
27gb|AF530057.1| Turnip mosaic virus strain L polyprotein precurso... 40 7.0
28emb|AL162753.2|NMA2Z2491 Neisseria meningitidis serogroup A stra... 40 7.0
29emb|BX538138.1|HSM806339 Homo sapiens genomic DNA; cDNA DKFZp686... 40 7.0
30gb|AC025069.9| Homo sapiens chromosome 11, clone RP11-132I17, co... 40 7.0
31gb|AC021824.7| Homo sapiens chromosome 11, clone RP11-220C23, co... 40 7.0
32gb|AC099785.2| Homo sapiens chromosome 1 clone RP11-435I3, compl... 40 7.0
33gb|AC118471.2| Homo sapiens chromosome 1 clone RP11-377O11, comp... 40 7.0
34gb|AC105750.2| Homo sapiens chromosome 3 clone RP11-776K4, compl... 40 7.0
35gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 7.0
36gb|AC020591.7| Homo sapiens BAC clone RP11-150O15 from 2, comple... 40 7.0
37gb|AF539411.1| Turnip mosaic virus TuMV-SD5 coat protein (CP) mR... 40 7.0
38gb|AC156630.6| Mus musculus BAC clone RP24-556B7 from chromosome... 40 7.0
39dbj|AB180023.1| Turnip mosaic virus gene for polyprotein, partia... 40 7.0
40dbj|AB180021.1| Turnip mosaic virus gene for polyprotein, partia... 40 7.0
41dbj|AB180016.1| Turnip mosaic virus gene for polyprotein, partia... 40 7.0
42emb|AJ297629.2|TMO297629 Turnip mosaic virus genomic RNA for par... 40 7.0
43dbj|AP001892.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.0
44emb|CT010575.15| Mouse DNA sequence from clone RP23-217J21 on ch... 40 7.0
45gb|AC015720.20| Homo sapiens chromosome 15, clone RP11-151H2, co... 40 7.0
46dbj|AB076553.1| Turnip mosaic virus CP gene for polyprotein, par... 40 7.0 
>gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0019B24, complete sequence
          Length = 162385

 Score =  234 bits (118), Expect = 2e-58
 Identities = 187/209 (89%), Gaps = 1/209 (0%)
 Strand = Plus / Plus

                                                                         
Query: 37    acatcatcaagttctttgtggagtacgagctgacggaggacaatgtgcacatcgcgtacc 96
             ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 69478 acatcatcaagttctttgtggagtatgagctgacggaggaaaatgtgcacatcgcgtacc 69537

                                                                         
Query: 97    gctcggnatgggaaggccactggcgaggcctttgtggagttcccgacggccgaggttgca 156
             | ||   |||| ||||||||||| || ||||||||||||||||| || || |||||||||
Sbjct: 69538 g-tccagatggtaaggccactggagaagcctttgtggagttcccaacagcagaggttgca 69596

                                                                         
Query: 157   aagactgccatgtgcaaggataagatgaccatcggtaccaggtacgtggagctgttcccc 216
             ||||| |||||||||||||| ||||||||||| || || |||||||||||||||||||| 
Sbjct: 69597 aagacagccatgtgcaaggacaagatgaccattgggacaaggtacgtggagctgttccca 69656

                                          
Query: 217   tcgactcccgaggaggcgagcagggcgaa 245
             || || || |||||||| |||||||||||
Sbjct: 69657 tcaaccccagaggaggccagcagggcgaa 69685
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  234 bits (118), Expect = 2e-58
 Identities = 187/209 (89%), Gaps = 1/209 (0%)
 Strand = Plus / Plus

                                                                           
Query: 37      acatcatcaagttctttgtggagtacgagctgacggaggacaatgtgcacatcgcgtacc 96
               ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 1554942 acatcatcaagttctttgtggagtatgagctgacggaggaaaatgtgcacatcgcgtacc 1555001

                                                                           
Query: 97      gctcggnatgggaaggccactggcgaggcctttgtggagttcccgacggccgaggttgca 156
               | ||   |||| ||||||||||| || ||||||||||||||||| || || |||||||||
Sbjct: 1555002 g-tccagatggtaaggccactggagaagcctttgtggagttcccaacagcagaggttgca 1555060

                                                                           
Query: 157     aagactgccatgtgcaaggataagatgaccatcggtaccaggtacgtggagctgttcccc 216
               ||||| |||||||||||||| ||||||||||| || || |||||||||||||||||||| 
Sbjct: 1555061 aagacagccatgtgcaaggacaagatgaccattgggacaaggtacgtggagctgttccca 1555120

                                            
Query: 217     tcgactcccgaggaggcgagcagggcgaa 245
               || || || |||||||| |||||||||||
Sbjct: 1555121 tcaaccccagaggaggccagcagggcgaa 1555149



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 479      ttttttgaaaaaatgcactt 498
                ||||||||||||||||||||
Sbjct: 22352321 ttttttgaaaaaatgcactt 22352340
to top
>dbj|AK058340.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-D07, full
            insert sequence
          Length = 1401

 Score =  234 bits (118), Expect = 2e-58
 Identities = 187/209 (89%), Gaps = 1/209 (0%)
 Strand = Plus / Plus

                                                                        
Query: 37   acatcatcaagttctttgtggagtacgagctgacggaggacaatgtgcacatcgcgtacc 96
            ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 985  acatcatcaagttctttgtggagtatgagctgacggaggaaaatgtgcacatcgcgtacc 1044

                                                                        
Query: 97   gctcggnatgggaaggccactggcgaggcctttgtggagttcccgacggccgaggttgca 156
            | ||   |||| ||||||||||| || ||||||||||||||||| || || |||||||||
Sbjct: 1045 g-tccagatggtaaggccactggagaagcctttgtggagttcccaacagcagaggttgca 1103

                                                                        
Query: 157  aagactgccatgtgcaaggataagatgaccatcggtaccaggtacgtggagctgttcccc 216
            ||||| |||||||||||||| ||||||||||| || || |||||||||||||||||||| 
Sbjct: 1104 aagacagccatgtgcaaggacaagatgaccattgggacaaggtacgtggagctgttccca 1163

                                         
Query: 217  tcgactcccgaggaggcgagcagggcgaa 245
            || || || |||||||| |||||||||||
Sbjct: 1164 tcaaccccagaggaggccagcagggcgaa 1192
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  234 bits (118), Expect = 2e-58
 Identities = 187/209 (89%), Gaps = 1/209 (0%)
 Strand = Plus / Plus

                                                                           
Query: 37      acatcatcaagttctttgtggagtacgagctgacggaggacaatgtgcacatcgcgtacc 96
               ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 1552663 acatcatcaagttctttgtggagtatgagctgacggaggaaaatgtgcacatcgcgtacc 1552722

                                                                           
Query: 97      gctcggnatgggaaggccactggcgaggcctttgtggagttcccgacggccgaggttgca 156
               | ||   |||| ||||||||||| || ||||||||||||||||| || || |||||||||
Sbjct: 1552723 g-tccagatggtaaggccactggagaagcctttgtggagttcccaacagcagaggttgca 1552781

                                                                           
Query: 157     aagactgccatgtgcaaggataagatgaccatcggtaccaggtacgtggagctgttcccc 216
               ||||| |||||||||||||| ||||||||||| || || |||||||||||||||||||| 
Sbjct: 1552782 aagacagccatgtgcaaggacaagatgaccattgggacaaggtacgtggagctgttccca 1552841

                                            
Query: 217     tcgactcccgaggaggcgagcagggcgaa 245
               || || || |||||||| |||||||||||
Sbjct: 1552842 tcaaccccagaggaggccagcagggcgaa 1552870



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 479      ttttttgaaaaaatgcactt 498
                ||||||||||||||||||||
Sbjct: 22662232 ttttttgaaaaaatgcactt 22662251
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  210 bits (106), Expect = 3e-51
 Identities = 184/209 (88%), Gaps = 1/209 (0%)
 Strand = Plus / Plus

                                                                           
Query: 37      acatcatcaagttctttgtggagtacgagctgacggaggacaatgtgcacatcgcgtacc 96
               ||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct: 1497955 acatcatcaagttctttgtggagtacgagctgacggacgaaaatgtgcacatcgtgtacc 1498014

                                                                           
Query: 97      gctcggnatgggaaggccactggcgaggcctttgtggagttcccgacggccgaggttgca 156
               | ||   |||| ||||||||||| || |||| ||||||||||||||| || |||||||  
Sbjct: 1498015 g-tccagatggtaaggccactggagaagcctatgtggagttcccgacagcagaggttgtg 1498073

                                                                           
Query: 157     aagactgccatgtgcaaggataagatgaccatcggtaccaggtacgtggagctgttcccc 216
               ||||| |||||||||||||| ||||||||||| || || |||||||||||||||||||| 
Sbjct: 1498074 aagacagccatgtgcaaggacaagatgaccattgggacaaggtacgtggagctgttccca 1498133

                                            
Query: 217     tcgactcccgaggaggcgagcagggcgaa 245
               || || || |||||||| |||||||||||
Sbjct: 1498134 tcaaccccagaggaggccagcagggcgaa 1498162
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  210 bits (106), Expect = 3e-51
 Identities = 184/209 (88%), Gaps = 1/209 (0%)
 Strand = Plus / Plus

                                                                           
Query: 37      acatcatcaagttctttgtggagtacgagctgacggaggacaatgtgcacatcgcgtacc 96
               ||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct: 1497955 acatcatcaagttctttgtggagtacgagctgacggacgaaaatgtgcacatcgtgtacc 1498014

                                                                           
Query: 97      gctcggnatgggaaggccactggcgaggcctttgtggagttcccgacggccgaggttgca 156
               | ||   |||| ||||||||||| || |||| ||||||||||||||| || |||||||  
Sbjct: 1498015 g-tccagatggtaaggccactggagaagcctatgtggagttcccgacagcagaggttgtg 1498073

                                                                           
Query: 157     aagactgccatgtgcaaggataagatgaccatcggtaccaggtacgtggagctgttcccc 216
               ||||| |||||||||||||| ||||||||||| || || |||||||||||||||||||| 
Sbjct: 1498074 aagacagccatgtgcaaggacaagatgaccattgggacaaggtacgtggagctgttccca 1498133

                                            
Query: 217     tcgactcccgaggaggcgagcagggcgaa 245
               || || || |||||||| |||||||||||
Sbjct: 1498134 tcaaccccagaggaggccagcagggcgaa 1498162
to top
>emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 183385

 Score =  210 bits (106), Expect = 3e-51
 Identities = 184/209 (88%), Gaps = 1/209 (0%)
 Strand = Plus / Minus

                                                                          
Query: 37     acatcatcaagttctttgtggagtacgagctgacggaggacaatgtgcacatcgcgtacc 96
              ||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct: 127777 acatcatcaagttctttgtggagtacgagctgacggacgaaaatgtgcacatcgtgtacc 127718

                                                                          
Query: 97     gctcggnatgggaaggccactggcgaggcctttgtggagttcccgacggccgaggttgca 156
              | ||   |||| ||||||||||| || |||| ||||||||||||||| || |||||||  
Sbjct: 127717 g-tccagatggtaaggccactggagaagcctatgtggagttcccgacagcagaggttgtg 127659

                                                                          
Query: 157    aagactgccatgtgcaaggataagatgaccatcggtaccaggtacgtggagctgttcccc 216
              ||||| |||||||||||||| ||||||||||| || || |||||||||||||||||||| 
Sbjct: 127658 aagacagccatgtgcaaggacaagatgaccattgggacaaggtacgtggagctgttccca 127599

                                           
Query: 217    tcgactcccgaggaggcgagcagggcgaa 245
              || || || |||||||| |||||||||||
Sbjct: 127598 tcaaccccagaggaggccagcagggcgaa 127570
to top
>gb|AY108120.1| Zea mays PCO106809 mRNA sequence
          Length = 1052

 Score =  176 bits (89), Expect = 5e-41
 Identities = 180/209 (86%), Gaps = 1/209 (0%)
 Strand = Plus / Plus

                                                                       
Query: 37  acatcatcaagttctttgtggagtacgagctgacggaggacaatgtgcacatcgcgtacc 96
           ||||||||||||||||  |||||||||||||| | ||||| || ||||| ||||| ||||
Sbjct: 790 acatcatcaagttcttcctggagtacgagctggcagaggagaacgtgcatatcgcctacc 849

                                                                       
Query: 97  gctcggnatgggaaggccactggcgaggcctttgtggagttcccgacggccgaggttgca 156
           |||| | ||||||||||||| || || ||||| || ||||| ||||| || || || || 
Sbjct: 850 gctccg-atgggaaggccacgggtgaagccttcgttgagtttccgacagctgaagtcgcg 908

                                                                       
Query: 157 aagactgccatgtgcaaggataagatgaccatcggtaccaggtacgtggagctgttcccc 216
           ||||| |||||||||||||||||||||||||| || || |||||||||||||||||||| 
Sbjct: 909 aagacggccatgtgcaaggataagatgaccattgggacgaggtacgtggagctgttcccg 968

                                        
Query: 217 tcgactcccgaggaggcgagcagggcgaa 245
           ||||| || |||||||| |||||||||||
Sbjct: 969 tcgaccccagaggaggccagcagggcgaa 997
to top
>gb|BT019015.1| Zea mays clone Contig510.F mRNA sequence
          Length = 1222

 Score =  161 bits (81), Expect = 3e-36
 Identities = 178/209 (85%), Gaps = 1/209 (0%)
 Strand = Plus / Plus

                                                                        
Query: 37   acatcatcaagttctttgtggagtacgagctgacggaggacaatgtgcacatcgcgtacc 96
            ||||||||||||||||  |||||||||||||| | ||||| || ||||| ||||| ||||
Sbjct: 794  acatcatcaagttcttcctggagtacgagctggcagaggagaacgtgcatatcgcctacc 853

                                                                        
Query: 97   gctcggnatgggaaggccactggcgaggcctttgtggagttcccgacggccgaggttgca 156
            |||| | ||||||||||||| || || ||||| || ||||| ||||| || || || || 
Sbjct: 854  gctccg-atgggaaggccacgggtgaagccttcgttgagtttccgacagcggaagtcgcg 912

                                                                        
Query: 157  aagactgccatgtgcaaggataagatgaccatcggtaccaggtacgtggagctgttcccc 216
            ||||| ||||||||||||||||||||||| || || || ||||||| |||||||||||| 
Sbjct: 913  aagacggccatgtgcaaggataagatgactattgggacgaggtacggggagctgttcccg 972

                                         
Query: 217  tcgactcccgaggaggcgagcagggcgaa 245
            ||||| || |||||||| |||||||||||
Sbjct: 973  tcgaccccagaggaggccagcagggcgaa 1001
to top
>gb|AY105685.1| Zea mays PCO106810 mRNA sequence
          Length = 1270

 Score =  151 bits (76), Expect = 3e-33
 Identities = 176/208 (84%), Gaps = 1/208 (0%)
 Strand = Plus / Plus

                                                                        
Query: 37   acatcatcaagttctttgtggagtacgagctgacggaggacaatgtgcacatcgcgtacc 96
            ||||||||||||||||  ||||||| |||||||| ||||| |||||||| || |||  ||
Sbjct: 809  acatcatcaagttcttcctggagtatgagctgacagaggagaatgtgcatattgcgatcc 868

                                                                        
Query: 97   gctcggnatgggaaggccactggcgaggcctttgtggagttcccgacggccgaggttgca 156
            |||| | ||||||| || || || || |||||||| |||||||| || || || ||||| 
Sbjct: 869  gctcag-atgggaaagctaccggtgaagcctttgttgagttcccaacagctgaagttgcc 927

                                                                        
Query: 157  aagactgccatgtgcaaggataagatgaccatcggtaccaggtacgtggagctgttcccc 216
            ||||| || |||||||||||||||||||| ||||| || ||||| |||||||||||||| 
Sbjct: 928  aagacggcgatgtgcaaggataagatgactatcgggacgaggtatgtggagctgttcccg 987

                                        
Query: 217  tcgactcccgaggaggcgagcagggcga 244
            || || || |||||||||||||||||||
Sbjct: 988  tctaccccagaggaggcgagcagggcga 1015
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                            
Query: 37       acatcatcaagttctttgtggagtacgagctgacggaggacaatgtgcacatcgcgtacc 96
                ||||||||||||||||||| ||||| ||| |||||||||| |||||||||| ||||||||
Sbjct: 35838503 acatcatcaagttctttgtagagtatgagttgacggaggaaaatgtgcacaccgcgtacc 35838562

                 
Query: 97       g 97
                |
Sbjct: 35838563 g 35838563



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                            
Query: 150      ggttgcaaagactgccatgtgcaaggataagatgaccatcggtaccaggtacgtggagct 209
                |||||| ||||| ||||| |||||||| ||||||||||| || || |||||| |||||||
Sbjct: 35838604 ggttgcgaagacagccatatgcaaggacaagatgaccattgggacaaggtacatggagct 35838663

                                               
Query: 210      gttcccctcgactcccgaggaggcgagcagg 240
                |||||| || || || |||||||| ||||||
Sbjct: 35838664 gttcccatcaaccccagaggaggccagcagg 35838694
to top
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1282_E10
          Length = 107284

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                         
Query: 37    acatcatcaagttctttgtggagtacgagctgacggaggacaatgtgcacatcgcgtacc 96
             ||||||||||||||||||| ||||| ||| |||||||||| |||||||||| ||||||||
Sbjct: 29049 acatcatcaagttctttgtagagtatgagttgacggaggaaaatgtgcacaccgcgtacc 29108

              
Query: 97    g 97
             |
Sbjct: 29109 g 29109



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                         
Query: 150   ggttgcaaagactgccatgtgcaaggataagatgaccatcggtaccaggtacgtggagct 209
             |||||| ||||| ||||| |||||||| ||||||||||| || || |||||| |||||||
Sbjct: 29150 ggttgcgaagacagccatatgcaaggacaagatgaccattgggacaaggtacatggagct 29209

                                            
Query: 210   gttcccctcgactcccgaggaggcgagcagg 240
             |||||| || || || |||||||| ||||||
Sbjct: 29210 gttcccatcaaccccagaggaggccagcagg 29240
to top
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1149_C12
          Length = 120743

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                          
Query: 37     acatcatcaagttctttgtggagtacgagctgacggaggacaatgtgcacatcgcgtacc 96
              ||||||||||||||||||| ||||| ||| |||||||||| |||||||||| ||||||||
Sbjct: 109218 acatcatcaagttctttgtagagtatgagttgacggaggaaaatgtgcacaccgcgtacc 109277

               
Query: 97     g 97
              |
Sbjct: 109278 g 109278



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                          
Query: 150    ggttgcaaagactgccatgtgcaaggataagatgaccatcggtaccaggtacgtggagct 209
              |||||| ||||| ||||| |||||||| ||||||||||| || || |||||| |||||||
Sbjct: 109319 ggttgcgaagacagccatatgcaaggacaagatgaccattgggacaaggtacatggagct 109378

                                             
Query: 210    gttcccctcgactcccgaggaggcgagcagg 240
              |||||| || || || |||||||| ||||||
Sbjct: 109379 gttcccatcaaccccagaggaggccagcagg 109409
to top
>emb|AL137164.3|CNS01DWF Human chromosome 14 DNA sequence BAC R-893D14 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175368

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 156   aaagactgccatgtgcaaggataagat 182
             ||||||||||||||||||||| |||||
Sbjct: 89714 aaagactgccatgtgcaaggagaagat 89740
to top
>ref|NM_125998.3| Arabidopsis thaliana RNA binding / nucleic acid binding AT5G66010
           mRNA, complete cds
          Length = 1116

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 104 atgggaaggccactggcgaggcctttgtggagtt 137
           ||||||||||||| || ||||| |||||||||||
Sbjct: 710 atgggaaggccacgggagaggcatttgtggagtt 743
to top
>emb|BX833141.1|CNS09Z0Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL36ZA08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 832

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 104 atgggaaggccactggcgaggcctttgtggagtt 137
           ||||||||||||| || ||||| |||||||||||
Sbjct: 558 atgggaaggccacgggagaggcatttgtggagtt 591
to top
>gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, complete sequence
          Length = 220443

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 275    ccacaagatgctgaaccctggg 296
              ||||||||||||||||||||||
Sbjct: 175033 ccacaagatgctgaaccctggg 175012
to top
>dbj|AB011474.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2A18
          Length = 79899

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 104   atgggaaggccactggcgaggcctttgtggagtt 137
             ||||||||||||| || ||||| |||||||||||
Sbjct: 17073 atgggaaggccacgggagaggcatttgtggagtt 17106
to top
>emb|AL929119.19| Zebrafish DNA sequence from clone CH211-214G8 in linkage group 20,
             complete sequence
          Length = 136176

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 483   ttgaaaaaatgcacttgtacttcatg 508
             ||||||||||||| ||||||||||||
Sbjct: 24576 ttgaaaaaatgcatttgtacttcatg 24551
to top
>gb|AC138657.1| Homo sapiens BAC clone RP11-141I1 from 4, complete sequence
          Length = 119794

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 468   tgttaccatccttttttgaaa 488
             |||||||||||||||||||||
Sbjct: 67502 tgttaccatccttttttgaaa 67522
to top
>dbj|AP006393.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT03B16, TM0276,
             complete sequence
          Length = 91654

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 339   ctcatcatgcttaaaaattgt 359
             |||||||||||||||||||||
Sbjct: 57612 ctcatcatgcttaaaaattgt 57632
to top
>dbj|AP004474.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT13B22, TM0009,
             complete sequence
          Length = 77319

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 339   ctcatcatgcttaaaaattgt 359
             |||||||||||||||||||||
Sbjct: 21782 ctcatcatgcttaaaaattgt 21762
to top
>gb|AC024877.2| Caenorhabditis elegans cosmid Y95B8A, complete sequence
          Length = 104970

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 479   ttttttgaaaaaatgcactt 498
             ||||||||||||||||||||
Sbjct: 16702 ttttttgaaaaaatgcactt 16721
to top
>ref|XM_381865.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01689.1)
           partial mRNA
          Length = 393

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 116 ctggcgaggcctttgtggagttcc 139
           |||||||||||||||||| |||||
Sbjct: 132 ctggcgaggcctttgtggggttcc 109
to top
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0007P22, complete sequence
          Length = 148068

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 479    ttttttgaaaaaatgcactt 498
              ||||||||||||||||||||
Sbjct: 100495 ttttttgaaaaaatgcactt 100476
to top
>emb|AL390197.19| Human DNA sequence from clone RP11-190F19 on chromosome 10 Contains the
              gene for a novel protein similar to HGF activator (HGFAC)
              and the NRAP gene for nebulin-related anchoring protein,
              complete sequence
          Length = 188349

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 430    aaaaaactgtgtatgagata 449
              ||||||||||||||||||||
Sbjct: 175707 aaaaaactgtgtatgagata 175688
to top
>gb|AF530057.1| Turnip mosaic virus strain L polyprotein precursor, gene, partial
           cds
          Length = 1317

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  tacgagctgacggaggacaa 79
           ||||||||||||||||||||
Sbjct: 604 tacgagctgacggaggacaa 623
to top
>emb|AL162753.2|NMA2Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment
              2/7
          Length = 349061

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    tgcaaagactgccatgtgca 172
              ||||||||||||||||||||
Sbjct: 138216 tgcaaagactgccatgtgca 138235
to top
>emb|BX538138.1|HSM806339 Homo sapiens genomic DNA; cDNA DKFZp686G10117 (from clone
           DKFZp686G10117)
          Length = 3766

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 385 cgctcctgtttctgatgaga 404
           ||||||||||||||||||||
Sbjct: 883 cgctcctgtttctgatgaga 864
to top
>gb|AC025069.9| Homo sapiens chromosome 11, clone RP11-132I17, complete sequence
          Length = 159986

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   agaagggcataatcttgttc 320
             ||||||||||||||||||||
Sbjct: 81668 agaagggcataatcttgttc 81687
to top
>gb|AC021824.7| Homo sapiens chromosome 11, clone RP11-220C23, complete sequence
          Length = 160869

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   agaagggcataatcttgttc 320
             ||||||||||||||||||||
Sbjct: 32441 agaagggcataatcttgttc 32460
to top
>gb|AC099785.2| Homo sapiens chromosome 1 clone RP11-435I3, complete sequence
          Length = 186160

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     atcatcaagttctttgtgga 58
              ||||||||||||||||||||
Sbjct: 183727 atcatcaagttctttgtgga 183708
to top
>gb|AC118471.2| Homo sapiens chromosome 1 clone RP11-377O11, complete sequence
          Length = 59063

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    atcatcaagttctttgtgga 58
             ||||||||||||||||||||
Sbjct: 58503 atcatcaagttctttgtgga 58522
to top
>gb|AC105750.2| Homo sapiens chromosome 3 clone RP11-776K4, complete sequence
          Length = 166478

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   gctcctgtttctgatgagac 405
             ||||||||||||||||||||
Sbjct: 90672 gctcctgtttctgatgagac 90691
to top
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 153     tgcaaagactgccatgtgca 172
               ||||||||||||||||||||
Sbjct: 2050319 tgcaaagactgccatgtgca 2050300
to top
>gb|AC020591.7| Homo sapiens BAC clone RP11-150O15 from 2, complete sequence
          Length = 59623

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 445   agatactttgctgagattgtaact 468
             |||||||||||||||||| |||||
Sbjct: 45315 agatactttgctgagattataact 45338
to top
>gb|AF539411.1| Turnip mosaic virus TuMV-SD5 coat protein (CP) mRNA, partial cds
          Length = 867

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  tacgagctgacggaggacaa 79
           ||||||||||||||||||||
Sbjct: 364 tacgagctgacggaggacaa 383
to top
>gb|AC156630.6| Mus musculus BAC clone RP24-556B7 from chromosome 7, complete sequence
          Length = 205753

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 488    aaaatgcacttgtacttcat 507
              ||||||||||||||||||||
Sbjct: 165328 aaaatgcacttgtacttcat 165347
to top
>dbj|AB180023.1| Turnip mosaic virus gene for polyprotein, partial cds
          Length = 1076

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  tacgagctgacggaggacaa 79
           ||||||||||||||||||||
Sbjct: 364 tacgagctgacggaggacaa 383
to top
>dbj|AB180021.1| Turnip mosaic virus gene for polyprotein, partial cds
          Length = 1076

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  tacgagctgacggaggacaa 79
           ||||||||||||||||||||
Sbjct: 364 tacgagctgacggaggacaa 383
to top
>dbj|AB180016.1| Turnip mosaic virus gene for polyprotein, partial cds
          Length = 1076

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  tacgagctgacggaggacaa 79
           ||||||||||||||||||||
Sbjct: 364 tacgagctgacggaggacaa 383
to top
>emb|AJ297629.2|TMO297629 Turnip mosaic virus genomic RNA for partial NIb replicase and coat
            protein, isolate Wenzhou
          Length = 1709

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   tacgagctgacggaggacaa 79
            ||||||||||||||||||||
Sbjct: 997  tacgagctgacggaggacaa 1016
to top
>dbj|AP001892.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-49M9, complete
              sequences
          Length = 144308

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 385    cgctcctgtttctgatgaga 404
              ||||||||||||||||||||
Sbjct: 118794 cgctcctgtttctgatgaga 118775
to top
>emb|CT010575.15| Mouse DNA sequence from clone RP23-217J21 on chromosome 13, complete
             sequence
          Length = 201791

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   cgctcctgtttctgatgaga 404
             ||||||||||||||||||||
Sbjct: 95008 cgctcctgtttctgatgaga 95027
to top
>gb|AC015720.20| Homo sapiens chromosome 15, clone RP11-151H2, complete sequence
          Length = 174559

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 431    aaaaactgtgtatgagatactttg 454
              |||||||||||||||||| |||||
Sbjct: 133018 aaaaactgtgtatgagattctttg 132995
to top
>dbj|AB076553.1| Turnip mosaic virus CP gene for polyprotein, partial cds,
           isolate:HJ1S
          Length = 864

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  tacgagctgacggaggacaa 79
           ||||||||||||||||||||
Sbjct: 364 tacgagctgacggaggacaa 383


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,107,199
Number of Sequences: 3902068
Number of extensions: 4107199
Number of successful extensions: 76526
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76281
Number of HSP's gapped (non-prelim): 235
length of query: 518
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 495
effective length of database: 17,143,297,704
effective search space: 8485932363480
effective search space used: 8485932363480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top