ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd17p05 |
|---|---|
| Clone Library Name | barley_pub |
>RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 61.2 bits (147), Expect = 2e-09 Identities = 26/61 (42%), Positives = 41/61 (67%) Frame = +2 Query: 38 IIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPS 217 +I FF + ++ ED+++IAY +GKATGE FVEF K A+C+ K +G R++++ P Sbjct: 446 VIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 505 Query: 218 T 220 T Sbjct: 506 T 506 Score = 30.4 bits (67), Expect = 3.0 Identities = 16/55 (29%), Positives = 29/55 (52%) Frame = +2 Query: 65 LTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEE 229 L D VH+ G+ G V+F + + A+ +++M + RYVE+ P+T + Sbjct: 327 LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQ 381
>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 61.2 bits (147), Expect = 2e-09 Identities = 26/61 (42%), Positives = 41/61 (67%) Frame = +2 Query: 38 IIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPS 217 +I FF + ++ ED+++IAY +GKATGE FVEF K A+C+ K +G R++++ P Sbjct: 446 VIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 505 Query: 218 T 220 T Sbjct: 506 T 506 Score = 30.4 bits (67), Expect = 3.0 Identities = 16/55 (29%), Positives = 29/55 (52%) Frame = +2 Query: 65 LTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEE 229 L D VH+ G+ G V+F + + A+ +++M + RYVE+ P+T + Sbjct: 327 LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQ 381
>RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 1002 Score = 60.8 bits (146), Expect = 2e-09 Identities = 26/61 (42%), Positives = 41/61 (67%) Frame = +2 Query: 38 IIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPS 217 +I FF + ++ ED+++IAY +GKATGE FVEF K A+C+ K +G R++++ P Sbjct: 446 VIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPI 505 Query: 218 T 220 T Sbjct: 506 T 506 Score = 30.4 bits (67), Expect = 3.0 Identities = 16/55 (29%), Positives = 29/55 (52%) Frame = +2 Query: 65 LTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEE 229 L D VH+ G+ G V+F + + A+ +++M + RYVE+ P+T + Sbjct: 327 LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQ 381
>HNRPF_MACFA (Q60HC3) Heterogeneous nuclear ribonucleoprotein F (hnRNP F)| Length = 414 Score = 57.0 bits (136), Expect = 3e-08 Identities = 27/64 (42%), Positives = 42/64 (65%) Frame = +2 Query: 38 IIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPS 217 I++FF E+ + + + +GK TGEAFV+F + E+A+ A+ K K IG RY+E+F S Sbjct: 126 IVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 185 Query: 218 TPEE 229 + EE Sbjct: 186 SQEE 189 Score = 48.5 bits (114), Expect = 1e-05 Identities = 26/52 (50%), Positives = 32/52 (61%) Frame = +2 Query: 80 VHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEAS 235 VHI DG+ TGEA VEF T E A AM KD+ + RY+ELF ++ AS Sbjct: 316 VHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGAS 367 Score = 45.8 bits (107), Expect = 7e-05 Identities = 20/46 (43%), Positives = 31/46 (67%) Frame = +2 Query: 80 VHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPS 217 VH Y +G+ +GEAFVE + + K A+ KD+ ++G RY+E+F S Sbjct: 42 VHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKS 87
>HNRPF_HUMAN (P52597) Heterogeneous nuclear ribonucleoprotein F (hnRNP F)| (Nucleolin-like protein mcs94-1) Length = 414 Score = 57.0 bits (136), Expect = 3e-08 Identities = 27/64 (42%), Positives = 42/64 (65%) Frame = +2 Query: 38 IIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPS 217 I++FF E+ + + + +GK TGEAFV+F + E+A+ A+ K K IG RY+E+F S Sbjct: 126 IVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 185 Query: 218 TPEE 229 + EE Sbjct: 186 SQEE 189 Score = 48.5 bits (114), Expect = 1e-05 Identities = 26/52 (50%), Positives = 32/52 (61%) Frame = +2 Query: 80 VHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEAS 235 VHI DG+ TGEA VEF T E A AM KD+ + RY+ELF ++ AS Sbjct: 316 VHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGAS 367 Score = 45.8 bits (107), Expect = 7e-05 Identities = 20/46 (43%), Positives = 31/46 (67%) Frame = +2 Query: 80 VHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPS 217 VH Y +G+ +GEAFVE + + K A+ KD+ ++G RY+E+F S Sbjct: 42 VHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKS 87
>HNRH3_HUMAN (P31942) Heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3)| (hnRNP 2H9) Length = 346 Score = 54.7 bits (130), Expect = 1e-07 Identities = 25/64 (39%), Positives = 41/64 (64%) Frame = +2 Query: 38 IIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPS 217 I++FF E+ + + + G++TGEAFV+F + E+A+ A+ K K IG RY+E+F S Sbjct: 32 IVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRS 91 Query: 218 TPEE 229 + E Sbjct: 92 SRSE 95 Score = 50.1 bits (118), Expect = 4e-06 Identities = 29/49 (59%), Positives = 33/49 (67%), Gaps = 1/49 (2%) Frame = +2 Query: 80 VHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELF-PSTP 223 VHI +DG+ATGEA VEF T E A AM KDK + RY+ELF STP Sbjct: 223 VHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTP 271
>HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)| Length = 448 Score = 53.9 bits (128), Expect = 3e-07 Identities = 25/64 (39%), Positives = 41/64 (64%) Frame = +2 Query: 38 IIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPS 217 I++FF E+ + + + G++TGEAFV+F + E+A+ A+ K K IG RY+E+F S Sbjct: 126 IVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 185 Query: 218 TPEE 229 + E Sbjct: 186 SRAE 189 Score = 49.7 bits (117), Expect = 5e-06 Identities = 28/52 (53%), Positives = 32/52 (61%) Frame = +2 Query: 80 VHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEAS 235 VHI DG+ TGEA VEF T E A AM KDK + RYVELF ++ AS Sbjct: 316 VHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGAS 367 Score = 45.8 bits (107), Expect = 7e-05 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%) Frame = +2 Query: 44 KFFVEYELTE--DNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPS 217 +FF + ++ + Y +G+ +GEAFVE + + K A+ KD+ T+G RYVE+F S Sbjct: 28 RFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKS 87 Query: 218 TPEE 229 E Sbjct: 88 NNVE 91
>HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)| Length = 448 Score = 53.9 bits (128), Expect = 3e-07 Identities = 25/64 (39%), Positives = 41/64 (64%) Frame = +2 Query: 38 IIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPS 217 I++FF E+ + + + G++TGEAFV+F + E+A+ A+ K K IG RY+E+F S Sbjct: 126 IVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 185 Query: 218 TPEE 229 + E Sbjct: 186 SRAE 189 Score = 49.7 bits (117), Expect = 5e-06 Identities = 28/52 (53%), Positives = 32/52 (61%) Frame = +2 Query: 80 VHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEAS 235 VHI DG+ TGEA VEF T E A AM KDK + RYVELF ++ AS Sbjct: 316 VHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGAS 367 Score = 45.8 bits (107), Expect = 7e-05 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%) Frame = +2 Query: 44 KFFVEYELTE--DNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPS 217 +FF + ++ + Y +G+ +GEAFVE + + K A+ KD+ T+G RYVE+F S Sbjct: 28 RFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKS 87 Query: 218 TPEE 229 E Sbjct: 88 NNVE 91
>HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')| Length = 449 Score = 53.1 bits (126), Expect = 4e-07 Identities = 25/64 (39%), Positives = 41/64 (64%) Frame = +2 Query: 38 IIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPS 217 I++FF E+ + + + G++TGEAFV+F + E+A+ A+ K K IG RY+E+F S Sbjct: 127 IVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186 Query: 218 TPEE 229 + E Sbjct: 187 SRAE 190 Score = 48.9 bits (115), Expect = 8e-06 Identities = 26/44 (59%), Positives = 28/44 (63%) Frame = +2 Query: 80 VHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELF 211 VHI DG+ TGEA VEF T E A AM KDK + RYVELF Sbjct: 317 VHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 2/66 (3%) Frame = +2 Query: 38 IIKFFVEYELTE--DNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELF 211 +++FF + ++ V Y +G+ +GEAFVE + + K A+ KD+ T+G RYVE+F Sbjct: 27 VMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVF 86 Query: 212 PSTPEE 229 S E Sbjct: 87 KSNSVE 92
>HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')| (FTP-3) Length = 449 Score = 53.1 bits (126), Expect = 4e-07 Identities = 25/64 (39%), Positives = 41/64 (64%) Frame = +2 Query: 38 IIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPS 217 I++FF E+ + + + G++TGEAFV+F + E+A+ A+ K K IG RY+E+F S Sbjct: 127 IVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186 Query: 218 TPEE 229 + E Sbjct: 187 SRAE 190 Score = 48.9 bits (115), Expect = 8e-06 Identities = 26/44 (59%), Positives = 28/44 (63%) Frame = +2 Query: 80 VHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELF 211 VHI DG+ TGEA VEF T E A AM KDK + RYVELF Sbjct: 317 VHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 360 Score = 48.9 bits (115), Expect = 8e-06 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 2/66 (3%) Frame = +2 Query: 38 IIKFFVEYELTE--DNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELF 211 +++FF + ++ + Y +G+ +GEAFVE + E K A+ KD+ T+G RYVE+F Sbjct: 27 VMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVF 86 Query: 212 PSTPEE 229 S E Sbjct: 87 KSNSVE 92
>GRSF1_HUMAN (Q12849) G-rich sequence factor 1 (GRSF-1)| Length = 447 Score = 47.8 bits (112), Expect = 2e-05 Identities = 25/64 (39%), Positives = 36/64 (56%) Frame = +2 Query: 38 IIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPS 217 I+ FF + + + YR K TGEA+V+F E+A A+ K + IG RY+E+FPS Sbjct: 233 IVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPS 291 Query: 218 TPEE 229 E Sbjct: 292 RRNE 295 Score = 47.4 bits (111), Expect = 2e-05 Identities = 28/58 (48%), Positives = 33/58 (56%) Frame = +2 Query: 38 IIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELF 211 II FF L + + Y S GKATGEA V F T E A AM KD+ + RY+ELF Sbjct: 384 IINFFAP--LKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 439 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Frame = +2 Query: 38 IIKFFVEYELT--EDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELF 211 ++ FF + + E+ +H DGK G+A +E + + + A+ K +M +G RYVE++ Sbjct: 133 VLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 192 Query: 212 PSTPEE 229 E+ Sbjct: 193 EINNED 198
>GRSF1_MOUSE (Q8C5Q4) G-rich sequence factor 1 (GRSF-1)| Length = 479 Score = 47.8 bits (112), Expect = 2e-05 Identities = 25/64 (39%), Positives = 36/64 (56%) Frame = +2 Query: 38 IIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPS 217 I+ FF + + + YR K TGEA+V+F E+A A+ K + IG RY+E+FPS Sbjct: 265 IVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPS 323 Query: 218 TPEE 229 E Sbjct: 324 RRNE 327 Score = 47.4 bits (111), Expect = 2e-05 Identities = 28/58 (48%), Positives = 33/58 (56%) Frame = +2 Query: 38 IIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELF 211 II FF L + + Y S GKATGEA V F T E A AM KD+ + RY+ELF Sbjct: 416 IINFFAP--LKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELF 471 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Frame = +2 Query: 38 IIKFFVEYEL--TEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELF 211 ++ FF + + +E+ +H DGK G+A +E + + + A+ K +M +G RYVE++ Sbjct: 165 VLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 224 Query: 212 PSTPEE 229 E+ Sbjct: 225 EINNED 230
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 33.5 bits (75), Expect = 0.35 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = +2 Query: 80 VHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASRAKPR 250 + I + G TG FV+F E K A+ ++ +G RY+E+F ++ P+ Sbjct: 322 IRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPK 378
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 33.5 bits (75), Expect = 0.35 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = +2 Query: 80 VHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASRAKPR 250 + I + G TG FV+ + E K A+ ++ +G RY+E+F +R P+ Sbjct: 321 IRIVRNAHGNKTGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREKQAPTARGPPK 377
>EST_ACILW (P18773) Esterase (EC 3.1.1.-)| Length = 303 Score = 33.5 bits (75), Expect = 0.35 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Frame = -3 Query: 256 PAPRLRPARLLGSRGEQLHVPGTDGHLIL-AHGSLCNLGRRELHKGLASGLPIRAVRDV 83 P ++RP RL G RGE++ + LI HG LG H+ L + L R V Sbjct: 48 PTVQIRPIRLAGVRGEEIKAQASATQLIFHIHGGAFFLGSLNTHRALMTDLASRTQMQV 106
>SUUR_DROER (P59597) Protein suppressor of underreplication| Length = 962 Score = 32.3 bits (72), Expect = 0.79 Identities = 19/55 (34%), Positives = 24/55 (43%) Frame = -1 Query: 459 ISAKYLIHSFLP*RRSTRPSHQKQERELTQSNRDTIFKHDESTKAKPEQDYALLT 295 I++KYL H L + P K E T I K + KAKPEQ + T Sbjct: 488 INSKYLKHHVLDDAKRNFPRRIKAEGNQTPKTSKRIVKQESKAKAKPEQKKKIKT 542
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 31.6 bits (70), Expect = 1.3 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = +2 Query: 77 NVHIAYRSDGKATGEAFVEFPTAEVAKTAM 166 ++ + + G+ G AFVEFPTAE AK A+ Sbjct: 486 SIKMPQNNQGRPKGYAFVEFPTAEDAKEAL 515
>RIPK5_FUGRU (Q4VSN2) Receptor-interacting serine/threonine-protein kinase 5 (EC| 2.7.11.1) (Dusty protein kinase) (Dusty PK) Length = 921 Score = 31.6 bits (70), Expect = 1.3 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -3 Query: 319 GTRLCPSDTQGSASCGKLRSVPAPRLRPARLLGSRGEQLH 200 G CP G+ SCG +P P +P +LG E+LH Sbjct: 295 GLLTCP---MGNCSCGAPTQMPTPGAKPQSVLGENFERLH 331
>TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47| Length = 641 Score = 31.2 bits (69), Expect = 1.8 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = -2 Query: 149 PRPSGTPQRPRQWPSHPSGTRCAHCPPSARTP 54 P PS P P QWP+ RC CP A P Sbjct: 113 PEPSA-PCAPEQWPAGEEPVRCDACPEGAALP 143
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 30.8 bits (68), Expect = 2.3 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 9/47 (19%) Frame = +2 Query: 53 VEYELTEDNVHIAY---------RSDGKATGEAFVEFPTAEVAKTAM 166 + Y TED++ + ++ G+A G AF+EF +AE AK AM Sbjct: 421 LSYSATEDSLREVFEKATSIRIPQNQGRAKGFAFIEFSSAEDAKDAM 467
>GCH2_PSESM (Q889Q3) GTP cyclohydrolase-2 (EC 3.5.4.25) (GTP cyclohydrolase II)| Length = 205 Score = 30.4 bits (67), Expect = 3.0 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Frame = -1 Query: 381 ELTQSNRDTIFKHDESTKAKPEQDYALLTPRVQHLVVSCVQCL---PRGFALLASSGV 217 EL DT+ ++ A ++DYA+ P +QHL V ++ + PR L G+ Sbjct: 106 ELQDGGADTVEANERLGFAADQRDYAICLPMLQHLGVQSLRLMTNNPRKVKALTDMGI 163
>RL4_CAEEL (O02056) 60S ribosomal protein L4| Length = 344 Score = 29.6 bits (65), Expect = 5.1 Identities = 20/63 (31%), Positives = 28/63 (44%) Frame = -2 Query: 461 QSQQSISYTVFYPEDAVRDRLIRNRSAN*HNPTEIQFLSMMRAQRLNRNKIMPF*HPGFS 282 Q +Q + V Y +DA R RN I + +M +RLN K+ P H G Sbjct: 198 QHKQKLGPVVIYGQDAECARAFRN----------IPGVDVMNVERLNLLKLAPGGHLGRL 247 Query: 281 ILW 273 I+W Sbjct: 248 IIW 250
>YI31_AGRT7 (P05680) Insertion element IS136 hypothetical 16.9 kDa protein| Length = 159 Score = 29.6 bits (65), Expect = 5.1 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%) Frame = -2 Query: 185 WSSYPCTWQSLQPRPSGTPQRPRQWPSHP--SGTRCAHCPPS 66 W + PC W+S QP R W P +G R A P+ Sbjct: 81 WVTTPCYWRSTQPFARAASTMARSWSCAPTCAGARTAWSSPA 122
>NANK_YERPS (Q668J9) Putative N-acetylmannosamine kinase (EC 2.7.1.60) (ManNAc| kinase) Length = 290 Score = 29.3 bits (64), Expect = 6.7 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -3 Query: 229 LLGSRGEQLHVPGTDGHLIL-AHGSLCNLGRRELHKGLASGLPIRA 95 L+G RG H+ GH + HG LC GRR + +ASG I A Sbjct: 144 LVGQRGLAGHI----GHTLSDPHGVLCGCGRRGCVESVASGTAIGA 185
>NANK_YERPE (Q8ZCG9) Putative N-acetylmannosamine kinase (EC 2.7.1.60) (ManNAc| kinase) Length = 290 Score = 29.3 bits (64), Expect = 6.7 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -3 Query: 229 LLGSRGEQLHVPGTDGHLIL-AHGSLCNLGRRELHKGLASGLPIRA 95 L+G RG H+ GH + HG LC GRR + +ASG I A Sbjct: 144 LVGQRGLAGHI----GHTLSDPHGVLCGCGRRGCVESVASGTAIGA 185
>NANK_HAEIN (P44541) Putative N-acetylmannosamine kinase (EC 2.7.1.60) (ManNAc| kinase) Length = 300 Score = 29.3 bits (64), Expect = 6.7 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -3 Query: 223 GSRGEQLHVPGTDGHLIL-AHGSLCNLGRRELHKGLASGLPIRAV 92 GSRG H+ GH + +G++C GRR + +ASG I AV Sbjct: 146 GSRGIAGHI----GHTLADPNGAICGCGRRGCVEAIASGRAIEAV 186
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 29.3 bits (64), Expect = 6.7 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +2 Query: 80 VHIAYRSDGKATGEAFVEFPTAEVAKTAMCK-DKMTIGTRYVELFPSTPEEASRAK 244 + + GK+ G AF+EF + E AK A+ +KM I R + L P + A+ Sbjct: 511 IKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNAR 566
>KAPR_USTMA (P49605) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 522 Score = 29.3 bits (64), Expect = 6.7 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -1 Query: 420 RRSTRPSHQKQERELTQSNRDTIFKHDESTKAKP 319 R R ++Q+R L +S DT F H + AKP Sbjct: 477 RMRMRTQRRRQQRALARSGADTSFPHPMDSSAKP 510
>CP52A_CANTR (P10615) Cytochrome P450 52A1 (EC 1.14.14.-) (CYPLIIA1)| (Alkane-inducible P450-ALK1) Length = 543 Score = 29.3 bits (64), Expect = 6.7 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Frame = -1 Query: 198 YLVPMVILSLHM-AVFATSAVGNSTKASPVAFPSERYAMCTLSS--VSSYSTKNLMM 37 Y +P+VILSL++ ++ T + KA P+A + Y C ++ + Y +K +M Sbjct: 31 YFIPLVILSLNLISMLHTKYLERKFKAKPLAVYVQDYTFCLITPLVLIYYKSKGTVM 87
>ELA1_HUMAN (Q9UNI1) Elastase-1 precursor (EC 3.4.21.36)| Length = 258 Score = 28.9 bits (63), Expect = 8.7 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -1 Query: 105 PSERYAMCTLSSVSSYSTKNLMMXXYGGGVREPTQ 1 PS YA+C+ SS + KN M+ G GVR Q Sbjct: 169 PSVDYAICSSSSYWGSTVKNTMVCAGGDGVRSGCQ 203
>TRI47_HUMAN (Q96LD4) Tripartite motif protein 47 (Gene overexpressed in| astrocytoma protein) (RING finger protein 100) Length = 638 Score = 28.9 bits (63), Expect = 8.7 Identities = 13/32 (40%), Positives = 14/32 (43%) Frame = -2 Query: 149 PRPSGTPQRPRQWPSHPSGTRCAHCPPSARTP 54 P PS P P WP+ RC CP A P Sbjct: 109 PEPSA-PCAPEPWPAGEEPVRCDACPEGAALP 139
>YCF2_CUSRE (P32033) Protein ycf2| Length = 740 Score = 28.9 bits (63), Expect = 8.7 Identities = 23/100 (23%), Positives = 36/100 (36%) Frame = -1 Query: 318 EQDYALLTPRVQHLVVSCVQCLPRGFALLASSGVEGNSSTYLVPMVILSLHMAVFATSAV 139 E +Y L V HL C +C P ++AS+ + + A+ A + Sbjct: 206 ESNYLSLGLLVNHLSRDCERCSPINILVIASTHIP------------QKVDPALIAPKKL 253 Query: 138 GNSTKASPVAFPSERYAMCTLSSVSSYSTKNLMMXXYGGG 19 K + P +R TLS + +N M G G Sbjct: 254 NTCIKLRRLLIPQQRKYFFTLSYTRGFHLENKMFHTNGFG 293 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,841,521 Number of Sequences: 219361 Number of extensions: 1558323 Number of successful extensions: 5694 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 5364 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5685 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
