Clone Information

BLAST Search Result

Clone Name	basd18e06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CHLP_SYNY3 (Q55087) Geranylgeranyl hydrogenase	229	8e-60
2	BCHP_RHOCA (P26172) Geranylgeranyl hydrogenase	99	9e-21
3	Y1602_METBF (P96800) Hypothetical protein Mbar_A1602 (ORF3)	43	0.001
4	Y1520_METJA (Q58915) Hypothetical protein MJ1520	39	0.011
5	ETFD_ACIAD (P94132) Probable electron transfer flavoprotein-ubiq...	39	0.011
6	FIXC_RHIME (P09820) Protein fixC	36	0.093
7	YDIS_ECOLI (P77337) Probable electron transfer flavoprotein-quin...	36	0.093
8	COQ6_DROME (Q9VMQ5) Putative ubiquinone biosynthesis monooxgenas...	35	0.16
9	Y532_METJA (Q57952) Hypothetical protein MJ0532 precursor	35	0.16
10	PHLPP_HUMAN (O60346) PH domain leucine-rich repeat-containing pr...	34	0.46
11	ETFD_SCHPO (P87111) Probable electron transfer flavoprotein-ubiq...	34	0.46
12	FIXC_AZOCA (P26484) Protein fixC	33	0.60
13	FIXC_SALTY (Q8ZRW9) Protein fixC	33	0.60
14	FIXC_SALTI (Q8Z9K9) Protein fixC	33	0.60
15	ETFD_YEAST (Q08822) Probable electron transfer flavoprotein-ubiq...	33	1.0
16	CO4A2_MOUSE (P08122) Collagen alpha-2(IV) chain precursor	33	1.0
17	CH10_PARDE (Q9Z463) 10 kDa chaperonin (Protein Cpn10) (groES pro...	33	1.0
18	FIXC_BRAJA (P10331) Protein fixC	32	1.3
19	FIXC_SHIFL (Q83SQ7) Protein fixC	32	1.3
20	FIXC_ECOLI (P68644) Protein fixC	32	1.3
21	FIXC_ECOL6 (P68645) Protein fixC	32	1.3
22	FIXC_ECO57 (Q7AHT0) Protein fixC	32	1.3
23	VP2_BRD (P35934) Structural core protein VP2	32	1.8
24	XRN2_MOUSE (Q9DBR1) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (Prote...	32	1.8
25	HIS5_NEIG1 (Q5FA21) Imidazole glycerol phosphate synthase subuni...	32	1.8
26	ETFD_PSEAE (Q9HZP5) Electron transfer flavoprotein-ubiquinone ox...	32	1.8
27	COQ6_HUMAN (Q9Y2Z9) Ubiquinone biosynthesis monooxgenase COQ6 (E...	32	2.3
28	UL61_HCMVA (P16818) Hypothetical protein UL61	31	3.0
29	IF2_MYCTU (P65131) Translation initiation factor IF-2	31	3.0
30	IF2_MYCBO (P65132) Translation initiation factor IF-2	31	3.0
31	FIXC_RHISN (Q53208) Protein fixC	31	3.0
32	HIS5_NEIMA (Q9JVH3) Imidazole glycerol phosphate synthase subuni...	31	3.0
33	LEU2_STAS1 (Q49Z14) 3-isopropylmalate dehydratase large subunit ...	31	3.9
34	PRPC_HUMAN (P02810) Salivary acidic proline-rich phosphoprotein ...	31	3.9
35	H2B2_STRPU (P16887) Histone H2B.2, sperm	31	3.9
36	H2B3_PARAN (P02292) Histone H2B.3, sperm	31	3.9
37	LEU2_VIBPA (Q87SS9) 3-isopropylmalate dehydratase large subunit ...	31	3.9
38	PAR3L_HUMAN (Q8TEW8) Amyotrophic lateral sclerosis 2 chromosome ...	31	3.9
39	IF2_THEFY (Q47RV1) Translation initiation factor IF-2	30	5.1
40	PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)	30	5.1
41	FABZ_PARUW (Q6ME73) (3R)-hydroxymyristoyl-[acyl carrier protein]...	30	5.1
42	EVX2_HUMAN (Q03828) Homeobox even-skipped homolog protein 2 (EVX-2)	30	6.7
43	PHLPP_RAT (Q9WTR8) PH domain leucine-rich repeat protein phospha...	30	6.7
44	HIS5_NEIMB (Q9K0H2) Imidazole glycerol phosphate synthase subuni...	30	6.7
45	PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing pr...	30	6.7
46	ETFD_CAEEL (Q11190) Probable electron transfer flavoprotein-ubiq...	30	8.7
47	CHSS3_HUMAN (Q70JA7) Chondroitin sulfate synthase 3 (EC 2.4.1.17...	30	8.7
48	Y34F_DROME (Q9W5D0) Hypothetical protein CG12467 in chromosome 1	30	8.7
49	LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain...	30	8.7
50	VIOC_CHRVO (Q9S3U9) Probable monooxygenase vioC (EC 1.-.-.-)	30	8.7
51	Y1300_SYNY3 (P72835) Hypothetical protein slr1300	30	8.7

>CHLP_SYNY3 (Q55087) Geranylgeranyl hydrogenase|
          Length = 407

 Score =  229 bits (583), Expect = 8e-60
 Identities = 113/168 (67%), Positives = 135/168 (80%)
 Frame = +3

Query: 21  QAATRLRAKDKIEGGKIIRVEAHPIPEHPRPKRVSGRVTLVGDAAGYVTKCSGEGIYFAA 200
           QA  R RA  K+EGG+II+VEAHPIPEHPRP+RV GRV LVGDAAG VTK SGEGIYFAA
Sbjct: 238 QAGIRTRAAKKLEGGEIIKVEAHPIPEHPRPRRVVGRVALVGDAAGTVTKSSGEGIYFAA 297

Query: 201 KSGRMCAEAIVAGSANGTRLVDESDLRKYLAEFDRLYWPTYKVLDILQKVFYRSNAAREA 380
           KS RMCAE IVA S NG R+  E+DL++Y+ ++D+ Y  TY VLDILQ+VFYR++A REA
Sbjct: 298 KSARMCAETIVATSNNGQRVPTEADLKQYIKQWDKRYGATYLVLDILQRVFYRTDATREA 357

Query: 381 FVEMCADDYVQRMTFDSYLYKRVVPGNPIEDIKLAVNTIGSLVRATAL 524
           FVEMC+D  VQ++TFDSYLYK VVP NP+  +K+   TIGSL+R  AL
Sbjct: 358 FVEMCSDIDVQKLTFDSYLYKTVVPANPLVQMKITAKTIGSLLRGNAL 405

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>BCHP_RHOCA (P26172) Geranylgeranyl hydrogenase|
          Length = 391

 Score = 99.4 bits (246), Expect = 9e-21
 Identities = 61/160 (38%), Positives = 89/160 (55%), Gaps = 1/160 (0%)
 Frame = +3

Query: 30  TRLRAKDKIEGGKIIRVEAHPIPEHPRPKRVSGR-VTLVGDAAGYVTKCSGEGIYFAAKS 206
           T LR    ++  + IR E  PIP  P     +G+ V L GDAAG V   SGEGIY+A   
Sbjct: 227 TLLRQMSGLDKEETIRKEGAPIPLQPLDVWDNGKDVVLSGDAAGVVAPSSGEGIYYAHAG 286

Query: 207 GRMCAEAIVAGSANGTRLVDESDLRKYLAEFDRLYWPTYKVLDILQKVFYRSNAAREAFV 386
           GR  AEA +A   +G      +DL+   A F + +   +KVL ++Q  +Y S+  RE FV
Sbjct: 287 GRYAAEAAMAFLKSGK----PADLKLARAGFMKEHGTVFKVLRMMQDKYYHSDDRRERFV 342

Query: 387 EMCADDYVQRMTFDSYLYKRVVPGNPIEDIKLAVNTIGSL 506
            +C D  VQRMTF+SY+ K++    P++++K+    +  L
Sbjct: 343 SLCHDVDVQRMTFESYMNKKMTKFQPLKNLKIGFKNLAHL 382

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>Y1602_METBF (P96800) Hypothetical protein Mbar_A1602 (ORF3)|
          Length = 387

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
 Frame = +3

Query: 75  RVEAHPIPEHP-RPKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANG 251
           +++ H IP +    K+      LVGDAAG+    +GEGIY+A KSG + AE I +   +G
Sbjct: 241 KLKGHIIPYYGINYKQPDFPCVLVGDAAGFGEYWTGEGIYYAVKSGTIAAEVISSSIKSG 300

Query: 252 TRLVDESDL-RKYLAEFDR 305
             + D   L R+Y  E  R
Sbjct: 301 --IFDRQALQRRYQREIIR 317

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>Y1520_METJA (Q58915) Hypothetical protein MJ1520|
          Length = 387

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = +3

Query: 42  AKDKIEGGKIIRVEAHPIPEHPRPKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCA 221
           AK+ ++   I       +P     K     V LVGDAA +V   SG G+YF A  G++  
Sbjct: 232 AKEILKNATITEFSTGSLPIGYLDKTFKDNVLLVGDAACHVKPLSGGGLYFGAMGGKIAG 291

Query: 222 EAI 230
           E I
Sbjct: 292 EVI 294

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>ETFD_ACIAD (P94132) Probable electron transfer flavoprotein-ubiquinone|
           oxidoreductase (EC 1.5.5.1) (ETF-QO) (ETF-ubiquinone
           oxidoreductase) (ETF dehydrogenase)
           (Electron-transferring-flavoprotein dehydrogenase)
          Length = 570

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 17/104 (16%)
 Frame = +3

Query: 45  KDKIEGGKIIRVEAHPIPE---HPRPKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRM 215
           K  +EGGK I   A  + +   +  PK       L+GD AG++     +G + A KSG +
Sbjct: 294 KQYLEGGKRISYGARAVVKGGLNSLPKLTFPGGCLIGDDAGFLNFAKIKGSHTAMKSGML 353

Query: 216 CAEAIVAGSANG---------TRLVD-----ESDLRKYLAEFDR 305
           C EA+    A G          R+V+     + +L  Y  +FD+
Sbjct: 354 CGEAVFEAIARGVDKGGDLAIARVVEGEDLFDKELTTYTQKFDK 397

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>FIXC_RHIME (P09820) Protein fixC|
          Length = 435

 Score = 36.2 bits (82), Expect = 0.093
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +3

Query: 54  IEGGKIIRVEAHPIPE---HPRPKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAE 224
           I G ++    AH IPE   +  P+       +VGDAA        EG   A  SGRM  E
Sbjct: 271 IAGSEVKEYAAHLIPEGGFNAIPRLCGNGWVVVGDAAQLNNAVHREGSNLAMASGRMAGE 330

Query: 225 AIVAGSANGTRLVDESDLRKYLAEFDRLY 311
           AI    + G  ++D++ L  Y    D+ +
Sbjct: 331 AISIIKSRG-GVMDKASLSLYKTMLDKSF 358

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>YDIS_ECOLI (P77337) Probable electron transfer flavoprotein-quinone|
           oxidoreductase ydiS (EC 1.5.5.-)
          Length = 429

 Score = 36.2 bits (82), Expect = 0.093
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
 Frame = +3

Query: 54  IEGGKIIRVEAHPIPEHPR---PKRVSGRVTLVGDAAGYVTKC--SGEGIYFAAKSGRMC 218
           I GGK++   AH +PE      P+ V+  V +VGDAAG+      +  G+  A  S +  
Sbjct: 268 ISGGKLLEYSAHMVPEGGLAMVPQLVNEGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAA 327

Query: 219 AEAIVAGSANGTRLVDESDLRKYLAEFDR 305
           A  ++A           S L +Y  E ++
Sbjct: 328 ATTVIAAKERAD--FSASSLAQYKRELEQ 354

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>COQ6_DROME (Q9VMQ5) Putative ubiquinone biosynthesis monooxgenase COQ6 (EC|
           1.14.13.-)
          Length = 477

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +3

Query: 120 VSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRLVDESDLRKY 287
           V     LVGDAA  V   +G+G+       R   E++ AG+  G +L D+  L KY
Sbjct: 365 VCNGAALVGDAAHRVHPLAGQGVNLGFSDVRYLVESLAAGAYAGFKLGDKQHLIKY 420

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>Y532_METJA (Q57952) Hypothetical protein MJ0532 precursor|
          Length = 391

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +3

Query: 42  AKDKIEGGKIIRVEAHPIP-EHPRPKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMC 218
           AKD+++    I  +    P   P  K  +  + +VGDAAG ++  +G GIY A   G + 
Sbjct: 243 AKDRLKDATPIEFKVGGAPVSGPIEKTYTDGLLVVGDAAGQISPLTGGGIYLAMDCGLIA 302

Query: 219 AEAIVAGSANGTRLVDESDLRKY 287
            E  VA  A       E  L++Y
Sbjct: 303 GE--VASKAIKLNDWSEETLKEY 323

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>PHLPP_HUMAN (O60346) PH domain leucine-rich repeat-containing protein|
           phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat
           protein phosphatase) (Pleckstrin homology
           domain-containing family E protein 1) (Suprachiasmatic
           nucleus circadian oscillatory
          Length = 1717

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 14  EVPGRHPP-PRQGQDRGRQDHPRRGSPHPRAPQAQEGVGACDTGRRRGGVRDQVLRRGDL 190
           E PG  PP P  G+  G     RRG+P P A  A    GA       GG    +LRRG L
Sbjct: 73  EAPGEAPPGPLPGRAGGAGRRRRRGAPQPIAGGAAPVPGA------GGGANSLLLRRGRL 126

Query: 191 LR 196
            R
Sbjct: 127 KR 128

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>ETFD_SCHPO (P87111) Probable electron transfer flavoprotein-ubiquinone|
           oxidoreductase, mitochondrial precursor (EC 1.5.5.1)
           (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF
           dehydrogenase) (Electron-transferring-flavoprotein
           dehydrogenase)
          Length = 632

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +3

Query: 54  IEGGKIIRVEAHPIPE---HPRPKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAE 224
           ++GGK +   A  + E      PK V     L+G +AG+V     +G + A KSG + A+
Sbjct: 371 LKGGKCLEYAARALNEGGYQAIPKLVFPGGALIGCSAGFVNVAKIKGTHTAMKSGIVAAD 430

Query: 225 AIV 233
           AIV
Sbjct: 431 AIV 433

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>FIXC_AZOCA (P26484) Protein fixC|
          Length = 435

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +3

Query: 54  IEGGKIIRVEAHPIPE---HPRPKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAE 224
           IEG ++    AH IPE      P+       +VGDAA        EG   A  SGR+ AE
Sbjct: 271 IEGSEVKEYAAHLIPEGGFKAIPQLFGDGWVVVGDAAQLNNAVHREGSNLAMTSGRIAAE 330

Query: 225 AI 230
           AI
Sbjct: 331 AI 332

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>FIXC_SALTY (Q8ZRW9) Protein fixC|
          Length = 428

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = +3

Query: 54  IEGGKIIRVEAHPIPE---HPRPKRVSGRVTLVGDAAGYVTKC--SGEGIYFAAKSGRMC 218
           I GGK++   AH +PE   + +P+ V   V + GDAAG       +  G+  A  +G   
Sbjct: 268 IAGGKLVEYAAHVVPEAGMNMQPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAISAGEAA 327

Query: 219 AEAIVA 236
           A+ +++
Sbjct: 328 AKTVLS 333

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>FIXC_SALTI (Q8Z9K9) Protein fixC|
          Length = 428

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = +3

Query: 54  IEGGKIIRVEAHPIPE---HPRPKRVSGRVTLVGDAAGYVTKC--SGEGIYFAAKSGRMC 218
           I GGK++   AH +PE   + +P+ V   V + GDAAG       +  G+  A  +G   
Sbjct: 268 IAGGKLVEYAAHVVPEAGMNMQPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAISAGEAA 327

Query: 219 AEAIVA 236
           A+ +++
Sbjct: 328 AKTVLS 333

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>ETFD_YEAST (Q08822) Probable electron transfer flavoprotein-ubiquinone|
           oxidoreductase, mitochondrial precursor (EC 1.5.5.1)
           (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF
           dehydrogenase) (Electron-transferring-flavoprotein
           dehydrogenase)
          Length = 631

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = +3

Query: 54  IEGGKIIRVEAHPIPE---HPRPKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAE 224
           +EGGK I   A  + E      PK       LVG +AG++     +G + A KSG + AE
Sbjct: 350 LEGGKCIAYAARALNEGGLQSVPKLNFPGGVLVGASAGFMNVPKIKGTHTAMKSGLLAAE 409

Query: 225 AIVAGSANGTRLVDESDLRKYLAEFDR 305
           +I         L +  D    +A FD+
Sbjct: 410 SIFESIKGLPVLEEVEDEDAKMAMFDK 436

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>CO4A2_MOUSE (P08122) Collagen alpha-2(IV) chain precursor|
          Length = 1707

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
 Frame = +2

Query: 5   GTREVPGRHPPPRQGQD--RGRQDHPRR-------GSPHPRAPQAQEGVGACDTGRRR-- 151
           GT+  PG   PP QG    +GR+  P         G P P  P    G   CDTG +R  
Sbjct: 605 GTKGFPGDIGPPGQGLPGPKGRRGFPGDAGLPGPPGFPGPPGPPGTPGQRDCDTGVKRPI 664

Query: 152 GGVRDQVLRRG 184
           GG +  V++ G
Sbjct: 665 GGGQQVVVQPG 675

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>CH10_PARDE (Q9Z463) 10 kDa chaperonin (Protein Cpn10) (groES protein)|
          Length = 95

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 27/92 (29%), Positives = 45/92 (48%)
 Frame = +3

Query: 33  RLRAKDKIEGGKIIRVEAHPIPEHPRPKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGR 212
           R+++ +K +GG II       P+  + K   G +T VG+ A    K SGE I  A K+G 
Sbjct: 14  RVQSDEKTKGGLII-------PDSAKEKPAEGEITSVGEGA---RKDSGELIAPAVKAG- 62

Query: 213 MCAEAIVAGSANGTRLVDESDLRKYLAEFDRL 308
              + ++ G  +GT +  + +    + E D L
Sbjct: 63  ---DRVLFGKWSGTEVTVDGEELLIMKESDIL 91

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>FIXC_BRAJA (P10331) Protein fixC|
          Length = 435

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
 Frame = +3

Query: 54  IEGGKIIRVEAHPIPE---HPRPKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAE 224
           I G ++    AH IPE      P+       +VGDAA        EG   A  SGR+ AE
Sbjct: 271 IAGSEVKEYSAHLIPEGGYKSIPQLYGEGWVVVGDAAQLNNAVHREGSNLAMTSGRIAAE 330

Query: 225 AIVAGSANG-----------TRLVDES----DLRKY 287
           AI    + G            +++D+S    DL+KY
Sbjct: 331 AIGLVKSRGEPMSATNLSIYKKMLDDSFVIKDLKKY 366

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>FIXC_SHIFL (Q83SQ7) Protein fixC|
          Length = 428

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +3

Query: 54  IEGGKIIRVEAHPIPE---HPRPKRVSGRVTLVGDAAGYVTKC--SGEGIYFAAKSGRMC 218
           I GGK++   AH +PE   +  P+ V   V + GDAAG       +  G+  A  +G   
Sbjct: 268 IAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAA 327

Query: 219 AEAIVA 236
           A+ +++
Sbjct: 328 AKTVLS 333

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>FIXC_ECOLI (P68644) Protein fixC|
          Length = 428

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +3

Query: 54  IEGGKIIRVEAHPIPE---HPRPKRVSGRVTLVGDAAGYVTKC--SGEGIYFAAKSGRMC 218
           I GGK++   AH +PE   +  P+ V   V + GDAAG       +  G+  A  +G   
Sbjct: 268 IAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAA 327

Query: 219 AEAIVA 236
           A+ +++
Sbjct: 328 AKTVLS 333

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>FIXC_ECOL6 (P68645) Protein fixC|
          Length = 428

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +3

Query: 54  IEGGKIIRVEAHPIPE---HPRPKRVSGRVTLVGDAAGYVTKC--SGEGIYFAAKSGRMC 218
           I GGK++   AH +PE   +  P+ V   V + GDAAG       +  G+  A  +G   
Sbjct: 268 IAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAA 327

Query: 219 AEAIVA 236
           A+ +++
Sbjct: 328 AKTVLS 333

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>FIXC_ECO57 (Q7AHT0) Protein fixC|
          Length = 428

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +3

Query: 54  IEGGKIIRVEAHPIPE---HPRPKRVSGRVTLVGDAAGYVTKC--SGEGIYFAAKSGRMC 218
           I GGK++   AH +PE   +  P+ V   V + GDAAG       +  G+  A  +G   
Sbjct: 268 IAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAA 327

Query: 219 AEAIVA 236
           A+ +++
Sbjct: 328 AKTVLS 333

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>VP2_BRD (P35934) Structural core protein VP2|
          Length = 908

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
 Frame = +3

Query: 240 SANGTRLVDESDLRKYLAEFDRLYWPTYKVLDILQK----------VFYRSNAAREAFVE 389
           +AN    V+   L  + A + RL  P  ++ D+  +          ++ RS   +++   
Sbjct: 626 TANSESFVEARPLDTWRAVYPRLPEPVRQIFDLTGQHSFVTGSDIGLWLRSPLVQDSLFL 685

Query: 390 MCADDYVQRM--------TFDSYLYKRVVPGNPIEDIK 479
           +CA    Q +        T D Y++++ +PG P+ED++
Sbjct: 686 LCARTAWQAVDDPADIGFTRDVYIHRQPIPGYPLEDVR 723

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>XRN2_MOUSE (Q9DBR1) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (Protein Dhm1)|
          Length = 951

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 20   PGRHPPPRQGQDRGRQDHPRRGSPHPRAP 106
            PG +PP R     GRQ +PR G  +P  P
Sbjct: 915  PGGYPPRRDDHRGGRQGYPREGRKYPLPP 943

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>HIS5_NEIG1 (Q5FA21) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 212

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 659 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 501
           LKSVR+A  L   +     S +P R+S    V    QG +P   A   RGG DEA
Sbjct: 17  LKSVRTAGQLAGKNTKIFLSGDPDRVSRADKVIFPGQGAMPDCMAALTRGGLDEA 71

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>ETFD_PSEAE (Q9HZP5) Electron transfer flavoprotein-ubiquinone oxidoreductase|
           (EC 1.5.5.1) (ETF-QO) (ETF-ubiquinone oxidoreductase)
           (ETF dehydrogenase) (Electron-transferring-flavoprotein
           dehydrogenase)
          Length = 551

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
 Frame = +3

Query: 45  KDKIEGGKIIRVEAHPIPE---HPRPKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRM 215
           K  +EGGK +   A  I +   +  PK V     L+G   G +     +G + A KSG +
Sbjct: 290 KQYLEGGKRVAYGARAICKGGLNSLPKMVFPGGALIGCDLGTLNFAKIKGSHTAMKSGML 349

Query: 216 C----AEAIVAGSANGTRLVDESDLRKYLAEFDRLY 311
                AEA+ AG   G  L    D  K    +D L+
Sbjct: 350 AADAIAEALAAGREGGDELSSYVDAFKASWLYDELF 385

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>COQ6_HUMAN (Q9Y2Z9) Ubiquinone biosynthesis monooxgenase COQ6 (EC 1.14.13.-)|
          Length = 468

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 23/81 (28%), Positives = 34/81 (41%)
 Frame = +3

Query: 120 VSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRLVDESDLRKYLAEF 299
           V  RV L+GDAA  V   +G+G+          A  +   + NG  L   S L  Y  E 
Sbjct: 357 VRPRVALIGDAAHRVHPLAGQGVNMGFGDISSLAHHLSTAAFNGKDLGSVSHLTGYETER 416

Query: 300 DRLYWPTYKVLDILQKVFYRS 362
            R         D+L++++  S
Sbjct: 417 QRHNTALLAATDLLKRLYSTS 437

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>UL61_HCMVA (P16818) Hypothetical protein UL61|
          Length = 431

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = +2

Query: 11  REVPG--RHPPPRQGQDRGRQDHPRRGSPHPRAPQAQEGVGA-CDTGRRRGG 157
           R  PG  R P P  G++RG    P  GSP         G G     GRR GG
Sbjct: 251 RRSPGAARDPGPEPGEERGGGGKPPLGSPRATDGNRDPGAGVPARPGRRMGG 302

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>IF2_MYCTU (P65131) Translation initiation factor IF-2|
          Length = 900

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
 Frame = +2

Query: 20  PGRHP---PPRQGQDRGRQDHPRRGSPHPRAPQAQEGVGACDTG---RRRGGV 160
           PG  P   PPR G   G    PR G+P P       G G  D G    R GGV
Sbjct: 185 PGASPGSMPPRPGGAVGGARPPRPGAPRPGGRPGAPGAGRSDAGGGNYRGGGV 237

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>IF2_MYCBO (P65132) Translation initiation factor IF-2|
          Length = 900

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
 Frame = +2

Query: 20  PGRHP---PPRQGQDRGRQDHPRRGSPHPRAPQAQEGVGACDTG---RRRGGV 160
           PG  P   PPR G   G    PR G+P P       G G  D G    R GGV
Sbjct: 185 PGASPGSMPPRPGGAVGGARPPRPGAPRPGGRPGAPGAGRSDAGGGNYRGGGV 237

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>FIXC_RHISN (Q53208) Protein fixC|
          Length = 435

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
 Frame = +3

Query: 54  IEGGKIIRVEAHPIPE---HPRPKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAE 224
           + G +I    AH IPE      P+       +VGDAA        EG   A  SGR+  E
Sbjct: 271 LAGSEIKEYAAHLIPEGGFKAIPQLFGDGWVVVGDAAQLNNAVHREGSNLAMTSGRIAGE 330

Query: 225 AIVAGSANGTRLVDESDLRKYLAEFDRLY 311
           AI A  +    +  + +L  Y A  D+ +
Sbjct: 331 AIAAIKSRKHPMTSD-NLSLYKAMLDKSF 358

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>HIS5_NEIMA (Q9JVH3) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 212

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 659 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 501
           LKSVR+A  L   +     S +P R+S    V    QG +P   A   RGG DEA
Sbjct: 17  LKSVRTAGQLAGKNVEIFLSGDPERVSRADKVIFPGQGAMPDCMAALTRGGLDEA 71

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>LEU2_STAS1 (Q49Z14) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 456

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 39/145 (26%), Positives = 52/145 (35%), Gaps = 25/145 (17%)
 Frame = +3

Query: 156 GYVTKCSGEGIYFAAKSGRM--CAEAIVAGSANGTRLVDESDL-----RKYL-------- 290
           GY  + SGE I   +   RM  C  AI AG+  G    DE+       R Y         
Sbjct: 197 GYALEFSGETIRSLSMEARMTICNMAIEAGAKYGMMAPDETTFEYVKGRPYATNYKYDID 256

Query: 291 ----------AEFDRLYWPTYKVLDILQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLY 440
                     AEFDR+   T  V D+  +V + +N            +        +Y Y
Sbjct: 257 AWRELYTDEDAEFDRVI--TLDVTDLEPQVTWGTNPEMGVSFNTPFPEIQNVNDERAYNY 314

Query: 441 KRVVPGNPIEDIKLAVNTIGSLVRA 515
             + PG   EDI L    +GS   A
Sbjct: 315 MGLQPGQKAEDIDLGYVFLGSCTNA 339

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>PRPC_HUMAN (P02810) Salivary acidic proline-rich phosphoprotein 1/2 precursor|
           (PRP-1/PRP-2) (Parotid proline-rich protein 1/2)
           (Pr1/Pr2) (Protein C) (Parotid acidic protein) (Pa)
           (Parotid isoelectric focusing variant protein) (PIF-S)
           (Parotid double-band
          Length = 166

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +2

Query: 23  GRHPPPRQGQDRG---RQDHPRRGSPHPRAPQAQEG 121
           G HPPP QG+ +G   +  HPR     P+ P  Q G
Sbjct: 98  GGHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGG 133

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>H2B2_STRPU (P16887) Histone H2B.2, sperm|
          Length = 143

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = +2

Query: 62  RQDHPRRGSPHPRAPQAQEGVGACDTGRRRGGVRDQVLRR 181
           R+  PRRGSP  +A   + G GA   G  +GG R  V+RR
Sbjct: 10  RKGSPRRGSPSRKASPKRGGKGAKRAG--KGGRRRNVVRR 47

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>H2B3_PARAN (P02292) Histone H2B.3, sperm|
          Length = 148

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +2

Query: 38  PRQGQDRGRQDHPRRGSPHPRAPQAQEGVGACDTGRRRGGVRDQVLRR 181
           PR+G  R  +  PR+GSP  +A   + G GA   G  +GG R +V++R
Sbjct: 9   PRKGSPR--KGSPRKGSPSRKASPKRGGKGAKRAG--KGGRRRRVVKR 52

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>LEU2_VIBPA (Q87SS9) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 471

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
 Frame = +3

Query: 120 VSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRM--CAEAIVAGSANGTRLVDESDL----- 278
           + G+ T  G   GYV +  GE I   +  GRM  C  AI  G+  G    DE+       
Sbjct: 187 IIGKTTAAG-GTGYVVEFCGEAITDLSMEGRMTVCNMAIELGAKAGLIAPDETTFEYIKG 245

Query: 279 RKYL---AEFDRL--YWPTYK 326
           RK+    A+FD    YW T K
Sbjct: 246 RKFSPQGADFDAAVEYWKTLK 266

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>PAR3L_HUMAN (Q8TEW8) Amyotrophic lateral sclerosis 2 chromosome region candidate|
            gene 19 protein (Partitioning-defective 3-like protein)
            (PAR3-L protein) (PAR3-beta)
          Length = 1205

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +2

Query: 20   PGRHPPPRQGQDRG--RQDHPRRGSPHPRAPQAQEGVGACDTGR--RRGGVRDQ 169
            P  +PPP   Q +G  RQD P     H R P  QE      TGR   RGG  DQ
Sbjct: 1140 PQHYPPPPAPQHKGPFRQDVPPSPPQHQRMPAYQE------TGRPGPRGGSPDQ 1187

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>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
 Frame = +2

Query: 11  REVPGRHP---PPRQGQDRGRQDHPRRGSPHPRAPQAQEGVGACDTGRRRGGVRDQVLRR 181
           R  P  HP   PPR G   G    PR  +P P+AP+   G      G   GG    V R 
Sbjct: 188 RPGPRPHPGMMPPRPGASAGGP--PRPQAPRPQAPRPGPGTAGGRPGSSAGGPPRPVPRP 245

Query: 182 G 184
           G
Sbjct: 246 G 246

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>PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)|
          Length = 296

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 5   GTREVPGRHPPPRQG-QDRGRQDHPRRGSPHPRAPQ 109
           G ++ P + PPP  G Q R  Q  P  G P PR PQ
Sbjct: 106 GPQQRPPQGPPPPGGPQQRPPQGPPPPGGPQPRPPQ 141



 Score = 30.0 bits (66), Expect = 6.7
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
 Frame = +2

Query: 14  EVPGRHPPPRQGQDR-----GRQDHPRRGSPHPRAPQ 109
           ++P + PPP   Q R      +Q  P  G P PR PQ
Sbjct: 7   QIPNQRPPPSGSQPRPPVNGSQQGPPPPGGPQPRPPQ 43



 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 5   GTREVPGRHPPPRQG-QDRGRQDHPRRGSPHPRAPQ 109
           G +  P + PPP  G Q R  Q  P  G P PR PQ
Sbjct: 217 GPQPRPTQGPPPTGGPQQRPPQGPPPPGGPQPRPPQ 252



 Score = 29.6 bits (65), Expect = 8.7
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +2

Query: 20  PGRHPPPRQGQDRGRQDHPRRGSPHPRAPQAQEGVG 127
           P   PPP   Q R  Q  P  G PHPR  Q     G
Sbjct: 182 PQSPPPPGGPQPRPPQGPPPPGGPHPRPTQGPPPTG 217

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>FABZ_PARUW (Q6ME73) (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase|
           (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase)
          Length = 154

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = +3

Query: 156 GYVTKCSGEGIYFAAKSGRMCAEAIV-----AGSANGTRLVDESDL 278
           G V    GEG++F++K GR+ AEA+V     A +  G   VD+S +
Sbjct: 109 GDVLHLKGEGLHFSSKGGRIKAEALVNQKIAAEAEIGFVFVDKSQI 154

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>EVX2_HUMAN (Q03828) Homeobox even-skipped homolog protein 2 (EVX-2)|
          Length = 476

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +3

Query: 144 GDAAGYVTKCSGEGI-YFAAKSGRMCAEAIVAGSANGTRLVDESDLRKYLAEFDRLYWPT 320
           G AAG  T  SG G+      SG     A + GS +G        +R+Y   F R     
Sbjct: 148 GSAAGTTTSASGSGLGSLHGGSGGSGGSAALGGSGSGA-----DQVRRYRTAFTR----- 197

Query: 321 YKVLDILQKVFYRSN 365
            + +  L+K FYR N
Sbjct: 198 -EQIARLEKEFYREN 211

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>PHLPP_RAT (Q9WTR8) PH domain leucine-rich repeat protein phosphatase (EC|
           3.1.3.16) (Pleckstrin homology domain-containing family
           E protein 1) (Suprachiasmatic nucleus circadian
           oscillatory protein)
          Length = 1696

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +2

Query: 14  EVPGRHPP-PRQGQDRGRQDHPRRGSPHPRAPQAQEGVGACDTGRRRGGVRDQVLRRGDL 190
           E P   PP P  G+  G     RRG P P A       GA       GG    +LRRG L
Sbjct: 54  EAPCEAPPGPLPGRAGGTGRRRRRGVPQPAAG------GAAPVTAAGGGANSLLLRRGRL 107

Query: 191 LR 196
            R
Sbjct: 108 KR 109

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>HIS5_NEIMB (Q9K0H2) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 212

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 659 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 501
           LKSVR+A  L   +     S +P R+S    V    QG +P   A  +R G DEA
Sbjct: 17  LKSVRTAGQLAGKNTEIFLSGDPDRVSRADKVIFPGQGAMPDCMAALKRDGLDEA 71

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>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein|
           phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat
           protein phosphatase) (Pleckstrin homology
           domain-containing family E protein 1) (Suprachiasmatic
           nucleus circadian oscillatory
          Length = 1687

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +2

Query: 14  EVPGRHPP-PRQGQDRGRQDHPRRGSPHPRAPQAQEGVGACDTGRRRGGVRDQVLRRGDL 190
           E P   PP P  G+  G     RRG+P P A       GA       GG    +L+RG L
Sbjct: 53  EAPCEAPPGPLPGRAGGTGRRRRRGAPQPAAG------GAAPVPAAGGGANSLLLKRGRL 106

Query: 191 LR 196
            R
Sbjct: 107 KR 108

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>ETFD_CAEEL (Q11190) Probable electron transfer flavoprotein-ubiquinone|
           oxidoreductase, mitochondrial precursor (EC 1.5.5.1)
           (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF
           dehydrogenase) (Electron-transferring-flavoprotein
           dehydrogenase) (Lethal protein 72
          Length = 597

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +3

Query: 51  KIEGGKIIRVEAHPIPE---HPRPKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCA 221
           ++EGGK I   A  + E      PK       LVG +AG++     +G + A KSG + A
Sbjct: 333 QLEGGKRIGYGARALNEGGFQSIPKLHFPGGCLVGCSAGFLNVAKLKGTHNAMKSGMVAA 392

Query: 222 EAI 230
           E+I
Sbjct: 393 ESI 395

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>CHSS3_HUMAN (Q70JA7) Chondroitin sulfate synthase 3 (EC 2.4.1.175)|
           (Glucuronosyl-N-acetylgalactosaminyl-proteoglycan
           4-beta-N-acetylgalactosaminyltransferase II)
           (Chondroitin synthase 2)
           (N-acetylgalactosaminyl-proteoglycan
           3-beta-glucuronosyltransferase
          Length = 882

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +2

Query: 11  REVPGRHPPPRQGQDRGRQDHPRRGSPHPRA----PQAQEGVGACDTGRRRGG 157
           R  P + PPP Q + RGR+     G P   A    P+ ++G  A   G+RR G
Sbjct: 99  RSSPWQQPPPLQQRRRGREPEGATGLPGAPAAEGEPEEEDGGAA---GQRRDG 148

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>Y34F_DROME (Q9W5D0) Hypothetical protein CG12467 in chromosome 1|
          Length = 1561

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 32  PPPRQGQDRGRQDHPRRGSPHPRAPQAQEGVGACDTGRRRGG 157
           PPP+Q Q      HP +  P P  PQ Q+    C    +  G
Sbjct: 50  PPPQQAQHPHSHSHPHQ--PIPSHPQEQQAKNHCSPSHQASG 89

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>LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain protein 6)|
          Length = 624

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
 Frame = +2

Query: 26  RHPPPR-------QGQDRGRQDHPRRGSPHPRAPQAQEGVGACDTG 142
           R PPPR           R RQ H RRGS H      + G   CD G
Sbjct: 501 RSPPPRTPSCHHHHHHRRRRQRHRRRGSHHHHHHPGRHGHHRCDLG 546

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>VIOC_CHRVO (Q9S3U9) Probable monooxygenase vioC (EC 1.-.-.-)|
          Length = 429

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
 Frame = +3

Query: 126 GRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRLVDE-SDLRKYLAE-F 299
           G V L+GDAA       G+G+  A +  R   E +     +  +   E ++LRK  A+  
Sbjct: 299 GNVLLLGDAAHATAPFLGQGMNMALEDARTFVELLDRHQGDQDKAFPEFTELRKVQADAM 358

Query: 300 DRLYWPTYKVLDILQKVFY-RSNAAR---EAFVEMCADDYVQRMTFDSYLYKRV 449
             +    Y VL     +F+ R+   R     F  +   D  +++ F S  Y R+
Sbjct: 359 QDMARANYDVLSCSNPIFFMRARYTRYMHSKFPGLYPPDMAEKLYFTSEPYDRL 412

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>Y1300_SYNY3 (P72835) Hypothetical protein slr1300|
          Length = 414

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = +3

Query: 120 VSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRLVDESDLRKYLAEF 299
           V  R+ LVGDAA       G+G+    + G   A+ I    + G      + L++Y    
Sbjct: 286 VQPRLALVGDAAHCCHPVGGQGLNLGIRDGAALAQVIATAHSQGEDWGSLAVLKRYEHWR 345

Query: 300 DRLYWPTYKVLDILQKVF 353
               W      D+L + F
Sbjct: 346 KPENWLILGFTDLLDRFF 363


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,709,310
Number of Sequences: 219361
Number of extensions: 1549812
Number of successful extensions: 6826
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 6181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6799
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result