ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd17o21 |
|---|---|
| Clone Library Name | barley_pub |
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 114 bits (284), Expect = 3e-25 Identities = 58/136 (42%), Positives = 89/136 (65%) Frame = +2 Query: 146 KEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKH 325 K Q+++++ + VLY+GH+P G +E Q++ +F+QFG V R+R++R++KTG SK Sbjct: 28 KVQQVKKRPQTGQTLSPGVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKG 87 Query: 326 YGFIEFENPEVAKIVADEMNNYLLFEHTLQIAPVPLEKVHAKLWKGVRKGFVPVDRVAIE 505 YGF+EFE EVAKIVA+ MNNYL+ E ++ +P EKVH KL+ G GF A+ Sbjct: 88 YGFVEFECDEVAKIVAETMNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKYPAV- 146 Query: 506 RKRLSKDKTVEEHKRM 553 R +K T ++ K++ Sbjct: 147 -TRYNKTHTEDDVKKV 161
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 110 bits (275), Expect = 3e-24 Identities = 59/121 (48%), Positives = 79/121 (65%), Gaps = 2/121 (1%) Frame = +2 Query: 200 VLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADE 379 V+YIGHIP YE Q++ +F QFG V R+R++R++KTG SK Y ++EFE EVAKIVAD Sbjct: 42 VIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADT 101 Query: 380 MNNYLLFEHTLQIAPVPLEKVHAKLWKGVRKGFVPVDRVAIER--KRLSKDKTVEEHKRM 553 MNNYL E L+ VP EKVH +L+ G F + A+ R KR S+ + + +RM Sbjct: 102 MNNYLFCERLLKCEFVPPEKVHPRLFIGCTAKFRKPTKPAVSRYNKRRSEAEQKKMTQRM 161 Query: 554 L 556 L Sbjct: 162 L 162
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 108 bits (269), Expect = 2e-23 Identities = 60/142 (42%), Positives = 86/142 (60%), Gaps = 2/142 (1%) Frame = +2 Query: 140 EGKEQRIREKQLEEPENTAT--VLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTG 313 E +Q++ + + + N T V+YIGHIP E Q+Q +F QFG V R+R++R++KTG Sbjct: 20 EDFQQKVHDIRRKRKANALTPGVIYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTG 79 Query: 314 KSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAPVPLEKVHAKLWKGVRKGFVPVDR 493 SK Y ++E+E EVAKIVAD MNNYL E L+ V EKVH +L+ G F + Sbjct: 80 NSKGYAYVEYECDEVAKIVADTMNNYLFCERLLKCEFVTPEKVHPRLFIGCNTRFRKPTK 139 Query: 494 VAIERKRLSKDKTVEEHKRMLE 559 A+ R ++K EE K+M + Sbjct: 140 PAVTRYNSKRNK--EEVKKMTQ 159
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 105 bits (261), Expect = 1e-22 Identities = 52/139 (37%), Positives = 84/139 (60%) Frame = +2 Query: 161 REKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIE 340 + K + E + ++Y+ +PHGF+E ++ +F QFG +K VR+ARN+KTG S+HYGF+E Sbjct: 79 KSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLE 138 Query: 341 FENPEVAKIVADEMNNYLLFEHTLQIAPVPLEKVHAKLWKGVRKGFVPVDRVAIERKRLS 520 F N E A I + MNNYLL H LQ+ +P KL+K ++ V V++ + + Sbjct: 139 FVNKEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKLYKYKKR--VLVEKGITKPVKQL 196 Query: 521 KDKTVEEHKRMLEGNCKAG 577 KD ++H+ ++ K+G Sbjct: 197 KDNMKQKHEERIKKLAKSG 215
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 98.2 bits (243), Expect = 2e-20 Identities = 54/136 (39%), Positives = 87/136 (63%) Frame = +2 Query: 152 QRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYG 331 +RI +++ +E + T V+Y+ H+P+ E Q+ +F QFG V R R++R+++TG SK Y Sbjct: 31 KRITQRKKQE-QLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYA 89 Query: 332 FIEFENPEVAKIVADEMNNYLLFEHTLQIAPVPLEKVHAKLWKGVRKGFVPVDRVAIERK 511 F+EFE+ +VAKIVA+ MNNYL E L+ +P EKVH +L+K F ++ K Sbjct: 90 FVEFESEDVAKIVAETMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSV--K 147 Query: 512 RLSKDKTVEEHKRMLE 559 R ++++T+ + RM E Sbjct: 148 RYNRNRTLTQKLRMEE 163
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 85.5 bits (210), Expect = 1e-16 Identities = 41/107 (38%), Positives = 69/107 (64%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK 316 ++G+ ++ ++K+ E+ V+Y+GH+P E + + QFG + R R++R+++TG Sbjct: 29 IQGRTKKPQQKKKEKLNRG--VVYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGN 86 Query: 317 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAPVPLEKVHAKLW 457 SK Y F+EFE+ +VAKIVA+ M+NYL E L +P +KVH L+ Sbjct: 87 SKGYAFVEFESEDVAKIVAETMDNYLFGERLLSCKFMPRKKVHKDLF 133
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 57.8 bits (138), Expect = 2e-08 Identities = 24/75 (32%), Positives = 45/75 (60%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 LY+G + ED ++G F+ FG ++ +++ + +TG+SK YGFI F + E AK +++ Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 383 NNYLLFEHTLQIAPV 427 N + L +++ V Sbjct: 312 NGFELAGRPMKVGHV 326
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 57.8 bits (138), Expect = 2e-08 Identities = 24/75 (32%), Positives = 45/75 (60%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 LY+G + ED ++G F+ FG ++ +++ + +TG+SK YGFI F + E AK +++ Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 383 NNYLLFEHTLQIAPV 427 N + L +++ V Sbjct: 312 NGFELAGRPMKVGHV 326
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 55.1 bits (131), Expect = 2e-07 Identities = 23/75 (30%), Positives = 43/75 (57%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 LY+G + ED ++G F+ FG + + + ++ TG+SK YGFI F + E A+ +++ Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324 Query: 383 NNYLLFEHTLQIAPV 427 N + L +++ V Sbjct: 325 NGFELAGRPMRVGHV 339 Score = 29.3 bits (64), Expect = 9.0 Identities = 15/57 (26%), Positives = 26/57 (45%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF 343 L E A ++ + ++ FF G V+ VRI +R + +SK ++EF Sbjct: 158 LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 214
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 52.8 bits (125), Expect = 8e-07 Identities = 32/117 (27%), Positives = 50/117 (42%) Frame = +2 Query: 176 EEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE 355 E EN L++ I ED++Q F +FG V VRI R T S+ +GF+ F E Sbjct: 94 EGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153 Query: 356 VAKIVADEMNNYLLFEHTLQIAPVPLEKVHAKLWKGVRKGFVPVDRVAIERKRLSKD 526 A D +N+ + L + + H+ P + +R+R S+D Sbjct: 154 EATSAIDNLNSQEFYGRVLNVQKAKRSRPHSP---------TPGKYMGYDRRRNSRD 201
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 51.2 bits (121), Expect = 2e-06 Identities = 23/63 (36%), Positives = 36/63 (57%) Frame = +2 Query: 200 VLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADE 379 V+++G+IP+ E QM F Q G VK ++ + +TG K YGF EF + E + + Sbjct: 8 VVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRK 67 Query: 380 MNN 388 +NN Sbjct: 68 LNN 70
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 51.2 bits (121), Expect = 2e-06 Identities = 24/79 (30%), Positives = 49/79 (62%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 ++IG +P+ E ++Q +F +FG ++++RI +++ T KSK Y FI F++P +K+ E+ Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEI 168 Query: 383 NNYLLFEHTLQIAPVPLEK 439 + + +I V +E+ Sbjct: 169 GVHRGIQIKDRICIVDIER 187
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 50.4 bits (119), Expect = 4e-06 Identities = 24/79 (30%), Positives = 43/79 (54%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G+IP+ E+Q++ F + G+V R+ +R+TGK K YGF E+++ E A + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 383 NNYLLFEHTLQIAPVPLEK 439 N L++ EK Sbjct: 78 NGREFSGRALRVDNAASEK 96
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 50.4 bits (119), Expect = 4e-06 Identities = 24/79 (30%), Positives = 43/79 (54%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G+IP+ E+Q++ F + G+V R+ +R+TGK K YGF E+++ E A + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 383 NNYLLFEHTLQIAPVPLEK 439 N L++ EK Sbjct: 78 NGREFSGRALRVDNAASEK 96
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 49.7 bits (117), Expect = 6e-06 Identities = 24/79 (30%), Positives = 42/79 (53%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G+IP+ E+Q++ F + G V R+ +R+TGK K YGF E+++ E A + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 383 NNYLLFEHTLQIAPVPLEK 439 N L++ EK Sbjct: 78 NGREFSGRALRVDNAASEK 96
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 49.7 bits (117), Expect = 6e-06 Identities = 24/79 (30%), Positives = 42/79 (53%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G+IP+ E+Q++ F + G V R+ +R+TGK K YGF E+++ E A + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 383 NNYLLFEHTLQIAPVPLEK 439 N L++ EK Sbjct: 78 NGREFSGRALRVDNAASEK 96
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 49.7 bits (117), Expect = 6e-06 Identities = 24/79 (30%), Positives = 42/79 (53%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G+IP+ E+Q++ F + G V R+ +R+TGK K YGF E+++ E A + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 383 NNYLLFEHTLQIAPVPLEK 439 N L++ EK Sbjct: 78 NGREFSGRALRVDNAASEK 96
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 49.7 bits (117), Expect = 6e-06 Identities = 24/79 (30%), Positives = 42/79 (53%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G+IP+ E+Q++ F + G V R+ +R+TGK K YGF E+++ E A + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 383 NNYLLFEHTLQIAPVPLEK 439 N L++ EK Sbjct: 78 NGREFSGRALRVDNAASEK 96
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 L E + +++G I E +++GFF ++G+VK V+I +R TG SK YGF+ F N Sbjct: 32 LPEGKIMPNTVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVSFFND 90 Query: 353 -EVAKIVADEMN 385 +V KIV ++N Sbjct: 91 VDVQKIVESQIN 102
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 48.9 bits (115), Expect = 1e-05 Identities = 22/75 (29%), Positives = 43/75 (57%) Frame = +2 Query: 161 REKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIE 340 REK+L E T +Y+ + F +++++ FF+ +G + ++ +++ GKSK +GF+ Sbjct: 171 REKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVA 229 Query: 341 FENPEVAKIVADEMN 385 FE E A+ +N Sbjct: 230 FETTEAAEAAVQALN 244 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/95 (21%), Positives = 46/95 (48%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK 316 L+ K + +++K+ E LY+ ++ +D+++ F +G + ++ + + G+ Sbjct: 269 LKRKFEELKQKRHESVFGVN--LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GR 325 Query: 317 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 421 SK +GF+ F A E+N ++ L +A Sbjct: 326 SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVA 360
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/74 (36%), Positives = 40/74 (54%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G I E+ ++ FF Q+G+VK V+I N + G SK YGFI FE E A+ + E Sbjct: 35 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIV-NDRAGVSKGYGFITFETQEDAQKILQEA 93 Query: 383 NNYLLFEHTLQIAP 424 + L I P Sbjct: 94 EKLNYKDKKLNIGP 107
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 48.1 bits (113), Expect = 2e-05 Identities = 21/63 (33%), Positives = 37/63 (58%) Frame = +2 Query: 164 EKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF 343 EK + E + +++G+I +Q++ F+ G +KR+ + +R TG K YG+IEF Sbjct: 53 EKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEF 112 Query: 344 ENP 352 E+P Sbjct: 113 ESP 115
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/74 (35%), Positives = 39/74 (52%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G I E ++ FF Q+G+VK V+I N + G SK YGF+ FE E A+ + E Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIV-NDRAGVSKGYGFVTFETQEDAQKILQEA 93 Query: 383 NNYLLFEHTLQIAP 424 + L I P Sbjct: 94 EKLNYKDKKLNIGP 107
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/74 (35%), Positives = 39/74 (52%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G I E ++ FF Q+G+VK V+I N + G SK YGF+ FE E A+ + E Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIV-NDRAGVSKGYGFVTFETQEDAQKILQEA 93 Query: 383 NNYLLFEHTLQIAP 424 + L I P Sbjct: 94 EKLNYKDKKLNIGP 107
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 47.4 bits (111), Expect = 3e-05 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF-EN 349 L E + +++G I E +++ +F+Q+G VK V+I +R TG SK YGF+ F +N Sbjct: 28 LPEGKIMPNTVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSFLDN 86 Query: 350 PEVAKIVADEMN 385 +V KIV +++ Sbjct: 87 VDVQKIVESQIS 98
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 47.0 bits (110), Expect = 4e-05 Identities = 27/103 (26%), Positives = 52/103 (50%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK 316 +E ++ EK L++ T L++ +I + ED + F +G ++ V IA + +TG+ Sbjct: 311 VETSQESEEEKSLKKIRETGR-LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQ 369 Query: 317 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAPVPLEKVH 445 SK + ++ F+N + A E++ + L I P +K H Sbjct: 370 SKGFAYVLFKNADNAATAFVELDKQIFQGRLLHILPADAKKSH 412
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 47.0 bits (110), Expect = 4e-05 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 L E + +++G I E +++ FF ++G+VK V+I +R TG SK YGF+ F N Sbjct: 32 LPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYND 90 Query: 353 -EVAKIVADEMN 385 +V KIV ++N Sbjct: 91 VDVQKIVESQIN 102
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 47.0 bits (110), Expect = 4e-05 Identities = 26/80 (32%), Positives = 44/80 (55%) Frame = +2 Query: 146 KEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKH 325 K Q+ RE +L T +YI + +++++ F +FG V++ + ++GKSK Sbjct: 174 KSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232 Query: 326 YGFIEFENPEVAKIVADEMN 385 +GF+ FE E A+ DEMN Sbjct: 233 FGFVSFERHEDAQKAVDEMN 252 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 LY+ ++ G +++++ F FG + ++ + G+SK +GF+ F +PE A EM Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 NNYLLFEHTLQIA 421 N ++ L +A Sbjct: 354 NGRIVATKPLYVA 366 Score = 33.1 bits (74), Expect = 0.62 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATV--LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKT 310 ++GK RI Q + + V ++I ++ + F FG + ++ + Sbjct: 77 IKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136 Query: 311 GKSKHYGFIEFENPEVAKIVADEMNNYLL 397 SK YGF+ FE E A+ ++MN LL Sbjct: 137 --SKGYGFVHFETQEAAERAIEKMNGMLL 163
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 46.6 bits (109), Expect = 5e-05 Identities = 18/79 (22%), Positives = 46/79 (58%) Frame = +2 Query: 185 ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK 364 E++ T L + ++P +++++ F G ++ ++ R++ TG+S YGF+ + +P+ A+ Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 365 IVADEMNNYLLFEHTLQIA 421 + +N L T++++ Sbjct: 95 KAINTLNGLRLQTKTIKVS 113 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/77 (27%), Positives = 38/77 (49%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIV 370 T +++ ++ E + F FGAV V++ R+ T K K +GF+ N + A + Sbjct: 274 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333 Query: 371 ADEMNNYLLFEHTLQIA 421 +N Y L + LQ++ Sbjct: 334 IASLNGYRLGDRVLQVS 350 Score = 34.3 bits (77), Expect = 0.28 Identities = 15/48 (31%), Positives = 27/48 (56%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFE 346 LY+ +P + +++ F Q+G + RI ++ TG S+ GFI F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 46.6 bits (109), Expect = 5e-05 Identities = 18/79 (22%), Positives = 46/79 (58%) Frame = +2 Query: 185 ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK 364 E++ T L + ++P +++++ F G ++ ++ R++ TG+S YGF+ + +P+ A+ Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 365 IVADEMNNYLLFEHTLQIA 421 + +N L T++++ Sbjct: 95 KAINTLNGLRLQTKTIKVS 113 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/77 (27%), Positives = 38/77 (49%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIV 370 T +++ ++ E + F FGAV V++ R+ T K K +GF+ N + A + Sbjct: 274 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333 Query: 371 ADEMNNYLLFEHTLQIA 421 +N Y L + LQ++ Sbjct: 334 IASLNGYRLGDRVLQVS 350 Score = 34.3 bits (77), Expect = 0.28 Identities = 15/48 (31%), Positives = 27/48 (56%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFE 346 LY+ +P + +++ F Q+G + RI ++ TG S+ GFI F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 46.6 bits (109), Expect = 5e-05 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 L E + +++G I E +++ FF ++G+VK V+I +R TG SK YGF+ F N Sbjct: 32 LPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFND 90 Query: 353 -EVAKIVADEMN 385 +V KIV ++N Sbjct: 91 VDVQKIVESQIN 102
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 46.6 bits (109), Expect = 5e-05 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 L E + +++G I E +++ FF ++G+VK V+I +R TG SK YGF+ F N Sbjct: 32 LPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFND 90 Query: 353 -EVAKIVADEMN 385 +V KIV ++N Sbjct: 91 VDVQKIVESQIN 102
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 46.6 bits (109), Expect = 5e-05 Identities = 18/79 (22%), Positives = 46/79 (58%) Frame = +2 Query: 185 ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK 364 E++ T L + ++P +++++ F G ++ ++ R++ TG+S YGF+ + +P+ A+ Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 365 IVADEMNNYLLFEHTLQIA 421 + +N L T++++ Sbjct: 95 KAINTLNGLRLQTKTIKVS 113 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/77 (27%), Positives = 38/77 (49%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIV 370 T +++ ++ E + F FGAV V++ R+ T K K +GF+ N + A + Sbjct: 275 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 334 Query: 371 ADEMNNYLLFEHTLQIA 421 +N Y L + LQ++ Sbjct: 335 IASLNGYRLGDRVLQVS 351 Score = 34.3 bits (77), Expect = 0.28 Identities = 15/48 (31%), Positives = 27/48 (56%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFE 346 LY+ +P + +++ F Q+G + RI ++ TG S+ GFI F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 4/91 (4%) Frame = +2 Query: 158 IREKQLEEPENTATV----LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKH 325 IR ++ ENT T +Y+ ++P ED+++ F +FG + + R++ +G S+ Sbjct: 212 IRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRC 270 Query: 326 YGFIEFENPEVAKIVADEMNNYLLFEHTLQI 418 +GF+ FE E A ++MN L + L + Sbjct: 271 FGFVNFECTEAAASAVEKMNGISLGDDVLYV 301 Score = 40.8 bits (94), Expect = 0.003 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 5/97 (5%) Frame = +2 Query: 146 KEQRIREKQLEEPENT-----ATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKT 310 +E+ +R K +E N LY+ ++ +++++ F ++G V ++ N + Sbjct: 310 REEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ- 368 Query: 311 GKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 421 G S+ +GF+ + NPE A EMN ++ L IA Sbjct: 369 GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIA 405 Score = 40.0 bits (92), Expect = 0.005 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = +2 Query: 257 FQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNNYLL 397 F FG + ++A + TG+SK YGF++FE E A+ D++N L+ Sbjct: 156 FSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLM 201 Score = 32.0 bits (71), Expect = 1.4 Identities = 20/72 (27%), Positives = 33/72 (45%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 LY G + E + F+ V VR+ R++ +S Y +I F NP A + + Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109 Query: 383 NNYLLFEHTLQI 418 N LF+ ++I Sbjct: 110 NYTPLFDRPIRI 121
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 46.2 bits (108), Expect = 7e-05 Identities = 23/83 (27%), Positives = 45/83 (54%) Frame = +2 Query: 170 QLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFEN 349 +++ PEN VL++ + ++ +Q F +FG + + R+++TG S Y FIEFEN Sbjct: 242 EVKPPEN---VLFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFEN 298 Query: 350 PEVAKIVADEMNNYLLFEHTLQI 418 + + +M L+ +H + + Sbjct: 299 QKDCEQAYFKMQGVLIDDHRIHV 321
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 46.2 bits (108), Expect = 7e-05 Identities = 24/83 (28%), Positives = 42/83 (50%) Frame = +2 Query: 170 QLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFEN 349 Q E PE L+I H+P F + + F FG V ++ +++T SK +GF+ ++N Sbjct: 394 QKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN 451 Query: 350 PEVAKIVADEMNNYLLFEHTLQI 418 P A+ MN + + L++ Sbjct: 452 PVSAQAAIQSMNGFQIGMKRLKV 474 Score = 43.9 bits (102), Expect = 4e-04 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 5/96 (5%) Frame = +2 Query: 176 EEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTG--KSKHYGFIEFEN 349 ++P+ A +++G +P + E ++ F+Q+GAV + I R+R +SK F+ F Sbjct: 9 DQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYT 68 Query: 350 PEVAKIVADEMNNYLL---FEHTLQIAPVPLEKVHA 448 + A + ++N + H +Q+ P EK +A Sbjct: 69 RKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNA 104 Score = 30.4 bits (67), Expect = 4.0 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 3/86 (3%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATV---LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRK 307 L G I+ K + +N A L+IG I E+ ++ F FG ++ RI R Sbjct: 85 LPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-P 143 Query: 308 TGKSKHYGFIEFENPEVAKIVADEMN 385 G S+ F+ F +A+ M+ Sbjct: 144 DGLSRGCAFVTFTTRTMAQTAIKAMH 169
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 46.2 bits (108), Expect = 7e-05 Identities = 24/83 (28%), Positives = 42/83 (50%) Frame = +2 Query: 170 QLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFEN 349 Q E PE L+I H+P F + + F FG V ++ +++T SK +GF+ ++N Sbjct: 394 QKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN 451 Query: 350 PEVAKIVADEMNNYLLFEHTLQI 418 P A+ MN + + L++ Sbjct: 452 PVSAQAAIQSMNGFQIGMKRLKV 474 Score = 43.5 bits (101), Expect = 5e-04 Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 5/96 (5%) Frame = +2 Query: 176 EEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTG--KSKHYGFIEFEN 349 ++P+ A +++G +P + E ++ F+Q+GAV + + R+R +SK F+ F Sbjct: 9 DQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYT 68 Query: 350 PEVAKIVADEMNNYLL---FEHTLQIAPVPLEKVHA 448 + A + ++N + H +Q+ P EK +A Sbjct: 69 RKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNA 104 Score = 30.4 bits (67), Expect = 4.0 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 3/86 (3%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATV---LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRK 307 L G I+ K + +N A L+IG I E+ ++ F FG ++ RI R Sbjct: 85 LPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-P 143 Query: 308 TGKSKHYGFIEFENPEVAKIVADEMN 385 G S+ F+ F +A+ M+ Sbjct: 144 DGLSRGCAFVTFTTRAMAQTAIKAMH 169
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 46.2 bits (108), Expect = 7e-05 Identities = 23/74 (31%), Positives = 38/74 (51%) Frame = +2 Query: 197 TVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVAD 376 T LY+G + + Q+ F Q G V VR+ R+ T +S YG++ F NP+ A Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95 Query: 377 EMNNYLLFEHTLQI 418 E+N L+ +++ Sbjct: 96 ELNYIPLYGKPIRV 109 Score = 38.1 bits (87), Expect = 0.019 Identities = 18/79 (22%), Positives = 41/79 (51%) Frame = +2 Query: 155 RIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGF 334 R +E+ + T +Y+ ++ +D ++ F ++G + + ++ + GKSK +GF Sbjct: 201 RRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGF 259 Query: 335 IEFENPEVAKIVADEMNNY 391 + FEN + A + +N + Sbjct: 260 VNFENADDAARAVESLNGH 278 Score = 37.0 bits (84), Expect = 0.043 Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Frame = +2 Query: 149 EQRIR-EKQLEEPENT--ATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKS 319 E R+R E+ L+E + ++ LY+ ++ +++++ F FG V ++ R+ G S Sbjct: 299 ELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTS 357 Query: 320 KHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 421 K GF+ F PE A +++ ++ L +A Sbjct: 358 KGSGFVAFATPEEATEAMSQLSGKMIESKPLYVA 391
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 46.2 bits (108), Expect = 7e-05 Identities = 26/94 (27%), Positives = 47/94 (50%) Frame = +2 Query: 164 EKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF 343 E+Q+ + L+I +I + E+ + F Q+GA++ V IA + +TGKSK + +++F Sbjct: 299 EEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQF 358 Query: 344 ENPEVAKIVADEMNNYLLFEHTLQIAPVPLEKVH 445 E A ++ + L I P +K H Sbjct: 359 LKKEDATRAYRSLDKQIFQGRLLHILPADKKKDH 392
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 46.2 bits (108), Expect = 7e-05 Identities = 21/72 (29%), Positives = 41/72 (56%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +Y+G I ED ++ F FG +K + ++ + T K K + F+E+E PE A++ ++M Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191 Query: 383 NNYLLFEHTLQI 418 N L+ +++ Sbjct: 192 NGALMGGRNIKV 203 Score = 37.0 bits (84), Expect = 0.043 Identities = 19/83 (22%), Positives = 38/83 (45%) Frame = +2 Query: 170 QLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFEN 349 +++E + +Y+ I E+ ++ F+ FG + ++A+ K YGFIE+ N Sbjct: 218 EVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYAN 277 Query: 350 PEVAKIVADEMNNYLLFEHTLQI 418 + MN + L L++ Sbjct: 278 KQAMDEAIASMNLFDLGGQLLRV 300
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 46.2 bits (108), Expect = 7e-05 Identities = 20/61 (32%), Positives = 34/61 (55%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L++G + E ++ F FG + V + ++R+T +S+ +GFI F NPE A + M Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 383 N 385 N Sbjct: 68 N 68
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 45.8 bits (107), Expect = 9e-05 Identities = 25/80 (31%), Positives = 44/80 (55%) Frame = +2 Query: 146 KEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKH 325 K ++ RE +L T +YI + +++++ F +FG V++ + ++GKSK Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232 Query: 326 YGFIEFENPEVAKIVADEMN 385 +GF+ FE E A+ DEMN Sbjct: 233 FGFVSFERHEDAQKAVDEMN 252 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 LY+ ++ G +++++ F FG + ++ + G+SK +GF+ F +PE A EM Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 NNYLLFEHTLQIA 421 N ++ L +A Sbjct: 354 NGRIVATKPLYVA 366 Score = 33.1 bits (74), Expect = 0.62 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATV--LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKT 310 ++GK RI Q + + V ++I ++ + F FG + ++ + Sbjct: 77 IKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136 Query: 311 GKSKHYGFIEFENPEVAKIVADEMNNYLL 397 SK YGF+ FE E A+ ++MN LL Sbjct: 137 --SKGYGFVHFETQEAAERAIEKMNGMLL 163
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 45.8 bits (107), Expect = 9e-05 Identities = 25/80 (31%), Positives = 44/80 (55%) Frame = +2 Query: 146 KEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKH 325 K ++ RE +L T +YI + +++++ F +FG V++ + ++GKSK Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232 Query: 326 YGFIEFENPEVAKIVADEMN 385 +GF+ FE E A+ DEMN Sbjct: 233 FGFVSFERHEDAQKAVDEMN 252 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 LY+ ++ G +++++ F FG + ++ + G+SK +GF+ F +PE A EM Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 NNYLLFEHTLQIA 421 N ++ L +A Sbjct: 354 NGRIVATKPLYVA 366 Score = 33.1 bits (74), Expect = 0.62 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATV--LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKT 310 ++GK RI Q + + V ++I ++ + F FG + ++ + Sbjct: 77 IKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136 Query: 311 GKSKHYGFIEFENPEVAKIVADEMNNYLL 397 SK YGF+ FE E A+ ++MN LL Sbjct: 137 --SKGYGFVHFETQEAAERAIEKMNGMLL 163
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 45.8 bits (107), Expect = 9e-05 Identities = 22/64 (34%), Positives = 33/64 (51%) Frame = +2 Query: 194 ATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVA 373 +T LYIG + G E ++ F F V R+ N+ TG+S+ YGF+ F + + A Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89 Query: 374 DEMN 385 MN Sbjct: 90 SAMN 93
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 45.8 bits (107), Expect = 9e-05 Identities = 21/84 (25%), Positives = 45/84 (53%) Frame = +2 Query: 167 KQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFE 346 +Q++ + + ++P ED+++ F + G V R+ IAR++ TG K + F+ FE Sbjct: 166 RQIDRNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFE 225 Query: 347 NPEVAKIVADEMNNYLLFEHTLQI 418 + + A E+N+ ++ L++ Sbjct: 226 SRDDAARAIAELNDIRMYHMVLKV 249
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 45.8 bits (107), Expect = 9e-05 Identities = 18/79 (22%), Positives = 43/79 (54%) Frame = +2 Query: 185 ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK 364 +++ T L + ++P +D+ + F G ++ ++ R++ TG+S YGF+ + +P A Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94 Query: 365 IVADEMNNYLLFEHTLQIA 421 + +N L T++++ Sbjct: 95 KAINTLNGLKLQTKTIKVS 113 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/62 (33%), Positives = 32/62 (51%) Frame = +2 Query: 236 EDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQ 415 E + F FGAV V++ R+ T K K +GF+ N + A + +N Y L E LQ Sbjct: 297 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 356 Query: 416 IA 421 ++ Sbjct: 357 VS 358 Score = 36.6 bits (83), Expect = 0.056 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFE 346 LY+ +P + +M+ F Q+G + RI ++ TG S+ GFI F+ Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFD 174
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 45.8 bits (107), Expect = 9e-05 Identities = 18/79 (22%), Positives = 43/79 (54%) Frame = +2 Query: 185 ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK 364 +++ T L + ++P +D+ + F G ++ ++ R++ TG+S YGF+ + +P A Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94 Query: 365 IVADEMNNYLLFEHTLQIA 421 + +N L T++++ Sbjct: 95 KAINTLNGLKLQTKTIKVS 113 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/62 (33%), Positives = 32/62 (51%) Frame = +2 Query: 236 EDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQ 415 E + F FGAV V++ R+ T K K +GF+ N + A + +N Y L E LQ Sbjct: 297 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 356 Query: 416 IA 421 ++ Sbjct: 357 VS 358 Score = 35.8 bits (81), Expect = 0.096 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFE 346 LY+ +P + +M+ F Q+G + RI ++ TG S+ GFI F+ Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 45.8 bits (107), Expect = 9e-05 Identities = 30/132 (22%), Positives = 63/132 (47%) Frame = +2 Query: 152 QRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYG 331 + + E E+ + L++G++ E ++ F +FG + V I R + G++ YG Sbjct: 359 REVDEISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSR-GQTSTYG 417 Query: 332 FIEFENPEVAKIVADEMNNYLLFEHTLQIAPVPLEKVHAKLWKGVRKGFVPVDRVAIERK 511 F++FEN +++ M+ ++ + ++I +LW G +VP+ +A E Sbjct: 418 FLKFENLDMSHRAKLAMSGKIIIRNPIKIGYGKATPT-TRLWVGGLGPWVPLAALAREFD 476 Query: 512 RLSKDKTVEEHK 547 R +T++ K Sbjct: 477 RFGTIRTIDYRK 488
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 45.8 bits (107), Expect = 9e-05 Identities = 23/81 (28%), Positives = 44/81 (54%) Frame = +2 Query: 140 EGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKS 319 E +E ++++ EE E AT+ ++G + ++ ++ F+ G V R+ R T +S Sbjct: 150 EDEESSNKKQKNEETEEPATI-FVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRS 208 Query: 320 KHYGFIEFENPEVAKIVADEM 382 + YG+++FEN A+ EM Sbjct: 209 RGYGYVDFENKSYAEKAIQEM 229 Score = 38.5 bits (88), Expect = 0.015 Identities = 19/69 (27%), Positives = 35/69 (50%) Frame = +2 Query: 176 EEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE 355 + P + L++G++ D + F + G V VRI + +T + K +G+++F N E Sbjct: 260 DTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNME 319 Query: 356 VAKIVADEM 382 AK D + Sbjct: 320 DAKKALDAL 328
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/80 (31%), Positives = 44/80 (55%) Frame = +2 Query: 146 KEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKH 325 K ++ RE +L T +YI + +++++ F +FG V++ + ++GKSK Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232 Query: 326 YGFIEFENPEVAKIVADEMN 385 +GF+ FE E A+ DEMN Sbjct: 233 FGFVSFERHEDAQKAVDEMN 252 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 LY+ ++ G +++++ F FG + ++ + G+SK +GF+ F +PE A EM Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 NNYLLFEHTLQIA 421 N ++ L +A Sbjct: 354 NGRIVATKPLYVA 366 Score = 33.1 bits (74), Expect = 0.62 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATV--LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKT 310 ++GK RI Q + + V ++I ++ + F FG + ++ + Sbjct: 77 IKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136 Query: 311 GKSKHYGFIEFENPEVAKIVADEMNNYLL 397 SK YGF+ FE E A+ ++MN LL Sbjct: 137 --SKGYGFVHFETQEAAERAIEKMNGMLL 163
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 45.1 bits (105), Expect = 2e-04 Identities = 25/80 (31%), Positives = 41/80 (51%) Frame = +2 Query: 146 KEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKH 325 K ++ RE +L T +YI + ++ ++ F QFG V++ R+ GKSK Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232 Query: 326 YGFIEFENPEVAKIVADEMN 385 +GF+ +E E A +EMN Sbjct: 233 FGFVSYEKHEDANKAVEEMN 252 Score = 38.9 bits (89), Expect = 0.011 Identities = 22/95 (23%), Positives = 51/95 (53%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK 316 L+ K ++++++++ + LYI ++ +++++ F FG++ ++ + G+ Sbjct: 276 LKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGR 331 Query: 317 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 421 SK +GF+ F +PE A EMN ++ L +A Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366 Score = 29.3 bits (64), Expect = 9.0 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATV--LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKT 310 ++GK RI Q + + V ++I ++ + F FG + ++ + Sbjct: 77 IKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136 Query: 311 GKSKHYGFIEFENPEVAKIVADEMNNYLL 397 SK Y F+ FE E A ++MN LL Sbjct: 137 --SKGYAFVHFETQEAADKAIEKMNGMLL 163
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 45.1 bits (105), Expect = 2e-04 Identities = 19/74 (25%), Positives = 43/74 (58%) Frame = +2 Query: 197 TVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVAD 376 T +Y+ ++P +D+++ F ++G + + +++ +G S+ +GF+ F +PE A + + Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVE 283 Query: 377 EMNNYLLFEHTLQI 418 +MN L E L + Sbjct: 284 KMNGISLGEDVLYV 297 Score = 42.0 bits (97), Expect = 0.001 Identities = 19/73 (26%), Positives = 40/73 (54%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 LY+ ++ +++++ F ++G V ++ N + G S+ +GF+ + NPE A + EM Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEM 388 Query: 383 NNYLLFEHTLQIA 421 N ++ L +A Sbjct: 389 NGKMIGRKPLYVA 401 Score = 41.2 bits (95), Expect = 0.002 Identities = 28/98 (28%), Positives = 46/98 (46%) Frame = +2 Query: 257 FQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAPVPLE 436 F FG + ++A + G+SK YGF++FE E A+ D++N LL + + + Sbjct: 152 FSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR 210 Query: 437 KVHAKLWKGVRKGFVPVDRVAIERKRLSKDKTVEEHKR 550 + A+ G F V K L K+ T +E K+ Sbjct: 211 QDRARSESGAVPSFTNV-----YVKNLPKEITDDELKK 243
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 45.1 bits (105), Expect = 2e-04 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 8/123 (6%) Frame = +2 Query: 170 QLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFEN 349 +++ PEN VL++ + ++ + F +FG + + R+++TG S Y FIEFEN Sbjct: 242 EVKPPEN---VLFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFEN 298 Query: 350 PEVAKIVADEMNNYLLFEHTLQIAPVPLEKVHAKLWK--------GVRKGFVPVDRVAIE 505 + + +M L+ +H + + ++ W+ G R GF V ++E Sbjct: 299 QKDCEQAYFKMQGVLIDDHRIHVDFSQSVSKLSESWRNATISKRSGQRGGFGGV--ASLE 356 Query: 506 RKR 514 +KR Sbjct: 357 KKR 359
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 45.1 bits (105), Expect = 2e-04 Identities = 18/72 (25%), Positives = 39/72 (54%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G +P+ E + F Q+G + + + R++KTGKSK + F+ +E+ + D Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 383 NNYLLFEHTLQI 418 N + T+++ Sbjct: 98 NGIKIKGRTIRV 109
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 44.7 bits (104), Expect = 2e-04 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 1/101 (0%) Frame = +2 Query: 164 EKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF 343 + ++ PEN VL++ + ++ ++ F +FG ++ + R+ KTG+S Y FIEF Sbjct: 232 DADIKPPEN---VLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEF 288 Query: 344 ENPEVAKIVADEMNNYLLFEHTLQIAPVPLEKVHAKL-WKG 463 E E + +M+N L+ + + V + AK+ WKG Sbjct: 289 EKEEDCEKAFFKMDNVLIDDRRIH---VDFSQSVAKVKWKG 326
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 44.7 bits (104), Expect = 2e-04 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 1/101 (0%) Frame = +2 Query: 164 EKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF 343 + ++ PEN VL++ + ++ ++ F +FG ++ + R+ KTG+S Y FIEF Sbjct: 232 DADIKPPEN---VLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEF 288 Query: 344 ENPEVAKIVADEMNNYLLFEHTLQIAPVPLEKVHAKL-WKG 463 E E + +M+N L+ + + V + AK+ WKG Sbjct: 289 EKEEDCEKAFFKMDNVLIDDRRIH---VDFSQSVAKVKWKG 326
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 44.7 bits (104), Expect = 2e-04 Identities = 17/79 (21%), Positives = 45/79 (56%) Frame = +2 Query: 185 ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK 364 +++ T L + ++P +++ + F G ++ ++ R++ TG+S YGF+ + +P+ A+ Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106 Query: 365 IVADEMNNYLLFEHTLQIA 421 + +N L T++++ Sbjct: 107 KAINTLNGLRLQTKTIKVS 125 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/77 (27%), Positives = 38/77 (49%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIV 370 T +++ ++ E + F FGAV V++ R+ T K K +GF+ N + A + Sbjct: 300 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 359 Query: 371 ADEMNNYLLFEHTLQIA 421 +N Y L + LQ++ Sbjct: 360 IASLNGYRLGDRVLQVS 376 Score = 34.7 bits (78), Expect = 0.21 Identities = 15/48 (31%), Positives = 27/48 (56%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFE 346 LY+ +P + +++ F Q+G + RI ++ TG S+ GFI F+ Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 186
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 44.7 bits (104), Expect = 2e-04 Identities = 16/48 (33%), Positives = 33/48 (68%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFE 346 +Y+G++ + E + F ++G+VKRV++ +R+TG+ + +GF+E E Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELE 50
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 44.7 bits (104), Expect = 2e-04 Identities = 16/62 (25%), Positives = 38/62 (61%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 LY+G+IP D+++ ++ GA++ + ++ +G+S+ +GF+ + E A V +++ Sbjct: 86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKL 145 Query: 383 NN 388 N+ Sbjct: 146 ND 147 Score = 42.7 bits (99), Expect = 8e-04 Identities = 22/88 (25%), Positives = 42/88 (47%) Frame = +2 Query: 134 PLEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTG 313 PLEG + + + + + +YIG++ + ++ FF + G V ++ R T Sbjct: 163 PLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTS 222 Query: 314 KSKHYGFIEFENPEVAKIVADEMNNYLL 397 KS +GF+ F + E + +NN +L Sbjct: 223 KSNGFGFVSFSSEEEVEAAIQALNNSVL 250
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/85 (29%), Positives = 43/85 (50%) Frame = +2 Query: 197 TVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVAD 376 T LY+ ++P +DQ+ F ++G + + I R++ TGK + F+ F E A+ Sbjct: 196 TNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAIS 255 Query: 377 EMNNYLLFEHTLQIAPVPLEKVHAK 451 +NN ++ E Q V L + H K Sbjct: 256 ALNN-VIPEGASQPLTVRLAEEHGK 279 Score = 35.8 bits (81), Expect = 0.096 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = +2 Query: 188 NTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF 343 + T L + ++P + ++ F+ G + RI R+ KTG S Y F++F Sbjct: 107 SNGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDF 158
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 17/103 (16%) Frame = +2 Query: 161 REKQLEEPENTATVLYIGHIPHGFY-----------------EDQMQGFFQQFGAVKRVR 289 REK++E T+ IG +P ++ ++ F +FG + + Sbjct: 215 REKEMEAEAEAVTLEMIGDLPFAHVAPPENVLFVCKLNPVTQDEDLELIFSRFGKIISCQ 274 Query: 290 IARNRKTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 418 + R+++TG S Y FIEF+N E + +M N L+ + + + Sbjct: 275 VIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHV 317
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 44.7 bits (104), Expect = 2e-04 Identities = 17/79 (21%), Positives = 45/79 (56%) Frame = +2 Query: 185 ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK 364 +++ T L + ++P +++ + F G ++ ++ R++ TG+S YGF+ + +P+ A+ Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 365 IVADEMNNYLLFEHTLQIA 421 + +N L T++++ Sbjct: 95 KAINTLNGLRLQTKTIKVS 113 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/77 (27%), Positives = 38/77 (49%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIV 370 T +++ ++ E + F FGAV V++ R+ T K K +GF+ N + A + Sbjct: 288 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 347 Query: 371 ADEMNNYLLFEHTLQIA 421 +N Y L + LQ++ Sbjct: 348 IASLNGYRLGDRVLQVS 364 Score = 34.7 bits (78), Expect = 0.21 Identities = 15/48 (31%), Positives = 27/48 (56%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFE 346 LY+ +P + +++ F Q+G + RI ++ TG S+ GFI F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
>ABT1_HUMAN (Q9ULW3) Activator of basal transcription 1 (hABT1) (Basal| transcriptional activator) Length = 272 Score = 44.7 bits (104), Expect = 2e-04 Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 28/113 (24%) Frame = +2 Query: 134 PLEGKEQRI-REKQLEEPENTAT---------VLYIGHIPHGFYEDQMQGFFQQFGAVKR 283 PLEG EQ + E++ EE E A ++Y+GHIP F ++ +G V R Sbjct: 15 PLEGTEQTLDAEEEQEESEEAACGSKKRVVPGIVYLGHIPPRFRPLHVRNLLSAYGEVGR 74 Query: 284 V------RIARNRKT------GKSKHY------GFIEFENPEVAKIVADEMNN 388 V R R +K GK + Y G++EF + +AK VA ++N Sbjct: 75 VFFQAEDRFVRRKKKAAAAAGGKKRSYTKDYTEGWVEFRDKRIAKRVAASLHN 127
>RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif protein 10)| (DXS8237E) Length = 929 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +2 Query: 140 EGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKR-VRIARNRKTGK 316 E E+ E+ EE E + ++ + +P ED ++G Q G R VR+ RN+ +G+ Sbjct: 110 EQGEEEEEEEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQ 169 Query: 317 SKHYGFIEFEN 349 S+ + F+EF + Sbjct: 170 SRGFAFVEFSH 180
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 44.7 bits (104), Expect = 2e-04 Identities = 17/79 (21%), Positives = 45/79 (56%) Frame = +2 Query: 185 ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK 364 +++ T L + ++P +++ + F G ++ ++ R++ TG+S YGF+ + +P+ A+ Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101 Query: 365 IVADEMNNYLLFEHTLQIA 421 + +N L T++++ Sbjct: 102 KAINTLNGLRLQTKTIKVS 120 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/77 (27%), Positives = 38/77 (49%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIV 370 T +++ ++ E + F FGAV V++ R+ T K K +GF+ N + A + Sbjct: 295 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 354 Query: 371 ADEMNNYLLFEHTLQIA 421 +N Y L + LQ++ Sbjct: 355 IASLNGYRLGDRVLQVS 371 Score = 34.7 bits (78), Expect = 0.21 Identities = 15/48 (31%), Positives = 27/48 (56%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFE 346 LY+ +P + +++ F Q+G + RI ++ TG S+ GFI F+ Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 181
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/86 (27%), Positives = 45/86 (52%) Frame = +2 Query: 197 TVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVAD 376 T LY+ ++P +D+++ F ++G + + I R++ TGK + F+ F E A+ Sbjct: 171 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAIS 230 Query: 377 EMNNYLLFEHTLQIAPVPLEKVHAKL 454 +NN ++ E Q V L + H K+ Sbjct: 231 ALNN-VIPEGASQPLTVRLAEEHGKM 255 Score = 35.0 bits (79), Expect = 0.16 Identities = 17/75 (22%), Positives = 36/75 (48%) Frame = +2 Query: 197 TVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVAD 376 T L + ++P + ++ F+ G + RI ++ KTG S Y F++F + A+ Sbjct: 85 TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIK 144 Query: 377 EMNNYLLFEHTLQIA 421 +N + L+++ Sbjct: 145 SLNGVTVRNKRLKVS 159
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 44.3 bits (103), Expect = 3e-04 Identities = 20/61 (32%), Positives = 37/61 (60%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L+IG + E ++ F ++G + + + ++R+T KS+ + F+ FE+P AK VA +M Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69 Query: 383 N 385 N Sbjct: 70 N 70
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 44.3 bits (103), Expect = 3e-04 Identities = 18/72 (25%), Positives = 39/72 (54%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G +P+ E + F Q+G + + + R++KTGKSK + F+ +E+ + D Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 383 NNYLLFEHTLQI 418 N + T+++ Sbjct: 98 NGIKIKGRTIRV 109
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 44.3 bits (103), Expect = 3e-04 Identities = 21/81 (25%), Positives = 43/81 (53%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L++ +I + E+ + F +G ++ V +A + +TG+SK + ++ F++PE A E+ Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIEL 362 Query: 383 NNYLLFEHTLQIAPVPLEKVH 445 + + L I P +K H Sbjct: 363 DKQIFQGRLLHILPADAKKTH 383
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 44.3 bits (103), Expect = 3e-04 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = +2 Query: 200 VLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADE 379 +L++ I ED++Q F +G +K + + +R+TG SK Y +E+E + A + Sbjct: 74 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 133 Query: 380 MNNYLLFEHTLQI 418 +N + T+Q+ Sbjct: 134 LNGAEIMGQTIQV 146
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 44.3 bits (103), Expect = 3e-04 Identities = 21/76 (27%), Positives = 40/76 (52%) Frame = +2 Query: 164 EKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF 343 E++ +EP A L++G++P+ + + F+Q G V+ + NR T +S+ +GF+ Sbjct: 126 EEEFQEPPEDAK-LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTM 184 Query: 344 ENPEVAKIVADEMNNY 391 E A+ + N Y Sbjct: 185 STVEEAEKAVEMYNRY 200 Score = 41.2 bits (95), Expect = 0.002 Identities = 15/45 (33%), Positives = 30/45 (66%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFI 337 +Y+G+IP G + +++ F + G V R+ +R+TG+S+ +GF+ Sbjct: 232 IYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFV 276
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 44.3 bits (103), Expect = 3e-04 Identities = 18/79 (22%), Positives = 45/79 (56%) Frame = +2 Query: 185 ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK 364 E++ T L ++P +++++ F G ++ ++ R++ TG+S YGF+ + +P+ A+ Sbjct: 35 EDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 365 IVADEMNNYLLFEHTLQIA 421 + +N L T++++ Sbjct: 95 KAINTLNGLRLQTKTIKVS 113 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/77 (27%), Positives = 38/77 (49%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIV 370 T +++ ++ E + F FGAV V++ R+ T K K +GF+ N + A + Sbjct: 274 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333 Query: 371 ADEMNNYLLFEHTLQIA 421 +N Y L + LQ++ Sbjct: 334 IASLNGYRLGDRVLQVS 350 Score = 34.3 bits (77), Expect = 0.28 Identities = 15/48 (31%), Positives = 27/48 (56%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFE 346 LY+ +P + +++ F Q+G + RI ++ TG S+ GFI F+ Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/80 (30%), Positives = 44/80 (55%) Frame = +2 Query: 146 KEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKH 325 K ++ RE +L T +YI + +++++ +F Q+GA V++ + GKS+ Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRG 232 Query: 326 YGFIEFENPEVAKIVADEMN 385 +GF+ FE E A+ D+MN Sbjct: 233 FGFVSFERHEDAQKAVDDMN 252 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/73 (27%), Positives = 40/73 (54%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 LY+ ++ G +++++ F FG++ ++ + G+SK +GF+ F +PE A EM Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 NNYLLFEHTLQIA 421 N ++ L +A Sbjct: 354 NGRIVATKPLYVA 366 Score = 34.7 bits (78), Expect = 0.21 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATV--LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKT 310 ++GK RI Q + + V ++I ++ + F FG + ++ + Sbjct: 77 IKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136 Query: 311 GKSKHYGFIEFENPEVAKIVADEMNNYLL 397 SK YGF+ FE E A+ D+MN LL Sbjct: 137 --SKGYGFVHFETQEAAERAIDKMNGMLL 163
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 43.9 bits (102), Expect = 4e-04 Identities = 20/61 (32%), Positives = 33/61 (54%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L++G + E ++ F FG + V + ++R+T +S+ +GFI F NPE A M Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67 Query: 383 N 385 N Sbjct: 68 N 68
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 3/94 (3%) Frame = +2 Query: 146 KEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNR-KTGK-- 316 +E+ E++ EE L+I ++ E+ ++G F + GA+K I++ + K G Sbjct: 705 EEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLL 764 Query: 317 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 418 S +GF+E++ PE A+ ++ + + H L++ Sbjct: 765 SMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 798 Score = 32.3 bits (72), Expect = 1.1 Identities = 16/54 (29%), Positives = 31/54 (57%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK 364 L + ++P+G E++ + F FG + + + K GK + +GFI F++ E A+ Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSL-KFTKDGKFRKFGFIGFKSEEEAQ 56
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 43.9 bits (102), Expect = 4e-04 Identities = 20/72 (27%), Positives = 38/72 (52%) Frame = +2 Query: 176 EEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE 355 E PE L++G++P+ +++ G F G V+ + NR+T +S+ +GF+ E Sbjct: 50 EPPEEAK--LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVE 107 Query: 356 VAKIVADEMNNY 391 A+ + +N Y Sbjct: 108 EAEKAVELLNGY 119 Score = 37.0 bits (84), Expect = 0.043 Identities = 13/45 (28%), Positives = 28/45 (62%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFI 337 +Y+G++P +++ F + G V R+ +R+TG+S+ +GF+ Sbjct: 151 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFV 195
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 43.9 bits (102), Expect = 4e-04 Identities = 19/66 (28%), Positives = 38/66 (57%) Frame = +2 Query: 167 KQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFE 346 K ++ T TV ++G + + + F+++G + R+ + ++G+SK YG+++FE Sbjct: 254 KPSQDSNETCTV-FVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFE 312 Query: 347 NPEVAK 364 PE AK Sbjct: 313 TPEAAK 318
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 43.9 bits (102), Expect = 4e-04 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE 355 L++G++PH E++++ FF FG V +RI GK ++GF+ F++ E Sbjct: 333 LFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSE 383
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 43.9 bits (102), Expect = 4e-04 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE 355 L++G++PH E++++ FF FG V +RI GK ++GF+ F++ E Sbjct: 333 LFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSE 383
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 43.9 bits (102), Expect = 4e-04 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Frame = +2 Query: 149 EQRIREKQLE-EPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKH 325 + R+RE++L + + T +L + ++P + Q + + FG+++R + + +TG+SK Sbjct: 115 QSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKG 174 Query: 326 YGFIEFENPEVAKIVADEMNNYLLFEHTLQI 418 YGF E+ + A ++ L TL + Sbjct: 175 YGFAEYMKKDSAARAKSDLLGKPLGPRTLYV 205
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 43.9 bits (102), Expect = 4e-04 Identities = 21/71 (29%), Positives = 40/71 (56%) Frame = +2 Query: 206 YIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMN 385 ++G + + +++ F QFG V +I +R+TG+S+ +GF+ F++ + K DEMN Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68 Query: 386 NYLLFEHTLQI 418 L T+ + Sbjct: 69 GKELDGRTITV 79
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 43.5 bits (101), Expect = 5e-04 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 L E + +++G I E ++ F ++G+VK V+I NR TG SK YGF+ F N Sbjct: 362 LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVND 420 Query: 353 -EVAKIVADEMN 385 +V KIV +++ Sbjct: 421 VDVQKIVGSQIH 432 Score = 43.5 bits (101), Expect = 5e-04 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 L E + +++G I E ++ F ++G+VK V+I NR TG SK YGF+ F N Sbjct: 197 LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVND 255 Query: 353 -EVAKIVADEMN 385 +V KIV +++ Sbjct: 256 VDVQKIVGSQIH 267 Score = 43.5 bits (101), Expect = 5e-04 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 L E + +++G I E ++ F ++G+VK V+I NR TG SK YGF+ F N Sbjct: 32 LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVND 90 Query: 353 -EVAKIVADEMN 385 +V KIV +++ Sbjct: 91 VDVQKIVGSQIH 102
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 43.5 bits (101), Expect = 5e-04 Identities = 21/72 (29%), Positives = 42/72 (58%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G++P+ E ++ F G++ VRI R++ TG K +G++ FEN + + A ++ Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHL-ALKL 347 Query: 383 NNYLLFEHTLQI 418 NN L L++ Sbjct: 348 NNSELMGRKLRV 359 Score = 29.3 bits (64), Expect = 9.0 Identities = 11/48 (22%), Positives = 29/48 (60%) Frame = +2 Query: 146 KEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVR 289 + ++I+ Q EE +++G++P + +++ FF+++G ++ VR Sbjct: 168 QRKKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVR 215
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 43.5 bits (101), Expect = 5e-04 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 L E + +++G I E ++ F ++G+VK V+I NR TG SK YGF+ F N Sbjct: 32 LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVND 90 Query: 353 -EVAKIVADEMN 385 +V KIV +++ Sbjct: 91 VDVQKIVGSQIH 102
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 43.5 bits (101), Expect = 5e-04 Identities = 23/86 (26%), Positives = 45/86 (52%) Frame = +2 Query: 197 TVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVAD 376 T LY+ ++P +D+++ F ++G + + I R++ TG+ + F+ F E A+ Sbjct: 188 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAIS 247 Query: 377 EMNNYLLFEHTLQIAPVPLEKVHAKL 454 +NN ++ E Q V L + H K+ Sbjct: 248 ALNN-VIPEGASQPLTVRLAEEHGKM 272 Score = 34.3 bits (77), Expect = 0.28 Identities = 17/75 (22%), Positives = 36/75 (48%) Frame = +2 Query: 197 TVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVAD 376 T L + ++P + ++ F+ G + RI ++ KTG S Y F++F + A+ Sbjct: 102 TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIK 161 Query: 377 EMNNYLLFEHTLQIA 421 +N + L+++ Sbjct: 162 TVNGITVRNKRLKVS 176
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 43.5 bits (101), Expect = 5e-04 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 L E + +++G I E ++ F ++G+VK V+I NR TG SK YGF+ F N Sbjct: 197 LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVND 255 Query: 353 -EVAKIVADEMN 385 +V KIV +++ Sbjct: 256 VDVQKIVGSQIH 267 Score = 43.5 bits (101), Expect = 5e-04 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 L E + +++G I E ++ F ++G+VK V+I NR TG SK YGF+ F N Sbjct: 32 LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVND 90 Query: 353 -EVAKIVADEMN 385 +V KIV +++ Sbjct: 91 VDVQKIVGSQIH 102
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 43.5 bits (101), Expect = 5e-04 Identities = 24/80 (30%), Positives = 43/80 (53%) Frame = +2 Query: 146 KEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKH 325 K ++ RE +L +YI + +++++ F +FG V++ + ++GKSK Sbjct: 174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232 Query: 326 YGFIEFENPEVAKIVADEMN 385 +GF+ FE E A+ DEMN Sbjct: 233 FGFVSFERHEDAQKAVDEMN 252 Score = 40.8 bits (94), Expect = 0.003 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 LY+ ++ G +++++ F FG + ++ + G+SK +GF+ F +PE A EM Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 NNYLLFEHTLQIA 421 N ++ L +A Sbjct: 354 NGRIVATKPLYVA 366 Score = 35.0 bits (79), Expect = 0.16 Identities = 18/68 (26%), Positives = 31/68 (45%) Frame = +2 Query: 182 PENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVA 361 P LY+G + E + F G + +RI R+ T S +Y ++ F++ + A Sbjct: 6 PSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDA 65 Query: 362 KIVADEMN 385 + D MN Sbjct: 66 EHALDTMN 73
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 43.5 bits (101), Expect = 5e-04 Identities = 22/66 (33%), Positives = 36/66 (54%) Frame = +2 Query: 200 VLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADE 379 V+Y+G IP+ E+Q+ G V +++ + +TG+SK Y FIEF + E + Sbjct: 19 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 78 Query: 380 MNNYLL 397 +N Y L Sbjct: 79 LNGYQL 84
>ABT1_PONPY (Q5R9Y3) Activator of basal transcription 1| Length = 272 Score = 43.5 bits (101), Expect = 5e-04 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 28/113 (24%) Frame = +2 Query: 134 PLEGKEQRI-REKQLEEPENTAT---------VLYIGHIPHGFYEDQMQGFFQQFGAVKR 283 PL+G EQ + E++ EE E+ A ++Y+GHIP F ++ +G V R Sbjct: 15 PLKGTEQTLDAEEEQEESEDAACGSKKRVVPGIVYLGHIPPRFRPLHVRNLLSAYGEVGR 74 Query: 284 V------RIARNRKT------GKSKHY------GFIEFENPEVAKIVADEMNN 388 V R R +K GK + Y G++EF + +AK VA ++N Sbjct: 75 VFFQAEDRFVRRKKKAAAAAGGKKRSYSKDYTEGWVEFRDKRIAKRVAASLHN 127
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 43.5 bits (101), Expect = 5e-04 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 L E + +++G I E ++ F ++G+VK V+I NR TG SK YGF+ F N Sbjct: 32 LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVND 90 Query: 353 -EVAKIVADEMN 385 +V KIV +++ Sbjct: 91 VDVQKIVGSQIH 102
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 43.1 bits (100), Expect = 6e-04 Identities = 22/83 (26%), Positives = 49/83 (59%), Gaps = 3/83 (3%) Frame = +2 Query: 149 EQRIREKQLEEPENTATV--LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSK 322 ++ + ++++ P ATV L++G + E+ ++ +F+ FG + V I ++ TGK + Sbjct: 97 KRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKR 156 Query: 323 HYGFIEFENPE-VAKIVADEMNN 388 + FIEF++ + V KI+ + ++ Sbjct: 157 GFAFIEFDDYDPVDKIILQKTHS 179
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 43.1 bits (100), Expect = 6e-04 Identities = 18/71 (25%), Positives = 46/71 (64%) Frame = +2 Query: 179 EPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEV 358 E +++AT L + ++ E++++ F++FG ++RV +A++++TG++K + F+ + + + Sbjct: 197 ERDDSAT-LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDC 255 Query: 359 AKIVADEMNNY 391 A D ++ Y Sbjct: 256 AIKARDRLDGY 266
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 43.1 bits (100), Expect = 6e-04 Identities = 24/80 (30%), Positives = 42/80 (52%) Frame = +2 Query: 146 KEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKH 325 K ++ RE +L T +YI + +++++ F ++G V++ + GKSK Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKG 232 Query: 326 YGFIEFENPEVAKIVADEMN 385 +GF+ FE E A+ DEMN Sbjct: 233 FGFVSFERHEDAQKAVDEMN 252 Score = 39.7 bits (91), Expect = 0.007 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 LY+ ++ G +++++ F FG + ++ + G+SK +GF+ F +PE A EM Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 NNYLLFEHTLQIA 421 N ++ L +A Sbjct: 354 NGRIVATKPLYVA 366 Score = 33.5 bits (75), Expect = 0.48 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATV--LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKT 310 ++G+ RI Q + + V ++I ++ + F FG + ++ + Sbjct: 77 IKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136 Query: 311 GKSKHYGFIEFENPEVAKIVADEMNNYLL 397 SK YGF+ FE E A+ D+MN LL Sbjct: 137 --SKGYGFVHFETQEAAERAIDKMNGMLL 163
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 43.1 bits (100), Expect = 6e-04 Identities = 17/69 (24%), Positives = 39/69 (56%) Frame = +2 Query: 179 EPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEV 358 + + T T +++G +P+ + ++ +F+ FG ++ + +R+TGKS+ YGF+ + Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64 Query: 359 AKIVADEMN 385 A+ + N Sbjct: 65 AERACKDPN 73
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 43.1 bits (100), Expect = 6e-04 Identities = 21/72 (29%), Positives = 41/72 (56%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G++P+ E ++ F G++ VRI RN TG + +G++ FEN + + A ++ Sbjct: 287 VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHL-ALKL 345 Query: 383 NNYLLFEHTLQI 418 NN L L++ Sbjct: 346 NNSELMGRKLRV 357
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 43.1 bits (100), Expect = 6e-04 Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 2/89 (2%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L++G++P + G F++ G V+ V + ++ TG+S+ +GF+ E + + Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148 Query: 383 NNYLLFEHTLQI--APVPLEKVHAKLWKG 463 N Y + +++ P P ++ ++ G Sbjct: 149 NGYEIDGRAIRVNAGPAPAKRENSSFGGG 177 Score = 34.7 bits (78), Expect = 0.21 Identities = 14/73 (19%), Positives = 39/73 (53%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +Y+G++ G + ++ F + G V ++ +R +G+S+ +GF+ + + + D + Sbjct: 209 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSL 268 Query: 383 NNYLLFEHTLQIA 421 N L +++++ Sbjct: 269 NGVDLDGRSIRVS 281
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 43.1 bits (100), Expect = 6e-04 Identities = 21/82 (25%), Positives = 47/82 (57%), Gaps = 3/82 (3%) Frame = +2 Query: 149 EQRIREKQLEEPENTATV--LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSK 322 ++ + + ++ P ATV L++G + E ++ +FQ FG + + I +++TGK + Sbjct: 104 KRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKR 163 Query: 323 HYGFIEFENPE-VAKIVADEMN 385 + F+EF++ + V K+V + + Sbjct: 164 GFAFVEFDDYDPVDKVVLQKQH 185
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 43.1 bits (100), Expect = 6e-04 Identities = 21/83 (25%), Positives = 45/83 (54%) Frame = +2 Query: 170 QLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFEN 349 +++ PEN VL++ + ++ ++ F +FG + + R+++TG S Y FIEFE+ Sbjct: 242 EVKPPEN---VLFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFES 298 Query: 350 PEVAKIVADEMNNYLLFEHTLQI 418 + + +M L+ +H + + Sbjct: 299 QKDCEQAYFKMQGVLIDDHRIHV 321
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 43.1 bits (100), Expect = 6e-04 Identities = 20/61 (32%), Positives = 36/61 (59%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L+IG + E ++ F ++G + V + ++R+T KS+ + F+ FE+P AK A +M Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69 Query: 383 N 385 N Sbjct: 70 N 70
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 42.7 bits (99), Expect = 8e-04 Identities = 22/93 (23%), Positives = 49/93 (52%) Frame = +2 Query: 140 EGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKS 319 +G++ + + + E ++T L++ +IP F + ++ F QFG + V I N + S Sbjct: 102 DGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GS 159 Query: 320 KHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 418 K +GF+ FEN A ++++ ++ +++ Sbjct: 160 KGFGFVTFENSADADRAREKLHGTVVEGRKIEV 192
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 42.7 bits (99), Expect = 8e-04 Identities = 21/83 (25%), Positives = 46/83 (55%) Frame = +2 Query: 170 QLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFEN 349 +++ PEN VL++ + ++ ++ F +FG + + R++KTG S Y FIEFE+ Sbjct: 247 EVKPPEN---VLFVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFED 303 Query: 350 PEVAKIVADEMNNYLLFEHTLQI 418 + + +M++ L+ + + + Sbjct: 304 KKSCEEAYSKMDSVLIDDRRIHV 326
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 42.7 bits (99), Expect = 8e-04 Identities = 20/72 (27%), Positives = 41/72 (56%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G++P+ + ++ F G++ VRI RN TG + +G++ FEN + + A ++ Sbjct: 293 VFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHL-ALKL 351 Query: 383 NNYLLFEHTLQI 418 NN L L++ Sbjct: 352 NNSELMGRKLRV 363
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE-VAKIVADE 379 L+IG++PH + +++ FFQ FG V +RI GK ++GF+ F++ E V K+++ Sbjct: 340 LFIGNLPHEVDKSELKDFFQNFGNVVELRI---NSGGKLPNFGFVVFDDSEPVQKVLS-- 394 Query: 380 MNNYLLFEHTLQIAPVPLEKVHAKLWKGVRKG 475 N ++F +++ V K + R+G Sbjct: 395 -NRPIMFRGAVRL------NVEEKKTRAAREG 419
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 8/101 (7%) Frame = +2 Query: 176 EEPENTATV--------LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYG 331 EEP T+ L++ ++ + E+ + F Q+G ++ V + N KTG+ K + Sbjct: 286 EEPSEDPTIVSIRKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFA 345 Query: 332 FIEFENPEVAKIVADEMNNYLLFEHTLQIAPVPLEKVHAKL 454 ++FE+PE A + + + L I P +K + +L Sbjct: 346 HVQFEDPENAIAAYEAQDGKIFQGRLLHILPGKPKKDYNRL 386 Score = 32.0 bits (71), Expect = 1.4 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +2 Query: 275 VKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 418 VK ++N+ S +GF+EF + E A+I M+ ++L H LQ+ Sbjct: 636 VKMKPDSKNKGKFLSMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQL 683
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Frame = +2 Query: 149 EQRIREKQLE-EPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKH 325 + R+RE++L + + T +L + ++P + Q + + FG+++R + + +TG SK Sbjct: 115 QSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKG 174 Query: 326 YGFIEFENPEVAKIVADEMNNYLLFEHTLQI 418 YGF E+ + A ++ L TL + Sbjct: 175 YGFAEYMKKDSAARAKSDLLGKPLGPRTLYV 205
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Frame = +2 Query: 149 EQRIREKQLE-EPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKH 325 + R+RE++L + + T +L + ++P + Q + + FG+++R + + +TG SK Sbjct: 115 QSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKG 174 Query: 326 YGFIEFENPEVAKIVADEMNNYLLFEHTLQI 418 YGF E+ + A ++ L TL + Sbjct: 175 YGFAEYMKKDSAARAKSDLLGKPLGPRTLYV 205
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 2/88 (2%) Frame = +2 Query: 149 EQRIREKQLEEPENTATV--LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSK 322 ++ + ++ PE ATV L++G I E+ ++ +F+Q+G V I +++T K + Sbjct: 90 KRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKR 149 Query: 323 HYGFIEFENPEVAKIVADEMNNYLLFEH 406 + F+EF++ + + N+ + +H Sbjct: 150 GFAFVEFDDYDPVDKICLSRNHQIRGKH 177 Score = 37.4 bits (85), Expect = 0.033 Identities = 22/75 (29%), Positives = 41/75 (54%) Frame = +2 Query: 161 REKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIE 340 RE EPE+ L+IG + + ++ ++ F+Q+G + V + ++ KT +S+ +GFI Sbjct: 6 RENDHGEPEHVRK-LFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFIT 64 Query: 341 FENPEVAKIVADEMN 385 + A +V D N Sbjct: 65 YSR---AHMVDDAQN 76
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/61 (32%), Positives = 36/61 (59%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L+IG + ED ++ F ++G + V + ++R+T +S+ +GF+ FEN + AK M Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66 Query: 383 N 385 N Sbjct: 67 N 67
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/85 (27%), Positives = 44/85 (51%) Frame = +2 Query: 197 TVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVAD 376 T LY+ ++P +DQ+ F ++G++ + I R++ TG+ + F+ + E A+ Sbjct: 213 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 272 Query: 377 EMNNYLLFEHTLQIAPVPLEKVHAK 451 +NN ++ E Q V L + H K Sbjct: 273 ALNN-VIPEGGSQPLSVRLAQEHGK 296 Score = 36.6 bits (83), Expect = 0.056 Identities = 15/57 (26%), Positives = 30/57 (52%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF 343 + + ++ T L + ++P + ++ F+ G + RI R+ KTG S Y F++F Sbjct: 119 MHDQRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDF 175
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/85 (27%), Positives = 44/85 (51%) Frame = +2 Query: 197 TVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVAD 376 T LY+ ++P +DQ+ F ++G++ + I R++ TG+ + F+ + E A+ Sbjct: 211 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 270 Query: 377 EMNNYLLFEHTLQIAPVPLEKVHAK 451 +NN ++ E Q V L + H K Sbjct: 271 ALNN-VIPEGGSQPLSVRLAEEHGK 294 Score = 38.5 bits (88), Expect = 0.015 Identities = 16/57 (28%), Positives = 30/57 (52%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF 343 + +P + T L + ++P + ++ F+ G + RI R+ KTG S Y F++F Sbjct: 117 MNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDF 173
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G++P + F++ G V+ V + ++ TG+S+ +GF+ + E + + Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148 Query: 383 NNYLLFEHTLQI--APVPLEKVHAKLWKGVRKG 475 N Y L L++ P P ++ ++ G R G Sbjct: 149 NGYELDGRALRVNSGPPPEKRENSSFRGGSRGG 181 Score = 39.7 bits (91), Expect = 0.007 Identities = 15/74 (20%), Positives = 40/74 (54%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +Y+G++ G +D ++ F + G V ++ +R +G+S+ +GF+ + + E + + Sbjct: 190 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 249 Query: 383 NNYLLFEHTLQIAP 424 + L ++++P Sbjct: 250 DGVDLNGRAIRVSP 263
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/69 (30%), Positives = 39/69 (56%) Frame = +2 Query: 146 KEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKH 325 K+Q++ ++ +E L+I ++P D++ FF+ FG VK+V I +++T SK Sbjct: 302 KDQKLVDQIMESGR-----LFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKG 356 Query: 326 YGFIEFENP 352 F+ F +P Sbjct: 357 LAFVSFSDP 365
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/79 (26%), Positives = 42/79 (53%) Frame = +2 Query: 182 PENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVA 361 PEN +L++ + ++ ++ F +FG + + R++K+G S Y FIEF+ E A Sbjct: 244 PEN---ILFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAA 300 Query: 362 KIVADEMNNYLLFEHTLQI 418 + +M N L+ + + + Sbjct: 301 EQAYFKMQNVLVDDRRIWV 319
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 42.0 bits (97), Expect = 0.001 Identities = 19/78 (24%), Positives = 39/78 (50%) Frame = +2 Query: 188 NTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKI 367 N+ T L + ++P + ++ F+ G + RI R+ KTG S YGF++F + A Sbjct: 75 NSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALR 134 Query: 368 VADEMNNYLLFEHTLQIA 421 + +N + ++++ Sbjct: 135 AINNLNGITVRNKRIKVS 152
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/61 (29%), Positives = 35/61 (57%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L++G + E ++ F ++G + V + ++R+T +S+ +GF+ FEN + AK M Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 383 N 385 N Sbjct: 68 N 68
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/61 (29%), Positives = 35/61 (57%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L++G + E ++ F ++G + V + ++R+T +S+ +GF+ FEN + AK M Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 383 N 385 N Sbjct: 68 N 68
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE-VAKI 367 T +++G I ED ++ +F+Q+G ++ + I +R +GK + + F+ FE+ + V KI Sbjct: 103 TVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKI 162 Query: 368 VADE---MNNY 391 V + +NN+ Sbjct: 163 VIQKYHTVNNH 173
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/75 (26%), Positives = 39/75 (52%) Frame = +2 Query: 167 KQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFE 346 ++ +EP A L++G++P+ + + FQQ G V+ + NR+T +S+ +GF+ Sbjct: 88 EEYQEPSEDAK-LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMS 146 Query: 347 NPEVAKIVADEMNNY 391 E A + + Y Sbjct: 147 TVEEADKAVELYSQY 161 Score = 37.0 bits (84), Expect = 0.043 Identities = 15/59 (25%), Positives = 37/59 (62%), Gaps = 1/59 (1%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFEN-PEVAKIVAD 376 +Y+G+IP + +++ F + G V R+ +R++G+S+ +GF+ + E+++ +A+ Sbjct: 193 IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 42.0 bits (97), Expect = 0.001 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 3/129 (2%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENT--ATVLYIGHIPHGFYEDQMQGFFQQFGA-VKRVRIARNRK 307 L GK R+ + NT L++G++ E + F G VK ++AR+ + Sbjct: 77 LFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARD-E 135 Query: 308 TGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAPVPLEKVHAKLWKGVRKGFVPV 487 G+SK YGF+ +++ E A + MNN L P+ + + KG R G + Sbjct: 136 NGRSKGYGFVSYDSFETADAAIEAMNNQFLMN-----KPITVSYAFKREGKGERHGDIAE 190 Query: 488 DRVAIERKR 514 ++A K+ Sbjct: 191 RKLAAAAKK 199
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L++G++P Q+ F+ G V+ V + ++ TG+S+ +GF+ + + A + Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152 Query: 383 NNYLLFEHTLQI-APVPLEKVHAKLWKGVRKGF 478 N Y L L++ A P K +G R F Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSF 185 Score = 36.6 bits (83), Expect = 0.056 Identities = 13/51 (25%), Positives = 31/51 (60%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE 355 +Y+G++ G + ++ F + G V R+ +R +G+SK +GF+ +++ + Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQ 256
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 42.0 bits (97), Expect = 0.001 Identities = 17/67 (25%), Positives = 37/67 (55%) Frame = +2 Query: 185 ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK 364 + T T +++G +P+ + ++ +F+ FG ++ + +R+TGKS+ YGF+ + A Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87 Query: 365 IVADEMN 385 + N Sbjct: 88 RACKDPN 94
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 42.0 bits (97), Expect = 0.001 Identities = 19/73 (26%), Positives = 39/73 (53%) Frame = +2 Query: 134 PLEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTG 313 P + Q E+ + + ++IG + ED ++ +F ++G V ++I ++ TG Sbjct: 138 PQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATG 197 Query: 314 KSKHYGFIEFENP 352 +S+ +GF+ FE P Sbjct: 198 RSRGFGFLSFEKP 210 Score = 33.1 bits (74), Expect = 0.62 Identities = 16/76 (21%), Positives = 40/76 (52%) Frame = +2 Query: 176 EEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE 355 +E + T + ++G I + + FF Q+G + ++ ++ TG+S+ +GF+ +++ + Sbjct: 237 DEQDKTGKI-FVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 295 Query: 356 VAKIVADEMNNYLLFE 403 V N ++ F+ Sbjct: 296 AVDRVC--QNKFIDFK 309
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/70 (25%), Positives = 36/70 (51%) Frame = +2 Query: 182 PENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVA 361 P ++IG +P +ED++ ++ G + +R+ + G ++ Y F+ F N + A Sbjct: 51 PPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEA 109 Query: 362 KIVADEMNNY 391 K ++NNY Sbjct: 110 KNAIKQLNNY 119
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/72 (31%), Positives = 38/72 (52%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L+IG + E ++ F + G + V + ++R T KS+ + FI FENP AK A +M Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68 Query: 383 NNYLLFEHTLQI 418 N L +++ Sbjct: 69 NGKSLHGKAIKV 80
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/68 (26%), Positives = 36/68 (52%) Frame = +2 Query: 188 NTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKI 367 + T +++G IP +ED++ F++ G + +R+ + TG ++ Y F+ F E A+ Sbjct: 69 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 128 Query: 368 VADEMNNY 391 NN+ Sbjct: 129 AVKLYNNH 136 Score = 33.9 bits (76), Expect = 0.36 Identities = 21/73 (28%), Positives = 37/73 (50%) Frame = +2 Query: 200 VLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADE 379 VL++ ++ + E+ ++ F QFG ++RV+ K K Y FI F+ + A +E Sbjct: 249 VLFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEE 300 Query: 380 MNNYLLFEHTLQI 418 MN L ++I Sbjct: 301 MNGKDLEGENIEI 313
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/61 (29%), Positives = 35/61 (57%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L++G + E ++ F ++G + V + ++R+T +S+ +GF+ FEN + AK M Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 383 N 385 N Sbjct: 68 N 68
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/61 (29%), Positives = 35/61 (57%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L++G + E ++ F ++G + V + ++R+T +S+ +GF+ FEN + AK M Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 383 N 385 N Sbjct: 68 N 68
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/61 (29%), Positives = 35/61 (57%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L++G + E ++ F ++G + V + ++R+T +S+ +GF+ FEN + AK M Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 383 N 385 N Sbjct: 68 N 68
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/83 (25%), Positives = 43/83 (51%) Frame = +2 Query: 170 QLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFEN 349 ++ PEN +L++ + D ++ F +FG + + +++KTG S Y FIEF+ Sbjct: 256 EIRPPEN---ILFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDK 312 Query: 350 PEVAKIVADEMNNYLLFEHTLQI 418 + A+ +M N L+ + + + Sbjct: 313 KDDAERAYFKMQNVLVDDRRIWV 335
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/77 (27%), Positives = 40/77 (51%) Frame = +2 Query: 194 ATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVA 373 +T L+IG + G + ++ F FG V ++ +R+TG+S+ +GF+ F + A Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 374 DEMNNYLLFEHTLQIAP 424 EM+ L +++ P Sbjct: 94 SEMDGKELNGRHIRVNP 110
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/68 (26%), Positives = 36/68 (52%) Frame = +2 Query: 188 NTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKI 367 + T +++G IP +ED++ F++ G + +R+ + TG ++ Y F+ F E A+ Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218 Query: 368 VADEMNNY 391 NN+ Sbjct: 219 AVKLYNNH 226 Score = 33.9 bits (76), Expect = 0.36 Identities = 21/73 (28%), Positives = 37/73 (50%) Frame = +2 Query: 200 VLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADE 379 VL++ ++ + E+ ++ F QFG ++RV+ K K Y FI F+ + A +E Sbjct: 339 VLFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEE 390 Query: 380 MNNYLLFEHTLQI 418 MN L ++I Sbjct: 391 MNGKDLEGENIEI 403
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/68 (26%), Positives = 36/68 (52%) Frame = +2 Query: 188 NTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKI 367 + T +++G IP +ED++ F++ G + +R+ + TG ++ Y F+ F E A+ Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218 Query: 368 VADEMNNY 391 NN+ Sbjct: 219 AVKLYNNH 226 Score = 33.9 bits (76), Expect = 0.36 Identities = 21/73 (28%), Positives = 37/73 (50%) Frame = +2 Query: 200 VLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADE 379 VL++ ++ + E+ ++ F QFG ++RV+ K K Y FI F+ + A +E Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDYAFIHFDERDGAVKAMEE 390 Query: 380 MNNYLLFEHTLQI 418 MN L ++I Sbjct: 391 MNGKDLEGENIEI 403
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 41.2 bits (95), Expect = 0.002 Identities = 18/70 (25%), Positives = 36/70 (51%) Frame = +2 Query: 182 PENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVA 361 P ++IG +P +ED++ ++ G + +R+ + G ++ Y F+ F N + A Sbjct: 51 PPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEA 109 Query: 362 KIVADEMNNY 391 K ++NNY Sbjct: 110 KNAIKQLNNY 119
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 41.2 bits (95), Expect = 0.002 Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE-VAKI 367 T L++G I E ++ +F+++G + + I +R++GK + +GF+ F++ + V KI Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169 Query: 368 V 370 V Sbjct: 170 V 170 Score = 30.4 bits (67), Expect = 4.0 Identities = 18/73 (24%), Positives = 39/73 (53%) Frame = +2 Query: 131 LPLEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKT 310 +PLE K+ REK+ L+IG + E+ ++ +++Q+G + + R+ + Sbjct: 8 VPLERKK---REKEQFRK------LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPAS 58 Query: 311 GKSKHYGFIEFEN 349 +S+ +GF+ F + Sbjct: 59 KRSRGFGFVTFSS 71
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/69 (28%), Positives = 33/69 (47%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIV 370 T+ LY+G + E + F G V +R+ R+ T +S Y ++ F N E + Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137 Query: 371 ADEMNNYLL 397 DE+N L+ Sbjct: 138 LDELNYTLI 146 Score = 40.0 bits (92), Expect = 0.005 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Frame = +2 Query: 140 EGKEQRIREKQLEEPENTATV-LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK 316 E +R + +LE+ V L+I ++ +++++ F FG + +I + + GK Sbjct: 344 EELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GK 402 Query: 317 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 421 SK +GF+ + PE A EMN +L L +A Sbjct: 403 SKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 437 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/79 (25%), Positives = 42/79 (53%) Frame = +2 Query: 152 QRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYG 331 +R R+ ++E + T +YI ++ E + F QFG + + + +++ K + +G Sbjct: 246 RRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFG 304 Query: 332 FIEFENPEVAKIVADEMNN 388 F+ + N E A+ DE+N+ Sbjct: 305 FVNYANHECAQKAVDELND 323
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 41.2 bits (95), Expect = 0.002 Identities = 23/95 (24%), Positives = 50/95 (52%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK 316 L+ K ++I+++++ + LY+ ++ G +D+++ F +G + ++ + G Sbjct: 276 LKRKFEQIKQERINRYQGVN--LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMT--EGGH 331 Query: 317 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 421 SK +GF+ F +PE A EMN ++ L +A Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366 Score = 37.0 bits (84), Expect = 0.043 Identities = 22/80 (27%), Positives = 39/80 (48%) Frame = +2 Query: 146 KEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKH 325 K +R RE + T +YI + + +++ F FG V++ + TG+S+ Sbjct: 174 KSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRG 232 Query: 326 YGFIEFENPEVAKIVADEMN 385 +GF+ + N E A+ EMN Sbjct: 233 FGFVNYGNHEEAQKAVSEMN 252
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 41.2 bits (95), Expect = 0.002 Identities = 23/95 (24%), Positives = 50/95 (52%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK 316 L+ K ++I+++++ + LY+ ++ G +D+++ F +G + ++ + G Sbjct: 276 LKRKFEQIKQERINRYQGVN--LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMT--EGGH 331 Query: 317 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 421 SK +GF+ F +PE A EMN ++ L +A Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366 Score = 35.4 bits (80), Expect = 0.13 Identities = 21/80 (26%), Positives = 39/80 (48%) Frame = +2 Query: 146 KEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKH 325 K +R RE + T +YI + + +++ F FG V++ + +G+S+ Sbjct: 174 KSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRG 232 Query: 326 YGFIEFENPEVAKIVADEMN 385 +GF+ + N E A+ EMN Sbjct: 233 FGFVNYGNHEEAQKAVTEMN 252
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 41.2 bits (95), Expect = 0.002 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 18/97 (18%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK------ 364 L++ +I + ED + F +G +K V +A + +TG SK + ++ F PE A Sbjct: 327 LFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIEL 386 Query: 365 ------------IVADEMNNYLLFEHTLQIAPVPLEK 439 + ADEM ++ L E L+ P+ ++ Sbjct: 387 DKQIFQGRLLHILAADEMKDHRLDEFDLKNMPLKKQR 423
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/55 (36%), Positives = 30/55 (54%) Frame = +2 Query: 257 FQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 421 F FGAV V++ R+ T K K +GF+ N E A + +N Y L + LQ++ Sbjct: 264 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318 Score = 33.9 bits (76), Expect = 0.36 Identities = 16/63 (25%), Positives = 29/63 (46%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 LYI +P + ++ F +FG + R+ ++ TG S+ FI F+ A+ Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167 Query: 383 NNY 391 N + Sbjct: 168 NGH 170
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 41.2 bits (95), Expect = 0.002 Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE-VAKI 367 T L++G I E ++ +F+++G + + I +R++GK + +GF+ F++ + V KI Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157 Query: 368 V 370 V Sbjct: 158 V 158 Score = 30.4 bits (67), Expect = 4.0 Identities = 12/59 (20%), Positives = 32/59 (54%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFEN 349 +E + L+IG + E+ ++ +++Q+G + + R+ + +S+ +GF+ F + Sbjct: 1 MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 59
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 41.2 bits (95), Expect = 0.002 Identities = 23/76 (30%), Positives = 40/76 (52%) Frame = +2 Query: 161 REKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIE 340 R+ QLEE + T LY+ +I ++Q Q F +FG + + ++ GK K +GF+ Sbjct: 206 RDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVN 264 Query: 341 FENPEVAKIVADEMNN 388 +E E A + +N+ Sbjct: 265 YEKHEDAVKAVEALND 280 Score = 41.2 bits (95), Expect = 0.002 Identities = 18/82 (21%), Positives = 39/82 (47%) Frame = +2 Query: 140 EGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKS 319 + ++Q + + EN++ LY+G + E + F G+V +R+ R+ T S Sbjct: 18 DDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTS 77 Query: 320 KHYGFIEFENPEVAKIVADEMN 385 Y ++ F + E + +++N Sbjct: 78 LGYAYVNFNDHEAGRKAIEQLN 99 Score = 39.7 bits (91), Expect = 0.007 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 2/101 (1%) Frame = +2 Query: 128 FLPLEGKEQRIREKQLEEP--ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARN 301 + P++G+ RI Q + + + ++I ++ + F FG + +IA + Sbjct: 100 YTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD 159 Query: 302 RKTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAP 424 + GKSK +GF+ FE AK D +N LL + +AP Sbjct: 160 -ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 199 Score = 36.6 bits (83), Expect = 0.056 Identities = 18/73 (24%), Positives = 37/73 (50%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L++ ++ +++++ F +G + ++ R + GKSK +GF+ F PE A E Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEK 381 Query: 383 NNYLLFEHTLQIA 421 N ++ L +A Sbjct: 382 NQQIVAGKPLYVA 394
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 41.2 bits (95), Expect = 0.002 Identities = 17/60 (28%), Positives = 36/60 (60%) Frame = +2 Query: 206 YIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMN 385 ++G + ++ +Q F QFG V +I +R++G+S+ +GF+ F++ + + +EMN Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 40.8 bits (94), Expect = 0.003 Identities = 18/89 (20%), Positives = 44/89 (49%), Gaps = 2/89 (2%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L++G++P + G F++ G V+ V + ++ +G+S+ +GF+ E + + Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149 Query: 383 NNYLLFEHTLQI--APVPLEKVHAKLWKG 463 N Y + +++ P P ++ ++ G Sbjct: 150 NGYEIDGRAIRVNAGPAPAKRENSSFGGG 178 Score = 34.7 bits (78), Expect = 0.21 Identities = 14/73 (19%), Positives = 39/73 (53%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +Y+G++ G + ++ F + G V ++ +R +G+S+ +GF+ + + + D + Sbjct: 210 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSL 269 Query: 383 NNYLLFEHTLQIA 421 N L +++++ Sbjct: 270 NGIDLDGRSIRVS 282
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/97 (24%), Positives = 48/97 (49%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L+IG + E ++ F ++G + + + ++R+T KS+ + F+ E+P AK A +M Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDM 69 Query: 383 NNYLLFEHTLQIAPVPLEKVHAKLWKGVRKGFVPVDR 493 N +L + +E+ ++ R+G P R Sbjct: 70 NG-----KSLDGKAIKVEQATKPFFESGRRGPPPPPR 101
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/79 (24%), Positives = 44/79 (55%), Gaps = 8/79 (10%) Frame = +2 Query: 137 LEGKEQRIR-EKQLEEPENTATV-------LYIGHIPHGFYEDQMQGFFQQFGAVKRVRI 292 +E ++Q + E ++ +P N L++ + + E +++ F+ +G +KR+ + Sbjct: 75 IERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHM 134 Query: 293 ARNRKTGKSKHYGFIEFEN 349 N+++GK + Y FIE+E+ Sbjct: 135 VYNKRSGKPRGYAFIEYEH 153
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 40.8 bits (94), Expect = 0.003 Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE-VAKIVAD 376 L+IG++PH + +++ FFQ +G V +RI GK ++GF+ F++ E V K++++ Sbjct: 342 LFIGNLPHEVDKSELKDFFQSYGNVVELRI---NSGGKLPNFGFVVFDDSEPVQKVLSN 397
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 40.4 bits (93), Expect = 0.004 Identities = 22/83 (26%), Positives = 44/83 (53%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L++ +IP F + ++ F++FG V V I N + SK +GF+ E P+ A+ E+ Sbjct: 155 LHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNER--GSKGFGFVTMERPQDAERARQEL 212 Query: 383 NNYLLFEHTLQIAPVPLEKVHAK 451 + ++ +++ +VH+K Sbjct: 213 HGSMIEGRKIEV-NCATARVHSK 234
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/65 (27%), Positives = 36/65 (55%) Frame = +2 Query: 197 TVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVAD 376 T +++G IP YED++ F++ G + +R+ + +G+++ Y FI F E A+ Sbjct: 165 TEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 224 Query: 377 EMNNY 391 ++Y Sbjct: 225 LCDSY 229 Score = 33.9 bits (76), Expect = 0.36 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Frame = +2 Query: 173 LEEPENTAT----VLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIE 340 +EEP+ VL++ ++ E+ ++ F +FG ++RV+ K K Y F+ Sbjct: 329 VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDYAFVH 380 Query: 341 FENPEVAKIVADEMN 385 FE+ A DEMN Sbjct: 381 FEDRGAAVKAMDEMN 395
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 40.4 bits (93), Expect = 0.004 Identities = 23/95 (24%), Positives = 50/95 (52%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK 316 L+ K ++I+++++ + LY+ ++ G +D+++ F +G + ++ + G Sbjct: 276 LKRKFEQIKQERINRYQGVN--LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMT--EGGH 331 Query: 317 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 421 SK +GF+ F +PE A EMN ++ L +A Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366 Score = 35.4 bits (80), Expect = 0.13 Identities = 21/80 (26%), Positives = 39/80 (48%) Frame = +2 Query: 146 KEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKH 325 K +R RE + T +YI + + +++ F FG V++ + +G+S+ Sbjct: 174 KSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRG 232 Query: 326 YGFIEFENPEVAKIVADEMN 385 +GF+ + N E A+ EMN Sbjct: 233 FGFVNYGNHEEAQKAVSEMN 252
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 40.4 bits (93), Expect = 0.004 Identities = 17/62 (27%), Positives = 36/62 (58%) Frame = +2 Query: 164 EKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF 343 E++ E + L++G + E+ ++ +F QFG V V++ ++ TGK + + F+EF Sbjct: 112 ERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEF 171 Query: 344 EN 349 ++ Sbjct: 172 DD 173 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/47 (31%), Positives = 28/47 (59%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF 343 L+IG + E+ ++ F+ Q+G V V + R+ T +S+ +GFI + Sbjct: 34 LFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITY 80
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/74 (27%), Positives = 40/74 (54%) Frame = +2 Query: 134 PLEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTG 313 P EG +Q K+ + + +++G IPH E +++ +F +FG V V + + + Sbjct: 97 PREGWQQ----KEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQ 152 Query: 314 KSKHYGFIEFENPE 355 + + +GFI FE+ + Sbjct: 153 RPRGFGFITFEDEQ 166 Score = 37.0 bits (84), Expect = 0.043 Identities = 13/50 (26%), Positives = 32/50 (64%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 L++G + ++ ++ +F Q+G V I +++ T +S+ +GF++F++P Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein| Length = 124 Score = 40.4 bits (93), Expect = 0.004 Identities = 25/101 (24%), Positives = 49/101 (48%) Frame = +2 Query: 158 IREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFI 337 +R+ P VLY+ ++P ++M F ++GA++++RI ++ T K F+ Sbjct: 6 LRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKAT---KGTAFV 62 Query: 338 EFENPEVAKIVADEMNNYLLFEHTLQIAPVPLEKVHAKLWK 460 +E+ AK D ++ + + L + L HAK+ K Sbjct: 63 VYEDIYDAKNAVDHLSGFNVANRYL----IVLYYQHAKMSK 99
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 40.0 bits (92), Expect = 0.005 Identities = 16/52 (30%), Positives = 32/52 (61%) Frame = +2 Query: 200 VLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE 355 +L++G++ +D ++ FQ G + ++R+A +GK K + FI+F+N E Sbjct: 240 ILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEE 291
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 40.0 bits (92), Expect = 0.005 Identities = 21/69 (30%), Positives = 38/69 (55%) Frame = +2 Query: 179 EPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEV 358 +PE T LY+ ++ ED ++ F +FG + + IA++ + Y F+ F+NPE Sbjct: 195 KPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPED 253 Query: 359 AKIVADEMN 385 A+ A+ +N Sbjct: 254 ARRAAETVN 262 Score = 38.9 bits (89), Expect = 0.011 Identities = 16/72 (22%), Positives = 39/72 (54%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++ ++P +Q F++FG + ++A + GKS+ YGF++FE + A + Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTL 172 Query: 383 NNYLLFEHTLQI 418 N+ ++ + + + Sbjct: 173 NSTIVADKEIYV 184 Score = 38.5 bits (88), Expect = 0.015 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 5/77 (6%) Frame = +2 Query: 146 KEQRIREKQLEEPENTATV-----LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKT 310 +EQ +RE+ E+ E + +Y+ ++ E++++ F Q G + ++ + K Sbjct: 282 REQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK- 340 Query: 311 GKSKHYGFIEFENPEVA 361 GKSK +GF+ F PE A Sbjct: 341 GKSKGFGFVCFSTPEEA 357 Score = 37.7 bits (86), Expect = 0.025 Identities = 18/65 (27%), Positives = 35/65 (53%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 LY+G + E + F +F ++ VR+ ++ +G+S YG+ F + + A + ++ Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85 Query: 383 NNYLL 397 NN LL Sbjct: 86 NNSLL 90
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 40.0 bits (92), Expect = 0.005 Identities = 18/74 (24%), Positives = 38/74 (51%) Frame = +2 Query: 170 QLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFEN 349 + EP A L++G++ + + F+Q G V+ + NR+T +S+ +GF+ + Sbjct: 142 EFPEPSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200 Query: 350 PEVAKIVADEMNNY 391 + A+ ++ N Y Sbjct: 201 VDEAETAVEKFNRY 214 Score = 37.4 bits (85), Expect = 0.033 Identities = 16/61 (26%), Positives = 33/61 (54%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +Y+G++P +++ F + G V R+ +R+TG+S+ +GF+ + DE+ Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD-------VDEL 298 Query: 383 N 385 N Sbjct: 299 N 299
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Frame = +2 Query: 149 EQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNR-KTGK--S 319 E+ E++ EE L+I ++ E++++ F + G VK I++ + K G S Sbjct: 714 EEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLS 773 Query: 320 KHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 418 +GF+E+ PE A+ ++ +++ H L++ Sbjct: 774 MGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEV 806 Score = 32.7 bits (73), Expect = 0.81 Identities = 17/61 (27%), Positives = 32/61 (52%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L + ++P+G E++ + F FG + + + K GK + +GFI F++ E A+ Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSL-KFTKDGKFRKFGFIGFKSEEEAQKAQKHF 62 Query: 383 N 385 N Sbjct: 63 N 63
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/55 (34%), Positives = 30/55 (54%) Frame = +2 Query: 257 FQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 421 F FGAV V++ R+ T K K +GF+ N E + + +N Y L + LQ++ Sbjct: 264 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASLNGYRLGDKILQVS 318 Score = 32.7 bits (73), Expect = 0.81 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK 364 LYI +P + ++ F +FG + R+ ++ TG S+ FI F+ A+ Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAE 161
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/74 (25%), Positives = 37/74 (50%) Frame = +2 Query: 140 EGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKS 319 +G +R Q + + + ++ E +Q F+ FG++ R+ +A+++ TG+S Sbjct: 220 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 279 Query: 320 KHYGFIEFENPEVA 361 K + FI F E A Sbjct: 280 KGFAFISFHRREDA 293
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/74 (25%), Positives = 37/74 (50%) Frame = +2 Query: 140 EGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKS 319 +G +R Q + + + ++ E +Q F+ FG++ R+ +A+++ TG+S Sbjct: 220 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 279 Query: 320 KHYGFIEFENPEVA 361 K + FI F E A Sbjct: 280 KGFAFISFHRREDA 293
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 39.7 bits (91), Expect = 0.007 Identities = 15/74 (20%), Positives = 40/74 (54%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +Y+G++ G +D ++ F + G V ++ +R +G+S+ +GF+ + + E + + Sbjct: 196 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 255 Query: 383 NNYLLFEHTLQIAP 424 + L ++++P Sbjct: 256 DGVDLNGRAIRVSP 269 Score = 36.2 bits (82), Expect = 0.073 Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 2/91 (2%) Frame = +2 Query: 164 EKQLEEPENTATVL--YIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFI 337 ++ +EE N + L ++G++ + F++ G V+ V + ++ TG+S+ +GF+ Sbjct: 74 DEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFV 133 Query: 338 EFENPEVAKIVADEMNNYLLFEHTLQIAPVP 430 + E + + N Y L L++ P Sbjct: 134 TMSSKEEVEAACQQFNGYELDGRALRVNSGP 164
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 39.7 bits (91), Expect = 0.007 Identities = 23/86 (26%), Positives = 45/86 (52%) Frame = +2 Query: 131 LPLEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKT 310 + +EG+ R+ + + L++ + E+ ++ F+ G+V R RI +R+T Sbjct: 546 MEIEGRTIRLELQGSNSRSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRET 602 Query: 311 GKSKHYGFIEFENPEVAKIVADEMNN 388 G SK +GF++F + E AK + M + Sbjct: 603 GSSKGFGFVDFNSEEDAKAAKEAMED 628
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 39.7 bits (91), Expect = 0.007 Identities = 18/79 (22%), Positives = 44/79 (55%), Gaps = 8/79 (10%) Frame = +2 Query: 137 LEGKEQRIR-EKQLEEPENTATV-------LYIGHIPHGFYEDQMQGFFQQFGAVKRVRI 292 +E ++Q + E ++ +P N L++ + + E +++ F+ +G +KR+ + Sbjct: 75 IERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHM 134 Query: 293 ARNRKTGKSKHYGFIEFEN 349 ++++GK + Y FIE+E+ Sbjct: 135 VYSKRSGKPRGYAFIEYEH 153
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 39.7 bits (91), Expect = 0.007 Identities = 18/79 (22%), Positives = 44/79 (55%), Gaps = 8/79 (10%) Frame = +2 Query: 137 LEGKEQRIR-EKQLEEPENTATV-------LYIGHIPHGFYEDQMQGFFQQFGAVKRVRI 292 +E ++Q + E ++ +P N L++ + + E +++ F+ +G +KR+ + Sbjct: 75 IERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHM 134 Query: 293 ARNRKTGKSKHYGFIEFEN 349 ++++GK + Y FIE+E+ Sbjct: 135 VYSKRSGKPRGYAFIEYEH 153
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 39.7 bits (91), Expect = 0.007 Identities = 16/53 (30%), Positives = 31/53 (58%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVA 361 L++G + E + F QFG V++ I ++++GK + +GF+ F+N + A Sbjct: 100 LFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAA 152 Score = 33.1 bits (74), Expect = 0.62 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVA 361 L+IG + E ++G F+ FG + + N +T +S+ +GF+ + N E A Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 39.7 bits (91), Expect = 0.007 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +2 Query: 161 REKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK-SKHYGFI 337 +E++ P T ++IG + +D + F +G +K + + R SK Y ++ Sbjct: 149 KERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYV 208 Query: 338 EFENPEVAKIVADEMN 385 EFENP+ A+ M+ Sbjct: 209 EFENPDEAEKALKHMD 224
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 39.7 bits (91), Expect = 0.007 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +2 Query: 161 REKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK-SKHYGFI 337 +E++ P T ++IG + +D + F +G +K + + R SK Y ++ Sbjct: 149 KERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYV 208 Query: 338 EFENPEVAKIVADEMN 385 EFENP+ A+ M+ Sbjct: 209 EFENPDEAEKALKHMD 224
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 39.7 bits (91), Expect = 0.007 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +2 Query: 161 REKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK-SKHYGFI 337 +E++ P T ++IG + +D + F +G +K + + R SK Y ++ Sbjct: 149 KERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYV 208 Query: 338 EFENPEVAKIVADEMN 385 EFENP+ A+ M+ Sbjct: 209 EFENPDEAEKALKHMD 224
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 39.7 bits (91), Expect = 0.007 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +2 Query: 161 REKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK-SKHYGFI 337 +E++ P T ++IG + +D + F +G +K + + R SK Y ++ Sbjct: 149 KERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYV 208 Query: 338 EFENPEVAKIVADEMN 385 EFENP+ A+ M+ Sbjct: 209 EFENPDEAEKALKHMD 224
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 39.7 bits (91), Expect = 0.007 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +2 Query: 161 REKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK-SKHYGFI 337 +E++ P T ++IG + +D + F +G +K + + R SK Y ++ Sbjct: 149 KERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYV 208 Query: 338 EFENPEVAKIVADEMN 385 EFENP+ A+ M+ Sbjct: 209 EFENPDEAEKALKHMD 224
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 39.7 bits (91), Expect = 0.007 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = +2 Query: 257 FQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 421 F FGAV+ V+I ++ T + K YGF+ N + A + +N Y + LQ++ Sbjct: 422 FGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVS 476 Score = 32.7 bits (73), Expect = 0.81 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNR-KTGKSKHYGFIEFENPEVA 361 LY+ +P + +++ F FGA+ RI +N ++K GFI F+ E A Sbjct: 250 LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEA 303
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 39.7 bits (91), Expect = 0.007 Identities = 18/70 (25%), Positives = 35/70 (50%) Frame = +2 Query: 182 PENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVA 361 P ++IG +P +ED++ ++ G + +R+ + G ++ Y F+ F N A Sbjct: 51 PPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEA 109 Query: 362 KIVADEMNNY 391 K ++NNY Sbjct: 110 KNAIKQLNNY 119
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 39.7 bits (91), Expect = 0.007 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = +2 Query: 257 FQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIA 421 F FGAV+ V+I ++ T + K YGF+ N + A + +N Y + LQ++ Sbjct: 458 FGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVS 512 Score = 32.7 bits (73), Expect = 0.81 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNR-KTGKSKHYGFIEFENPEVA 361 LY+ +P + +++ F FGA+ RI +N ++K GFI F+ E A Sbjct: 286 LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEA 339
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 39.7 bits (91), Expect = 0.007 Identities = 17/63 (26%), Positives = 34/63 (53%) Frame = +2 Query: 155 RIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGF 334 R R +L E E +++ + + ++ FF+Q G V+ +I R++ +G+SK + Sbjct: 226 RERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAY 285 Query: 335 IEF 343 +EF Sbjct: 286 VEF 288 Score = 37.7 bits (86), Expect = 0.025 Identities = 17/72 (23%), Positives = 41/72 (56%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L + +I ++ ++ F+ FG ++ V + R+ + +SK +G+I++ NP A+ ++M Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPISARNALEKM 400 Query: 383 NNYLLFEHTLQI 418 N + L +++ Sbjct: 401 NGFDLAGRNMRV 412
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 39.3 bits (90), Expect = 0.009 Identities = 21/77 (27%), Positives = 38/77 (49%) Frame = +2 Query: 188 NTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKI 367 ++A L+IG +P+ +DQ++ FG +K + ++ TG SK Y F E+ + V Sbjct: 256 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 315 Query: 368 VADEMNNYLLFEHTLQI 418 +N L + L + Sbjct: 316 AIAGLNGMQLGDKKLLV 332
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 39.3 bits (90), Expect = 0.009 Identities = 21/77 (27%), Positives = 38/77 (49%) Frame = +2 Query: 188 NTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKI 367 ++A L+IG +P+ +DQ++ FG +K + ++ TG SK Y F E+ + V Sbjct: 256 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 315 Query: 368 VADEMNNYLLFEHTLQI 418 +N L + L + Sbjct: 316 AIAGLNGMQLGDKKLLV 332
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 39.3 bits (90), Expect = 0.009 Identities = 20/78 (25%), Positives = 40/78 (51%) Frame = +2 Query: 185 ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK 364 E + VLY+G++ ED ++ +FQ G + ++I + K K+ +Y F+E+ A Sbjct: 70 ETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDAN 128 Query: 365 IVADEMNNYLLFEHTLQI 418 I +N + + ++I Sbjct: 129 IALQTLNGKQIENNIVKI 146 Score = 32.3 bits (72), Expect = 1.1 Identities = 17/72 (23%), Positives = 35/72 (48%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L++G + ++ ++ F+ F + + + +TG S+ YGF+ F + + A+ D M Sbjct: 163 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 222 Query: 383 NNYLLFEHTLQI 418 L L+I Sbjct: 223 QGQDLNGRPLRI 234
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 39.3 bits (90), Expect = 0.009 Identities = 18/55 (32%), Positives = 31/55 (56%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKI 367 +YI ++P EDQ+ + FG + ++ +N G SK + F EF+NP A++ Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 39.3 bits (90), Expect = 0.009 Identities = 17/69 (24%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVAD-- 376 +++G + + ++ +F+QFG V+ + ++ T + + +GF+ FEN +V + V + Sbjct: 112 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIH 171 Query: 377 --EMNNYLL 397 E+NN ++ Sbjct: 172 FHEINNKMV 180 Score = 35.8 bits (81), Expect = 0.096 Identities = 13/50 (26%), Positives = 29/50 (58%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 ++IG + D ++ +F +FG ++ + R+ T +S+ +GF+ F +P Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADP 72
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 39.3 bits (90), Expect = 0.009 Identities = 17/69 (24%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVAD-- 376 +++G + + ++ +F+QFG V+ + ++ T + + +GF+ FEN +V + V + Sbjct: 112 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIH 171 Query: 377 --EMNNYLL 397 E+NN ++ Sbjct: 172 FHEINNKMV 180 Score = 35.8 bits (81), Expect = 0.096 Identities = 13/50 (26%), Positives = 29/50 (58%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 ++IG + D ++ +F +FG ++ + R+ T +S+ +GF+ F +P Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADP 72
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 39.3 bits (90), Expect = 0.009 Identities = 18/70 (25%), Positives = 35/70 (50%) Frame = +2 Query: 182 PENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVA 361 P ++IG +P +ED++ ++ G + +R+ + G ++ Y F+ F N A Sbjct: 51 PPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEA 109 Query: 362 KIVADEMNNY 391 K ++NNY Sbjct: 110 KNAIKQLNNY 119
>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein| Length = 138 Score = 39.3 bits (90), Expect = 0.009 Identities = 24/93 (25%), Positives = 45/93 (48%) Frame = +2 Query: 182 PENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVA 361 P +LYI ++P+ ++M F +FGAV+++R+ T +++ F+ +E+ A Sbjct: 14 PPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVG---NTAETRGTAFVVYEDIFDA 70 Query: 362 KIVADEMNNYLLFEHTLQIAPVPLEKVHAKLWK 460 K + ++ Y + L V L K WK Sbjct: 71 KTACEHLSGYNVSNRYL----VVLYYQATKAWK 99
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 38.9 bits (89), Expect = 0.011 Identities = 24/82 (29%), Positives = 39/82 (47%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 + E ATV Y+G + E + F Q G V + ++R TG+ + YGF+EF + Sbjct: 6 ISERNQDATV-YVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64 Query: 353 EVAKIVADEMNNYLLFEHTLQI 418 E A MN L+ +++ Sbjct: 65 EDADYAIKIMNMIKLYGKPIRV 86
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 38.9 bits (89), Expect = 0.011 Identities = 18/65 (27%), Positives = 32/65 (49%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G + + ++ F FG + R+ ++ TGKSK YGF+ F N A+ +M Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 383 NNYLL 397 L Sbjct: 168 GGQWL 172
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 38.9 bits (89), Expect = 0.011 Identities = 18/65 (27%), Positives = 32/65 (49%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G + + ++ F FG + R+ ++ TGKSK YGF+ F N A+ +M Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 383 NNYLL 397 L Sbjct: 168 GGQWL 172
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 38.9 bits (89), Expect = 0.011 Identities = 17/55 (30%), Positives = 32/55 (58%) Frame = +2 Query: 179 EPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF 343 EPEN + ++G + +D M+ F+ QFG + + + R+ T +S+ +GF+ F Sbjct: 18 EPENLRKI-FVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 38.5 bits (88), Expect = 0.015 Identities = 15/51 (29%), Positives = 32/51 (62%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE 355 +++G IPH E +++ +F++FG V V + + + + + +GFI FE+ + Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 165 Score = 37.0 bits (84), Expect = 0.043 Identities = 13/50 (26%), Positives = 32/50 (64%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 L++G + ++ ++ +F Q+G V I +++ T +S+ +GF++F++P Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 38.5 bits (88), Expect = 0.015 Identities = 15/50 (30%), Positives = 31/50 (62%) Frame = +2 Query: 194 ATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF 343 +++L++G++ + ++ F Q G ++RVR+ TGK K +GF++F Sbjct: 227 SSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 38.5 bits (88), Expect = 0.015 Identities = 15/51 (29%), Positives = 32/51 (62%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE 355 +++G IPH E +++ +F++FG V V + + + + + +GFI FE+ + Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 165 Score = 37.0 bits (84), Expect = 0.043 Identities = 13/50 (26%), Positives = 32/50 (64%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 L++G + ++ ++ +F Q+G V I +++ T +S+ +GF++F++P Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 38.5 bits (88), Expect = 0.015 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L++G++ Q+ F+ G V+ V + ++ TG+S+ +GF+ + A + Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160 Query: 383 NNYLLFEHTLQI-APVPLEKVHAKLWKGVRKG 475 N Y L++ A P K +G R G Sbjct: 161 NGYEFEGRPLRVNAGPPPPKREESFSRGPRSG 192 Score = 37.4 bits (85), Expect = 0.033 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 LY+G++ G + ++ F + G V R+ +R +G+SK +GF+ + + + + + Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318 Query: 383 N 385 N Sbjct: 319 N 319
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 38.5 bits (88), Expect = 0.015 Identities = 15/60 (25%), Positives = 35/60 (58%) Frame = +2 Query: 206 YIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMN 385 ++G + ++ ++ F QFG + +I +R+TG+S+ +GF+ F++ + + + MN Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 38.5 bits (88), Expect = 0.015 Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF-ENPEVAKI 367 T L++G I E ++ +F+++G ++ I ++++GK + +GF+ F ++ V KI Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKI 157 Query: 368 V 370 V Sbjct: 158 V 158 Score = 31.2 bits (69), Expect = 2.4 Identities = 13/57 (22%), Positives = 31/57 (54%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF 343 +E + L+IG + E+ ++ F++Q+G + + R+ + +S+ +GF+ F Sbjct: 1 MEREKEQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTF 57
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 38.5 bits (88), Expect = 0.015 Identities = 17/59 (28%), Positives = 33/59 (55%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADE 379 +++G +P E ++ FF ++G V V I +++ KS+ +GF+ FE + V +E Sbjct: 98 VFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156 Score = 33.9 bits (76), Expect = 0.36 Identities = 12/50 (24%), Positives = 30/50 (60%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENP 352 L++G + ++ + +F +FG + + +N ++G+S+ +GF+ F +P Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADP 58
>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 605 Score = 38.5 bits (88), Expect = 0.015 Identities = 20/83 (24%), Positives = 43/83 (51%) Frame = +2 Query: 170 QLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFEN 349 +++ PEN VL++ + ++ ++ F +FG + + R++KTG S Y FIE+E+ Sbjct: 245 EVKPPEN---VLFVCKLNPVTGDEDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIEYED 301 Query: 350 PEVAKIVADEMNNYLLFEHTLQI 418 + +M L+ + + + Sbjct: 302 KASCEAAYFKMQGVLIDDRRIHV 324
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 38.5 bits (88), Expect = 0.015 Identities = 15/49 (30%), Positives = 27/49 (55%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFEN 349 +++G + + ++ F FG + R+ ++ TGKSK YGF+ F N Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 164
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 38.5 bits (88), Expect = 0.015 Identities = 15/49 (30%), Positives = 27/49 (55%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFEN 349 +++G + + ++ F FG + R+ ++ TGKSK YGF+ F N Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 147
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 38.5 bits (88), Expect = 0.015 Identities = 19/54 (35%), Positives = 34/54 (62%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK 364 +++G P E +++ F++F AVK V++ ++ G+SK YGFI FE + A+ Sbjct: 69 IFVGGFPTSTTETELREHFEKFFAVKDVKMVKS-LDGQSKGYGFITFETEDQAE 121
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 38.5 bits (88), Expect = 0.015 Identities = 23/100 (23%), Positives = 51/100 (51%), Gaps = 1/100 (1%) Frame = +2 Query: 128 FLPLEGKEQRIREKQLEEPENTATV-LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNR 304 FL + + + +L+ E+ V L+IG + E+ ++G F+++ + ++ + Sbjct: 67 FLRINNNKSGHKNGKLKSFESKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDS 126 Query: 305 KTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAP 424 T KS +G++ FE+ E A+ +E+N + ++I P Sbjct: 127 VTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMP 166
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 38.5 bits (88), Expect = 0.015 Identities = 18/57 (31%), Positives = 33/57 (57%) Frame = +2 Query: 185 ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE 355 + T+ ++ +G +P E ++ +F FG V V++ ++ KTG SK +GF+ F E Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE 156
>PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein| Length = 121 Score = 38.5 bits (88), Expect = 0.015 Identities = 17/77 (22%), Positives = 40/77 (51%) Frame = +2 Query: 161 REKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIE 340 + + P +LY+ ++P+ D+M F +FGA++++R+ T +++ F+ Sbjct: 3 KRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVG---NTPETRGTAFVV 59 Query: 341 FENPEVAKIVADEMNNY 391 +E+ AK D ++ + Sbjct: 60 YEDIFDAKNACDHLSGF 76
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 38.5 bits (88), Expect = 0.015 Identities = 16/55 (29%), Positives = 34/55 (61%) Frame = +2 Query: 185 ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFEN 349 E+ L+I I + E +++ F+ +G +K++ + ++++GK K Y FIE+E+ Sbjct: 98 EDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEH 152
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 38.1 bits (87), Expect = 0.019 Identities = 18/57 (31%), Positives = 33/57 (57%) Frame = +2 Query: 185 ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE 355 + T+ ++ +G +P E ++ +F FG V V++ ++ KTG SK +GF+ F E Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE 156 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/71 (22%), Positives = 35/71 (49%) Frame = +2 Query: 167 KQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFE 346 KQ ++ + +++G ED+++ FF Q+G V V I + + + F+ F Sbjct: 181 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK-----PFRAFAFVTFA 235 Query: 347 NPEVAKIVADE 379 + ++A+ + E Sbjct: 236 DDQIAQSLCGE 246
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 38.1 bits (87), Expect = 0.019 Identities = 15/64 (23%), Positives = 38/64 (59%), Gaps = 1/64 (1%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE-VAKI 367 T +++G I E ++ +F+++G ++ + + +R++GK + + F+ F++ + V KI Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183 Query: 368 VADE 379 V + Sbjct: 184 VVQK 187
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 38.1 bits (87), Expect = 0.019 Identities = 15/64 (23%), Positives = 38/64 (59%), Gaps = 1/64 (1%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE-VAKI 367 T +++G I E ++ +F+++G ++ + + +R++GK + + F+ F++ + V KI Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183 Query: 368 VADE 379 V + Sbjct: 184 VVQK 187
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 38.1 bits (87), Expect = 0.019 Identities = 17/60 (28%), Positives = 34/60 (56%) Frame = +2 Query: 206 YIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMN 385 ++G + E ++ F QFG + +I +R+TG+S+ +GF+ F++ + K + MN Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 38.1 bits (87), Expect = 0.019 Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE-VAKI 367 T +++G I E ++ +F+Q+G ++ + I +R +GK + + F+ F++ + V KI Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Query: 368 V 370 V Sbjct: 162 V 162 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/60 (25%), Positives = 32/60 (53%) Frame = +2 Query: 176 EEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE 355 +EPE L+IG + ++ ++ F+Q+G + + R+ T +S+ +GF+ + E Sbjct: 7 KEPEQLRK-LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 38.1 bits (87), Expect = 0.019 Identities = 15/64 (23%), Positives = 38/64 (59%), Gaps = 1/64 (1%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE-VAKI 367 T +++G I E ++ +F+++G ++ + + +R++GK + + F+ F++ + V KI Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183 Query: 368 VADE 379 V + Sbjct: 184 VVQK 187
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 38.1 bits (87), Expect = 0.019 Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE-VAKI 367 T +++G I E ++ +F+Q+G ++ + I +R +GK + + F+ F++ + V KI Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Query: 368 V 370 V Sbjct: 162 V 162 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/60 (25%), Positives = 32/60 (53%) Frame = +2 Query: 176 EEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE 355 +EPE L+IG + ++ ++ F+Q+G + + R+ T +S+ +GF+ + E Sbjct: 7 KEPEQLRK-LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 38.1 bits (87), Expect = 0.019 Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE-VAKI 367 T +++G I E ++ +F+Q+G ++ + I +R +GK + + F+ F++ + V KI Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Query: 368 V 370 V Sbjct: 162 V 162 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/60 (25%), Positives = 32/60 (53%) Frame = +2 Query: 176 EEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE 355 +EPE L+IG + ++ ++ F+Q+G + + R+ T +S+ +GF+ + E Sbjct: 7 KEPEQLRK-LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 38.1 bits (87), Expect = 0.019 Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE-VAKI 367 T +++G I E ++ +F+Q+G ++ + I +R +GK + + F+ F++ + V KI Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Query: 368 V 370 V Sbjct: 162 V 162 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/60 (25%), Positives = 32/60 (53%) Frame = +2 Query: 176 EEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE 355 +EPE L+IG + ++ ++ F+Q+G + + R+ T +S+ +GF+ + E Sbjct: 7 KEPEQLRK-LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.1 bits (87), Expect = 0.019 Identities = 22/94 (23%), Positives = 46/94 (48%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK 316 L + +R+R K+ P +YI ++ +++++ F FG++ R ++ + G+ Sbjct: 284 LRRRFERLRLKEKSRPPGVP--IYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQ 339 Query: 317 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 418 K +G + F + E A DEMN ++ L + Sbjct: 340 GKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373 Score = 36.2 bits (82), Expect = 0.073 Identities = 19/72 (26%), Positives = 42/72 (58%) Frame = +2 Query: 149 EQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHY 328 E+R E + + T T +++ +I +++++ F ++G + V++ R+ +GKSK + Sbjct: 184 EERAAEVRTRD-RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGF 241 Query: 329 GFIEFENPEVAK 364 GF+ +E E A+ Sbjct: 242 GFVRYETHEAAQ 253
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.1 bits (87), Expect = 0.019 Identities = 22/94 (23%), Positives = 46/94 (48%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK 316 L + +R+R K+ P +YI ++ +++++ F FG++ R ++ + G+ Sbjct: 284 LRRRFERLRLKEKSRPPGVP--IYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQ 339 Query: 317 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 418 K +G + F + E A DEMN ++ L + Sbjct: 340 GKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373 Score = 36.2 bits (82), Expect = 0.073 Identities = 19/72 (26%), Positives = 42/72 (58%) Frame = +2 Query: 149 EQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHY 328 E+R E + + T T +++ +I +++++ F ++G + V++ R+ +GKSK + Sbjct: 184 EERAAEVRTRD-RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGF 241 Query: 329 GFIEFENPEVAK 364 GF+ +E E A+ Sbjct: 242 GFVRYETHEAAQ 253
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.1 bits (87), Expect = 0.019 Identities = 22/94 (23%), Positives = 46/94 (48%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK 316 L + +R+R K+ P +YI ++ +++++ F FG++ R ++ + G+ Sbjct: 284 LRRRFERLRLKEKSRPPGVP--IYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQ 339 Query: 317 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 418 K +G + F + E A DEMN ++ L + Sbjct: 340 GKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373 Score = 36.2 bits (82), Expect = 0.073 Identities = 19/72 (26%), Positives = 42/72 (58%) Frame = +2 Query: 149 EQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHY 328 E+R E + + T T +++ +I +++++ F ++G + V++ R+ +GKSK + Sbjct: 184 EERAAEVRTRD-RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGF 241 Query: 329 GFIEFENPEVAK 364 GF+ +E E A+ Sbjct: 242 GFVRYETHEAAQ 253
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.1 bits (87), Expect = 0.019 Identities = 22/94 (23%), Positives = 46/94 (48%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK 316 L + +R+R K+ P +YI ++ +++++ F FG++ R ++ + G+ Sbjct: 284 LRRRFERLRLKEKSRPPGVP--IYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQ 339 Query: 317 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 418 K +G + F + E A DEMN ++ L + Sbjct: 340 GKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373 Score = 36.2 bits (82), Expect = 0.073 Identities = 19/72 (26%), Positives = 42/72 (58%) Frame = +2 Query: 149 EQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHY 328 E+R E + + T T +++ +I +++++ F ++G + V++ R+ +GKSK + Sbjct: 184 EERAAEVRTRD-RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGF 241 Query: 329 GFIEFENPEVAK 364 GF+ +E E A+ Sbjct: 242 GFVRYETHEAAQ 253
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.1 bits (87), Expect = 0.019 Identities = 22/94 (23%), Positives = 46/94 (48%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK 316 L + +R+R K+ P +YI ++ +++++ F FG++ R ++ + G+ Sbjct: 284 LRRRFERLRLKEKSRPPGVP--IYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQ 339 Query: 317 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 418 K +G + F + E A DEMN ++ L + Sbjct: 340 GKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373 Score = 36.2 bits (82), Expect = 0.073 Identities = 19/72 (26%), Positives = 42/72 (58%) Frame = +2 Query: 149 EQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHY 328 E+R E + + T T +++ +I +++++ F ++G + V++ R+ +GKSK + Sbjct: 184 EERAAEVRTRD-RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGF 241 Query: 329 GFIEFENPEVAK 364 GF+ +E E A+ Sbjct: 242 GFVRYETHEAAQ 253
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 38.1 bits (87), Expect = 0.019 Identities = 16/72 (22%), Positives = 38/72 (52%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +YIG++ E + F ++G V ++R+ TG+S+ + ++++E+ + D + Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92 Query: 383 NNYLLFEHTLQI 418 N + + L+I Sbjct: 93 NGFKIGGRALKI 104
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 37.7 bits (86), Expect = 0.025 Identities = 23/74 (31%), Positives = 37/74 (50%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G I E + F +G VK +I +R G SK YGF+ FE + A+ + + Sbjct: 35 IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQRLQADG 93 Query: 383 NNYLLFEHTLQIAP 424 +L + L IAP Sbjct: 94 ECVVLRDRKLNIAP 107
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 37.7 bits (86), Expect = 0.025 Identities = 22/64 (34%), Positives = 33/64 (51%) Frame = +2 Query: 197 TVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVAD 376 T L++G + E +Q + G +V++ RNR TG + Y F+EF +P A A Sbjct: 93 TTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEAS-SAM 151 Query: 377 EMNN 388 MNN Sbjct: 152 SMNN 155 Score = 33.5 bits (75), Expect = 0.48 Identities = 17/75 (22%), Positives = 39/75 (52%) Frame = +2 Query: 197 TVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVAD 376 + +++G + E++++ FQ FG + V+I K GF++F N + A+I + Sbjct: 303 STVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP------PGKGCGFVQFVNRQSAEIAIN 356 Query: 377 EMNNYLLFEHTLQIA 421 ++ Y L ++++ Sbjct: 357 QLQGYPLGNSRIRLS 371
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 37.7 bits (86), Expect = 0.025 Identities = 23/95 (24%), Positives = 48/95 (50%) Frame = +2 Query: 134 PLEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTG 313 P +G+ Q + + E ++ L++ +IP F + ++ F QFG + V I N + Sbjct: 96 PTDGQPQT-QPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-- 152 Query: 314 KSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 418 SK +GF+ FEN A ++++ ++ +++ Sbjct: 153 GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 187
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 37.7 bits (86), Expect = 0.025 Identities = 22/74 (29%), Positives = 37/74 (50%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +Y+G +P+G E ++ FF+ +G + + I K G YGF+EFE+ A E+ Sbjct: 5 VYVGGLPYGVRERDLERFFKGYGRTRDILI----KNG----YGFVEFEDYRDADDAVYEL 56 Query: 383 NNYLLFEHTLQIAP 424 N L + + P Sbjct: 57 NGKELLGERVVVEP 70
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 37.7 bits (86), Expect = 0.025 Identities = 19/88 (21%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE-VAKI 367 T +++G I E ++ +F+ +G ++ + + +R++GK + + F+ F++ + V KI Sbjct: 116 TVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 175 Query: 368 VADEMNNYLLFEHTLQIAPVPLEKVHAK 451 V + HT+ + ++K +K Sbjct: 176 VVQKY-------HTINLHNCEVKKALSK 196 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/56 (26%), Positives = 32/56 (57%) Frame = +2 Query: 176 EEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF 343 +EPE L+IG + +D ++ F+Q+G + + R+ +T +S+ +GF+ + Sbjct: 21 KEPEQLRK-LFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTY 75
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 37.7 bits (86), Expect = 0.025 Identities = 22/94 (23%), Positives = 46/94 (48%) Frame = +2 Query: 137 LEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGK 316 L + +R+R K+ P +YI ++ +++++ F FG++ R ++ + G+ Sbjct: 284 LRRRFERLRLKEKSRPPGVP--IYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQ 339 Query: 317 SKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 418 K +G + F + E A DEMN ++ L + Sbjct: 340 GKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHV 373 Score = 36.2 bits (82), Expect = 0.073 Identities = 19/72 (26%), Positives = 42/72 (58%) Frame = +2 Query: 149 EQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHY 328 E+R E + + T T +++ +I +++++ F ++G + V++ R+ +GKSK + Sbjct: 184 EERAAEVRTRD-RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGF 241 Query: 329 GFIEFENPEVAK 364 GF+ +E E A+ Sbjct: 242 GFVRYETHEAAQ 253
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 37.4 bits (85), Expect = 0.033 Identities = 23/95 (24%), Positives = 48/95 (50%) Frame = +2 Query: 134 PLEGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTG 313 P +G+ Q + + E ++ L++ +IP F + ++ F QFG + V I N + Sbjct: 97 PTDGQPQT-QPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-- 153 Query: 314 KSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQI 418 SK +GF+ FEN A ++++ ++ +++ Sbjct: 154 GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 188
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 37.4 bits (85), Expect = 0.033 Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE-VAKI 367 T L++G I E ++ +F+++G + + I ++++GK + + F+ F++ + V KI Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKI 157 Query: 368 V 370 V Sbjct: 158 V 158 Score = 30.4 bits (67), Expect = 4.0 Identities = 12/57 (21%), Positives = 31/57 (54%) Frame = +2 Query: 173 LEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF 343 +E + L+IG + E+ ++ +++Q+G + + R+ + +S+ +GF+ F Sbjct: 1 MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTF 57
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 37.4 bits (85), Expect = 0.033 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Frame = +2 Query: 191 TATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF-ENPEVAKI 367 T +++G I E ++ +F+Q+G ++ + I +R +GK + + F+ F ++ V KI Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKI 161 Query: 368 V 370 V Sbjct: 162 V 162 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/60 (25%), Positives = 32/60 (53%) Frame = +2 Query: 176 EEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPE 355 +EPE L+IG + ++ ++ F+Q+G + + R+ T +S+ +GF+ + E Sbjct: 7 KEPEQLRK-LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 37.0 bits (84), Expect = 0.043 Identities = 26/99 (26%), Positives = 46/99 (46%) Frame = +2 Query: 185 ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK 364 E A +++G + + ++ +F +FG V I + TG+S+ +GFI F++ + Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130 Query: 365 IVADEMNNYLLFEHTLQIAPVPLEKVHAKLWKGVRKGFV 481 V D+ EH L + +K A V+K FV Sbjct: 131 KVLDQK------EHRLDGRVIDPKKAMAMKKDPVKKIFV 163 Score = 32.3 bits (72), Expect = 1.1 Identities = 18/87 (20%), Positives = 44/87 (50%), Gaps = 6/87 (6%) Frame = +2 Query: 137 LEGKEQRIR------EKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIAR 298 L+ KE R+ +K + ++ +++G + E++++ +F QFG ++ + + Sbjct: 133 LDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPI 192 Query: 299 NRKTGKSKHYGFIEFENPEVAKIVADE 379 + K K + + FI F+ + K V ++ Sbjct: 193 DPKLNKRRGFVFITFKEEDPVKKVLEK 219
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 37.0 bits (84), Expect = 0.043 Identities = 19/78 (24%), Positives = 39/78 (50%) Frame = +2 Query: 185 ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK 364 E +++G++ E+ + F Q G + +V I ++R+ GK K +GF+ F++PE Sbjct: 6 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVS 64 Query: 365 IVADEMNNYLLFEHTLQI 418 +N L+ + + Sbjct: 65 YAIALLNGIRLYGRPINV 82
>NOP12_SCHPO (O13741) Nucleolar protein 12| Length = 438 Score = 37.0 bits (84), Expect = 0.043 Identities = 15/56 (26%), Positives = 33/56 (58%) Frame = +2 Query: 182 PENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFEN 349 P++T +++G++ E+ + +F G++ VRI R+ KT K + +I+F++ Sbjct: 265 PQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 36.6 bits (83), Expect = 0.056 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = +2 Query: 260 QQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNN 388 + F R RI +R+TG SK +GF++F + E AK + M + Sbjct: 589 ESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 631 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/82 (25%), Positives = 37/82 (45%) Frame = +2 Query: 140 EGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKS 319 +G+ Q R + + L + ++ + E+ +Q F++ +K + GKS Sbjct: 466 KGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKS 521 Query: 320 KHYGFIEFENPEVAKIVADEMN 385 K Y FIEF + E AK + N Sbjct: 522 KGYAFIEFASFEDAKEALNSCN 543 Score = 29.6 bits (65), Expect = 6.9 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%) Frame = +2 Query: 131 LPLEGKEQRIREKQLEEP-------ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVR 289 L L G + E +LE+P E A L ++P+ +D+++ F+ ++ V Sbjct: 363 LELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS 422 Query: 290 IARNRKTGKSKHYGFIEFENPEVAKIVADE 379 K GKSK +IEF+ A+ +E Sbjct: 423 -----KDGKSKGIAYIEFKTEADAEKTFEE 447
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 36.6 bits (83), Expect = 0.056 Identities = 26/99 (26%), Positives = 46/99 (46%) Frame = +2 Query: 185 ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAK 364 E A +++G + + ++ +F +FG V I + TG+S+ +GFI F++ + Sbjct: 64 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 123 Query: 365 IVADEMNNYLLFEHTLQIAPVPLEKVHAKLWKGVRKGFV 481 V D+ EH L + +K A V+K FV Sbjct: 124 KVLDQK------EHRLDGRVIDPKKAMAMKKDPVKKIFV 156
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 36.6 bits (83), Expect = 0.056 Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 3/145 (2%) Frame = +2 Query: 149 EQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHY 328 E+ +E Q E + L + ++ + E+ +Q F++ ++K + G+ K Y Sbjct: 445 EKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIKMPQ----NNQGRPKGY 500 Query: 329 GFIEFENPEVAKIVADEMNNYLLFEHTLQIAPVPLEKVHAKLWKG---VRKGFVPVDRVA 499 F+EF E AK + NN ++ + LE KG R GF + Sbjct: 501 AFVEFPTAEDAKEALNSCNN-----TEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTL 555 Query: 500 IERKRLSKDKTVEEHKRMLEGNCKA 574 R LS+D T E + EG+ A Sbjct: 556 FVR-GLSEDTTEETLRESFEGSISA 579 Score = 35.8 bits (81), Expect = 0.096 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = +2 Query: 287 RIARNRKTGKSKHYGFIEFENPEVAKIVADEMNN 388 RI +R TG SK +GF++F +PE AK + M + Sbjct: 580 RIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMED 613
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 36.6 bits (83), Expect = 0.056 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = +2 Query: 260 QQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNN 388 + F R RI +R+TG SK +GF++F + E AK + M + Sbjct: 591 ESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 633 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/82 (25%), Positives = 37/82 (45%) Frame = +2 Query: 140 EGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKS 319 +G+ Q R + + L + ++ + E+ +Q F++ +K + GKS Sbjct: 468 KGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKS 523 Query: 320 KHYGFIEFENPEVAKIVADEMN 385 K Y FIEF + E AK + N Sbjct: 524 KGYAFIEFASFEDAKEALNSCN 545 Score = 29.6 bits (65), Expect = 6.9 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%) Frame = +2 Query: 131 LPLEGKEQRIREKQLEEP-------ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVR 289 L L G + E +LE+P E A L ++P+ +D+++ F+ ++ V Sbjct: 365 LELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS 424 Query: 290 IARNRKTGKSKHYGFIEFENPEVAKIVADE 379 K GKSK +IEF+ A+ +E Sbjct: 425 -----KDGKSKGIAYIEFKTEADAEKTFEE 449
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 36.6 bits (83), Expect = 0.056 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = +2 Query: 260 QQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNN 388 + F R RI +R+TG SK +GF++F + E AK + M + Sbjct: 590 ESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 632 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/82 (25%), Positives = 37/82 (45%) Frame = +2 Query: 140 EGKEQRIREKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKS 319 +G+ Q R + + L + ++ + E+ +Q F++ +K + GKS Sbjct: 467 KGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKS 522 Query: 320 KHYGFIEFENPEVAKIVADEMN 385 K Y FIEF + E AK + N Sbjct: 523 KGYAFIEFASFEDAKEALNSCN 544 Score = 29.6 bits (65), Expect = 6.9 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%) Frame = +2 Query: 131 LPLEGKEQRIREKQLEEP-------ENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVR 289 L L G + E +LE+P E A L ++P+ +D+++ F+ ++ V Sbjct: 364 LELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS 423 Query: 290 IARNRKTGKSKHYGFIEFENPEVAKIVADE 379 K GKSK +IEF+ A+ +E Sbjct: 424 -----KDGKSKGIAYIEFKTEADAEKTFEE 448
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 36.6 bits (83), Expect = 0.056 Identities = 16/60 (26%), Positives = 34/60 (56%) Frame = +2 Query: 206 YIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMN 385 ++G + + ++ F Q+G V +I +R+TG+S+ +GF+ F++ + K + MN Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70
>HSH49_YEAST (Q99181) Protein HSH49| Length = 213 Score = 36.6 bits (83), Expect = 0.056 Identities = 24/108 (22%), Positives = 51/108 (47%), Gaps = 2/108 (1%) Frame = +2 Query: 188 NTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKI 367 ++ +Y+G+I ++Q+ F Q V R++ +++ + Y FIEF N A+ Sbjct: 6 DSGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQY 65 Query: 368 VADEMNNYL-LFEHTLQIAPVPLEKVHAKLWKGVRKGFV-PVDRVAIE 505 MNN + L++ +++ V L + K + P+ ++ I+ Sbjct: 66 AIKIMNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIK 113
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 36.2 bits (82), Expect = 0.073 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = +2 Query: 260 QQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNN 388 + F R RI +R+TG SK +GF++F + E AK + M + Sbjct: 592 ESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 634 Score = 30.4 bits (67), Expect = 4.0 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 1/125 (0%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L + ++ + E+ +Q F++ +K GKSK Y FIEF + E AK + Sbjct: 490 LVLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDAKEALNSC 545 Query: 383 NNYLLFEHTLQI-APVPLEKVHAKLWKGVRKGFVPVDRVAIERKRLSKDKTVEEHKRMLE 559 N + T+++ P +A+ + + FV K LS+D T E K E Sbjct: 546 NKMEIEGRTIRLELQGPRGSPNARS-QPSKTLFV---------KGLSEDTTEETLKESFE 595 Query: 560 GNCKA 574 G+ +A Sbjct: 596 GSVRA 600
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 36.2 bits (82), Expect = 0.073 Identities = 16/60 (26%), Positives = 34/60 (56%) Frame = +2 Query: 206 YIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMN 385 ++G + + ++ F Q+G V +I +R+TG+S+ +GF+ F++ + K + MN Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 36.2 bits (82), Expect = 0.073 Identities = 18/77 (23%), Positives = 37/77 (48%) Frame = +2 Query: 188 NTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKI 367 N +Y+G + E + F FG + +++ + ++ + + + FIE+E E A Sbjct: 3 NDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAA 62 Query: 368 VADEMNNYLLFEHTLQI 418 D MN+ L T+++ Sbjct: 63 AIDNMNDSELCGRTIRV 79
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 36.2 bits (82), Expect = 0.073 Identities = 16/71 (22%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Frame = +2 Query: 185 ENTATV-LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVA 361 + ++TV L++G +P E++++ +F+Q G V V + ++++TG+ + F+++ + A Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174 Query: 362 KIVADEMNNYL 394 ++N + Sbjct: 175 DRAIRALHNQI 185 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/61 (27%), Positives = 34/61 (55%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L++G + E +++ F QFG V+ V + R+ + +S+ GF+++ + E A D + Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGL 271 Query: 383 N 385 N Sbjct: 272 N 272
>DND1_BRARE (Q7T1H5) Dead end protein 1| Length = 411 Score = 36.2 bits (82), Expect = 0.073 Identities = 17/67 (25%), Positives = 35/67 (52%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 ++I IP+ YED++ FQ G + R+ N +G+++ + + ++ +P A + Sbjct: 62 VFISQIPNDVYEDRLIPLFQSIGTIYEFRLMMN-FSGQTRGFAYAKYGDPLTASAAVTTL 120 Query: 383 NNYLLFE 403 + Y L E Sbjct: 121 HQYRLPE 127
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 36.2 bits (82), Expect = 0.073 Identities = 17/38 (44%), Positives = 25/38 (65%) Frame = +2 Query: 236 EDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFEN 349 ED ++ F QFGAV V I R + GK + +GF++F+N Sbjct: 126 EDDLKTVFAQFGAVLEVNIPR-KPDGKMRGFGFVQFKN 162 Score = 35.4 bits (80), Expect = 0.13 Identities = 19/68 (27%), Positives = 34/68 (50%) Frame = +2 Query: 161 REKQLEEPENTATVLYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIE 340 ++++L N ++I ++ E+++ QQFG +K VRI + T SK F + Sbjct: 322 KKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQ 381 Query: 341 FENPEVAK 364 F E A+ Sbjct: 382 FMTQEAAQ 389
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 36.2 bits (82), Expect = 0.073 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = +2 Query: 260 QQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNN 388 + F R RI +R+TG SK +GF++F + E AK + M + Sbjct: 589 ESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 631 Score = 32.3 bits (72), Expect = 1.1 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 1/125 (0%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L + ++ + E+ +Q F++ +K + +N++ GKSK Y FIEF + E AK + Sbjct: 487 LVLSNLSYSATEETLQEVFEKATFIK---VPQNQQ-GKSKGYAFIEFASFEDAKEALNSC 542 Query: 383 NNYLLFEHTLQI-APVPLEKVHAKLWKGVRKGFVPVDRVAIERKRLSKDKTVEEHKRMLE 559 N + T+++ P +A+ + + FV K LS+D T E K E Sbjct: 543 NKMEIEGRTIRLELQGPRGSPNARS-QPSKTLFV---------KGLSEDTTEETLKESFE 592 Query: 560 GNCKA 574 G+ +A Sbjct: 593 GSVRA 597
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 36.2 bits (82), Expect = 0.073 Identities = 17/63 (26%), Positives = 34/63 (53%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +Y+G++P E +++ F ++G +K V I K+G+ + F+EFE+ A+ Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDI----KSGRGPAFAFVEFEDHRDAEDAVRAR 66 Query: 383 NNY 391 + Y Sbjct: 67 DGY 69
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 35.8 bits (81), Expect = 0.096 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 7/75 (9%) Frame = +2 Query: 140 EGKEQRIREKQLEEPENTATV-------LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIAR 298 +G E+ + + +P N L++ + + E +++ F+ +G +KRV + Sbjct: 112 KGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVT 171 Query: 299 NRKTGKSKHYGFIEF 343 ++ T K K Y FIE+ Sbjct: 172 DQLTNKPKGYAFIEY 186
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 35.8 bits (81), Expect = 0.096 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 20/76 (26%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRI-----ARNR--------------KTGKSKH 325 LY+ HIP + ++ + F++ FG + V++ ++N+ G S+ Sbjct: 542 LYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGSSRG 601 Query: 326 YGFIEFENP-EVAKIV 370 YGF+ FE+P + AK + Sbjct: 602 YGFVSFESPLDAAKAI 617 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/72 (20%), Positives = 33/72 (45%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 +++G I ++ F ++G + +++ ++ G+ YGFI + A + E+ Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 383 NNYLLFEHTLQI 418 N + TL I Sbjct: 257 NGRTVNGSTLFI 268
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 35.8 bits (81), Expect = 0.096 Identities = 18/87 (20%), Positives = 45/87 (51%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L++G + E +++ F ++G ++ + + + +TG+S+ + FI F N E V+ Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAAD 117 Query: 383 NNYLLFEHTLQIAPVPLEKVHAKLWKG 463 + + ++ ++ P + H K++ G Sbjct: 118 EHII---NSKKVDPKKAKARHGKIFVG 141 Score = 30.0 bits (66), Expect = 5.3 Identities = 11/52 (21%), Positives = 31/52 (59%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEV 358 +++G + +++++ +F QFG + V + +++ + K + FI F++ +V Sbjct: 138 IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQV 189
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 35.4 bits (80), Expect = 0.13 Identities = 18/65 (27%), Positives = 33/65 (50%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L+IG++P E +++ F+Q+G V I +N YGF+ E+ A+ + Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55 Query: 383 NNYLL 397 ++Y L Sbjct: 56 HHYKL 60
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 35.4 bits (80), Expect = 0.13 Identities = 18/65 (27%), Positives = 33/65 (50%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L+IG++P E +++ F+Q+G V I +N YGF+ E+ A+ + Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55 Query: 383 NNYLL 397 ++Y L Sbjct: 56 HHYKL 60
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 35.4 bits (80), Expect = 0.13 Identities = 18/65 (27%), Positives = 33/65 (50%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVADEM 382 L+IG++P E +++ F+Q+G V I +N YGF+ E+ A+ + Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55 Query: 383 NNYLL 397 ++Y L Sbjct: 56 HHYKL 60
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 35.4 bits (80), Expect = 0.13 Identities = 15/69 (21%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVAD-- 376 +++G + + ++ +F+QFG V + ++ T + + +GF+ FE+ ++ + V + Sbjct: 111 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIH 170 Query: 377 --EMNNYLL 397 E+NN ++ Sbjct: 171 FHEINNKMV 179 Score = 33.9 bits (76), Expect = 0.36 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF-ENPEVAKIVA 373 ++IG + ++ ++ +F QFG VK + R+ T +S+ +GF+ F + V K++A Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 35.4 bits (80), Expect = 0.13 Identities = 15/69 (21%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEFENPEVAKIVAD-- 376 +++G + + ++ +F+QFG V + ++ T + + +GF+ FE+ ++ + V + Sbjct: 111 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIH 170 Query: 377 --EMNNYLL 397 E+NN ++ Sbjct: 171 FHEINNKMV 179 Score = 33.9 bits (76), Expect = 0.36 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Frame = +2 Query: 203 LYIGHIPHGFYEDQMQGFFQQFGAVKRVRIARNRKTGKSKHYGFIEF-ENPEVAKIVA 373 ++IG + ++ ++ +F QFG VK + R+ T +S+ +GF+ F + V K++A Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,029,247 Number of Sequences: 219361 Number of extensions: 1308449 Number of successful extensions: 4509 Number of sequences better than 10.0: 345 Number of HSP's better than 10.0 without gapping: 4137 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4461 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
