ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd17o12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197359.1| Oryza sativa (japonica cultivar-group) putative sphingosine kinase (OSJNBa0076F20.14), mRNA Length = 2274 Score = 157 bits (79), Expect = 4e-35 Identities = 139/159 (87%) Strand = Plus / Plus Query: 302 cagaagtctgaccatcacgagcagaatcttacttcaccaaggggactgatccataaagtg 361 ||||||||||| ||||| ||||||||||||||||||||||| || || |||||||||||| Sbjct: 10 cagaagtctgatcatcatgagcagaatcttacttcaccaagagggctaatccataaagtg 69 Query: 362 cttcgtcgtacaaatagcaggcgatctccaactgcagcagagcaagatccttctcctgta 421 || ||||| |||| ||||||||| ||||||||||||||||| || | |||||||||||| Sbjct: 70 ctgcgtcgcacaagtagcaggcgttctccaactgcagcagaccataacccttctcctgta 129 Query: 422 tttgcagaaacaagcaatactaaattcttaaagcaaaag 460 || || ||||||||| | |||||||||||||||||| Sbjct: 130 ttcctggagacaagcaattcaaaattcttaaagcaaaag 168
>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence Length = 165394 Score = 157 bits (79), Expect = 4e-35 Identities = 139/159 (87%) Strand = Plus / Plus Query: 302 cagaagtctgaccatcacgagcagaatcttacttcaccaaggggactgatccataaagtg 361 ||||||||||| ||||| ||||||||||||||||||||||| || || |||||||||||| Sbjct: 73950 cagaagtctgatcatcatgagcagaatcttacttcaccaagagggctaatccataaagtg 74009 Query: 362 cttcgtcgtacaaatagcaggcgatctccaactgcagcagagcaagatccttctcctgta 421 || ||||| |||| ||||||||| ||||||||||||||||| || | |||||||||||| Sbjct: 74010 ctgcgtcgcacaagtagcaggcgttctccaactgcagcagaccataacccttctcctgta 74069 Query: 422 tttgcagaaacaagcaatactaaattcttaaagcaaaag 460 || || ||||||||| | |||||||||||||||||| Sbjct: 74070 ttcctggagacaagcaattcaaaattcttaaagcaaaag 74108
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 157 bits (79), Expect = 4e-35 Identities = 139/159 (87%) Strand = Plus / Plus Query: 302 cagaagtctgaccatcacgagcagaatcttacttcaccaaggggactgatccataaagtg 361 ||||||||||| ||||| ||||||||||||||||||||||| || || |||||||||||| Sbjct: 19446084 cagaagtctgatcatcatgagcagaatcttacttcaccaagagggctaatccataaagtg 19446143 Query: 362 cttcgtcgtacaaatagcaggcgatctccaactgcagcagagcaagatccttctcctgta 421 || ||||| |||| ||||||||| ||||||||||||||||| || | |||||||||||| Sbjct: 19446144 ctgcgtcgcacaagtagcaggcgttctccaactgcagcagaccataacccttctcctgta 19446203 Query: 422 tttgcagaaacaagcaatactaaattcttaaagcaaaag 460 || || ||||||||| | |||||||||||||||||| Sbjct: 19446204 ttcctggagacaagcaattcaaaattcttaaagcaaaag 19446242 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cctcgccgccatcgccgttc 107 |||||||||||||||||||| Sbjct: 7529581 cctcgccgccatcgccgttc 7529562
>dbj|AK121309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112D12, full insert sequence Length = 3328 Score = 157 bits (79), Expect = 4e-35 Identities = 139/159 (87%) Strand = Plus / Plus Query: 302 cagaagtctgaccatcacgagcagaatcttacttcaccaaggggactgatccataaagtg 361 ||||||||||| ||||| ||||||||||||||||||||||| || || |||||||||||| Sbjct: 260 cagaagtctgatcatcatgagcagaatcttacttcaccaagagggctaatccataaagtg 319 Query: 362 cttcgtcgtacaaatagcaggcgatctccaactgcagcagagcaagatccttctcctgta 421 || ||||| |||| ||||||||| ||||||||||||||||| || | |||||||||||| Sbjct: 320 ctgcgtcgcacaagtagcaggcgttctccaactgcagcagaccataacccttctcctgta 379 Query: 422 tttgcagaaacaagcaatactaaattcttaaagcaaaag 460 || || ||||||||| | |||||||||||||||||| Sbjct: 380 ttcctggagacaagcaattcaaaattcttaaagcaaaag 418
>dbj|AK070811.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073O10, full insert sequence Length = 3437 Score = 157 bits (79), Expect = 4e-35 Identities = 139/159 (87%) Strand = Plus / Plus Query: 302 cagaagtctgaccatcacgagcagaatcttacttcaccaaggggactgatccataaagtg 361 ||||||||||| ||||| ||||||||||||||||||||||| || || |||||||||||| Sbjct: 351 cagaagtctgatcatcatgagcagaatcttacttcaccaagagggctaatccataaagtg 410 Query: 362 cttcgtcgtacaaatagcaggcgatctccaactgcagcagagcaagatccttctcctgta 421 || ||||| |||| ||||||||| ||||||||||||||||| || | |||||||||||| Sbjct: 411 ctgcgtcgcacaagtagcaggcgttctccaactgcagcagaccataacccttctcctgta 470 Query: 422 tttgcagaaacaagcaatactaaattcttaaagcaaaag 460 || || ||||||||| | |||||||||||||||||| Sbjct: 471 ttcctggagacaagcaattcaaaattcttaaagcaaaag 509
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 157 bits (79), Expect = 4e-35 Identities = 139/159 (87%) Strand = Plus / Plus Query: 302 cagaagtctgaccatcacgagcagaatcttacttcaccaaggggactgatccataaagtg 361 ||||||||||| ||||| ||||||||||||||||||||||| || || |||||||||||| Sbjct: 19457360 cagaagtctgatcatcatgagcagaatcttacttcaccaagagggctaatccataaagtg 19457419 Query: 362 cttcgtcgtacaaatagcaggcgatctccaactgcagcagagcaagatccttctcctgta 421 || ||||| |||| ||||||||| ||||||||||||||||| || | |||||||||||| Sbjct: 19457420 ctgcgtcgcacaagtagcaggcgttctccaactgcagcagaccataacccttctcctgta 19457479 Query: 422 tttgcagaaacaagcaatactaaattcttaaagcaaaag 460 || || ||||||||| | |||||||||||||||||| Sbjct: 19457480 ttcctggagacaagcaattcaaaattcttaaagcaaaag 19457518 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cctcgccgccatcgccgttc 107 |||||||||||||||||||| Sbjct: 7533780 cctcgccgccatcgccgttc 7533761
>emb|AJ507214.1|HVU507214 Hordeum vulgare bbr gene for barley B recombinant Length = 4946 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 77 cctctcgcgcgcctcgccgccatcgccgttcccgttgtacctcgtcgc 124 |||||| ||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 1688 cctctcacgcgcctcgccgccatcgccgatcccgttcttcctcgtcgc 1735
>gb|M60598.1|WHTDHDPD17 T.aestivum dihydrodipicolinate synthase (DHDPS) mRNA, complete cds, clone pDA17 Length = 1458 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 74 ccgcctctcgcgcgcctcgccgccatcgccgttcccgtt 112 ||||||||||||||| |||||||| |||||||||||||| Sbjct: 138 ccgcctctcgcgcgcgtcgccgccgtcgccgttcccgtt 176
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 82 cgcgcgcctcgccgccatcgccgttc 107 ||||||||||||||||||||| |||| Sbjct: 1503084 cgcgcgcctcgccgccatcgcggttc 1503109
>gb|AC102540.7| Mus musculus chromosome 3, clone RP23-98H24, complete sequence Length = 207497 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 288 agaagaaagagatgcagaagtc 309 |||||||||||||||||||||| Sbjct: 187606 agaagaaagagatgcagaagtc 187585
>gb|AC118595.6| Mus musculus chromosome 3, clone RP24-481I21, complete sequence Length = 248188 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 288 agaagaaagagatgcagaagtc 309 |||||||||||||||||||||| Sbjct: 33303 agaagaaagagatgcagaagtc 33282
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 79 tctcgcgcgcctcgccgccatc 100 |||||||||||||||||||||| Sbjct: 3520515 tctcgcgcgcctcgccgccatc 3520494
>dbj|AK081034.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930072F01 product:unclassifiable, full insert sequence Length = 1916 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 288 agaagaaagagatgcagaagtc 309 |||||||||||||||||||||| Sbjct: 1839 agaagaaagagatgcagaagtc 1818
>gb|AE009489.1| Brucella melitensis 16M chromosome I, section 46 of 195 of the complete sequence Length = 11589 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 82 cgcgcgcctcgccgccatcgccgttc 107 ||||||||||||||||||||| |||| Sbjct: 1475 cgcgcgcctcgccgccatcgcggttc 1450
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 82 cgcgcgcctcgccgccatcgccgttc 107 ||||||||||||||||||||| |||| Sbjct: 1521133 cgcgcgcctcgccgccatcgcggttc 1521158
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 82 cgcgcgcctcgccgccatcgccgttc 107 ||||||||||||||||||||| |||| Sbjct: 1518287 cgcgcgcctcgccgccatcgcggttc 1518312
>gb|DQ208711.1| Fowl adenovirus 8 ORF0, ORF1, ORF1A/B, ORF1C, ORF2, ORF24, ORF14, ORF14a, ORF13, ORF12, and IVa2 genes, complete cds; and unknown gene Length = 7551 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 cgcgcgcctcgccgccatcgc 102 ||||||||||||||||||||| Sbjct: 4708 cgcgcgcctcgccgccatcgc 4688
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 tcgcgcgcctcgccgccatcg 101 ||||||||||||||||||||| Sbjct: 2929729 tcgcgcgcctcgccgccatcg 2929749
>emb|Z68216.1|CEF27C8 Caenorhabditis elegans Cosmid F27C8, complete sequence Length = 33837 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 aaattcttaaagcaaaagaat 463 ||||||||||||||||||||| Sbjct: 2520 aaattcttaaagcaaaagaat 2540
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 82 cgcgcgcctcgccgccatcgccgtt 106 ||||||||||| ||||||||||||| Sbjct: 1018022 cgcgcgcctcggcgccatcgccgtt 1017998
>emb|BX322601.9| Zebrafish DNA sequence from clone DKEY-170H8 in linkage group 7, complete sequence Length = 210153 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tggatttatgtttagaagaaagaga 299 ||||| ||||||||||||||||||| Sbjct: 91350 tggatatatgtttagaagaaagaga 91326
>emb|BX088704.7| Zebrafish DNA sequence from clone CH211-208M6 in linkage group 7, complete sequence Length = 209042 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tggatttatgtttagaagaaagaga 299 ||||| ||||||||||||||||||| Sbjct: 106286 tggatatatgtttagaagaaagaga 106262
>emb|BX323029.6| Zebrafish DNA sequence from clone CH211-261O16, complete sequence Length = 175261 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 275 tggatttatgtttagaagaaagaga 299 ||||| ||||||||||||||||||| Sbjct: 3942 tggatatatgtttagaagaaagaga 3966
>gb|AC164973.4| Ornithorhynchus anatinus BAC clone OABb-265H16 from chromosome unknown, complete sequence Length = 129291 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 39 catagtcacccctccgcctcacccc 63 |||||||||||||||||||| |||| Sbjct: 114710 catagtcacccctccgcctctcccc 114734
>dbj|AK115837.1| Ciona intestinalis cDNA, clone:cilv028o10, full insert sequence Length = 1330 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 gtctgaccatcacgagcagaa 327 ||||||||||||||||||||| Sbjct: 492 gtctgaccatcacgagcagaa 472
>gb|DQ217417.1| Oreochromis mossambicus heat shock 90kDa protein 1 beta isoform a mRNA, partial cds Length = 751 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 200 ctgcagcagagcaagatcct 219
>gb|AC161050.2| Mus musculus BAC clone RP23-477C12 from chromosome 12, complete sequence Length = 197084 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 ttagaagaaagagatgcagaagtc 309 |||||||||||||||||| ||||| Sbjct: 193565 ttagaagaaagagatgcaaaagtc 193542
>gb|AY190704.1| Pagrus major heat shock protein 90 beta mRNA, partial cds Length = 1784 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 311 ctgcagcagagcaagatcct 330
>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome Length = 1545895 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 tatttgcagaaacaagcaat 439 |||||||||||||||||||| Sbjct: 801378 tatttgcagaaacaagcaat 801397
>gb|AC107795.17| Mus musculus chromosome 1, clone RP23-433P9, complete sequence Length = 216501 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 ttggccattggtttttgatt 174 |||||||||||||||||||| Sbjct: 114265 ttggccattggtttttgatt 114284
>gb|AC158619.12| Mus musculus 10 BAC RP23-291O3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 250421 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ttttgattgaggctcacagt 186 |||||||||||||||||||| Sbjct: 38433 ttttgattgaggctcacagt 38452
>gb|AC129288.3| Mus musculus BAC clone RP24-481M4 from chromosome 1, complete sequence Length = 179082 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 tttattgttgtaggcttttc 243 |||||||||||||||||||| Sbjct: 87758 tttattgttgtaggcttttc 87777
>gb|AC153510.10| Mus musculus 10 BAC RP23-151C4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 197889 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ttttgattgaggctcacagt 186 |||||||||||||||||||| Sbjct: 103557 ttttgattgaggctcacagt 103576
>gb|AF465639.1| Mus musculus strain C57BL/6 heat shock protein 84b (Hsp84b) mRNA, complete cds Length = 2525 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 1278 ctgcagcagagcaagatcct 1297
>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12 Length = 333800 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ctctcgcgcgcctcgccgcc 97 |||||||||||||||||||| Sbjct: 180234 ctctcgcgcgcctcgccgcc 180253
>gb|AC157800.9| Mus musculus chromosome 1, clone RP24-286C21, complete sequence Length = 164708 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 ttggccattggtttttgatt 174 |||||||||||||||||||| Sbjct: 152815 ttggccattggtttttgatt 152796
>gb|BC054457.1| Mus musculus cDNA clone IMAGE:6493938, **** WARNING: chimeric clone **** Length = 1185 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 711 ctgcagcagagcaagatcct 730
>ref|NM_001030484.1| Xenopus tropicalis heat shock 90kDa protein beta (hsp90beta), mRNA Length = 3040 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 1226 ctgcagcagagcaagatcct 1245
>gb|BC090610.1| Xenopus tropicalis heat shock 90kDa protein beta, mRNA (cDNA clone MGC:69447 IMAGE:5335884), complete cds Length = 3040 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 1226 ctgcagcagagcaagatcct 1245
>gb|BC088985.1| Mus musculus heat shock protein 90kDa alpha (cytosolic), class B member 1, mRNA (cDNA clone MGC:115780 IMAGE:6808699), complete cds Length = 2520 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 1272 ctgcagcagagcaagatcct 1291
>gb|BC049951.1| Mus musculus heat shock protein 90kDa alpha (cytosolic), class B member 1, mRNA (cDNA clone IMAGE:4163314), partial cds Length = 1355 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 100 ctgcagcagagcaagatcct 119
>gb|BC044888.1| Mus musculus heat shock protein 90kDa alpha (cytosolic), class B member 1, mRNA (cDNA clone IMAGE:3588159), partial cds Length = 1376 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 146 ctgcagcagagcaagatcct 165
>ref|NM_008302.2| Mus musculus heat shock protein 90kDa alpha (cytosolic), class B member 1 (Hsp90ab1), mRNA Length = 2525 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 1278 ctgcagcagagcaagatcct 1297
>emb|AL355478.16| Human DNA sequence from clone RP11-459J23 on chromosome 13 Contains a novel gene and apseudogene similar to part of splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor) (SFRS1), complete sequence Length = 174736 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 caatactaaattcttaaagc 455 |||||||||||||||||||| Sbjct: 146199 caatactaaattcttaaagc 146218
>emb|AJ575648.1|STH575648 Streptomyces thioluteus aureothin biosynthesis gene cluster (aurABCDEFGHI genes), strain HKI-22 Length = 29132 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 tcgcgcgcctcgccgccatcgccg 104 ||||||||||||||||| |||||| Sbjct: 7848 tcgcgcgcctcgccgccctcgccg 7871
>gb|AC136964.2| Sus scrofa domestica clone RP44-154L9, complete sequence Length = 164640 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 atgtagaaggtgcaaccaaa 481 |||||||||||||||||||| Sbjct: 110971 atgtagaaggtgcaaccaaa 110952
>gb|AC163677.2| Mus musculus BAC clone RP24-86D16 from chromosome 17, complete sequence Length = 222584 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 34898 ctgcagcagagcaagatcct 34917
>gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0082N11, from chromosome 10, complete sequence Length = 127525 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cctcgccgccatcgccgttc 107 |||||||||||||||||||| Sbjct: 40100 cctcgccgccatcgccgttc 40081
>gb|BC065359.1| Danio rerio heat shock protein 90kDa alpha (cytosolic), class B member 1, mRNA (cDNA clone MGC:77433 IMAGE:6970738), complete cds Length = 2669 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 1253 ctgcagcagagcaagatcct 1272
>gb|AC091735.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0082N11, from chromosome 10, complete sequence Length = 183345 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cctcgccgccatcgccgttc 107 |||||||||||||||||||| Sbjct: 163445 cctcgccgccatcgccgttc 163426
>gb|AC094021.2| Homo sapiens chromosome 3 clone RP11-801L18, complete sequence Length = 214160 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ccccgcaacccctccgcctc 80 |||||||||||||||||||| Sbjct: 96919 ccccgcaacccctccgcctc 96900
>dbj|AK135366.1| Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820406O06 product:heat shock protein 1, beta, full insert sequence Length = 2514 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 1286 ctgcagcagagcaagatcct 1305
>dbj|AK146205.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library, clone:I730034B14 product:heat shock protein 1, beta, full insert sequence Length = 2517 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 1289 ctgcagcagagcaagatcct 1308
>dbj|AK146809.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920059K05 product:heat shock protein 1, beta, full insert sequence Length = 2480 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 1250 ctgcagcagagcaagatcct 1269
>gb|AC079240.6| Homo sapiens BAC clone RP11-808H17 from 4, complete sequence Length = 202847 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 429 aaacaagcaatactaaattcttaaagcaaaagaatg 464 ||||||| ||||||||||| ||||| ||||||||| Sbjct: 173783 aaacaagaaatactaaatttgtaaaggaaaagaatg 173818
>gb|AC079399.5| Homo sapiens BAC clone RP11-414P19 from 4, complete sequence Length = 169035 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 52 ccgcctcacccccgcaacccctcc 75 |||||||||||| ||||||||||| Sbjct: 2196 ccgcctcaccccggcaacccctcc 2219
>gb|AC092045.2| Homo sapiens chromosome 3 clone RP11-168J18, complete sequence Length = 171343 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ccccgcaacccctccgcctc 80 |||||||||||||||||||| Sbjct: 94925 ccccgcaacccctccgcctc 94944
>gb|AC159622.2| Mus musculus BAC clone RP24-289D12 from chromosome 12, complete sequence Length = 174662 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 ttagaagaaagagatgcagaagtc 309 |||||||||||||||||| ||||| Sbjct: 86183 ttagaagaaagagatgcaaaagtc 86206
>dbj|AK084097.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130091M03 product:heat shock protein, 84 kDa 1, full insert sequence Length = 2516 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 1286 ctgcagcagagcaagatcct 1305
>dbj|AK030768.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730586E07 product:heat shock protein, 84 kDa 1, full insert sequence Length = 2512 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 1284 ctgcagcagagcaagatcct 1303
>emb|AL929509.15| Zebrafish DNA sequence from clone CH211-165I22 in linkage group 1, complete sequence Length = 139628 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 ttaaagcaaaagaatgtaga 468 |||||||||||||||||||| Sbjct: 107732 ttaaagcaaaagaatgtaga 107751
>gb|DQ013311.1| Oligocottus maculosus heat shock protein 90 (Hsp90) mRNA, partial cds Length = 811 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 116 ctgcagcagagcaagatcct 135
>dbj|AB196457.1| Oncorhynchus mykiss HSP90BA mRNA for heat shock 90kDa protein 1 beta isoform a, complete cds Length = 2683 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 1234 ctgcagcagagcaagatcct 1253
>gb|AF135117.1|AF135117 Salmo salar heat shock protein hsp90 beta (hsp90 beta) mRNA, complete cds Length = 2625 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 1259 ctgcagcagagcaagatcct 1278
>gb|AY836249.1| Cryptococcus bacillisporus strain CBS8273 mini-intein (PRP8) gene, partial cds Length = 510 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 cagagcaagatccttctcct 418 |||||||||||||||||||| Sbjct: 224 cagagcaagatccttctcct 243
>gb|AY836248.1| Cryptococcus bacillisporus strain CBS7749 mini-intein (PRP8) gene, partial cds Length = 510 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 cagagcaagatccttctcct 418 |||||||||||||||||||| Sbjct: 224 cagagcaagatccttctcct 243
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 gcgcctcgccgccatcgccg 104 |||||||||||||||||||| Sbjct: 848131 gcgcctcgccgccatcgccg 848150
>gb|AY929159.1| Acanthopagrus schlegelii heat shock protein 90 mRNA, partial cds Length = 891 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 256 ctgcagcagagcaagatcct 275
>gb|U89945.1|OTU89945 Oncorhynchus tshawytscha heat shock protein hsp90 mRNA, complete cds Length = 2633 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 1347 ctgcagcagagcaagatcct 1366
>emb|BX936290.16| Zebrafish DNA sequence from clone DKEY-188L8 in linkage group 22, complete sequence Length = 79381 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 449 ttaaagcaaaagaatgtaga 468 |||||||||||||||||||| Sbjct: 730 ttaaagcaaaagaatgtaga 711
>emb|AL831726.11| Zebrafish DNA sequence from clone DKEY-49N23 in linkage group 22, complete sequence Length = 245697 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 ttaaagcaaaagaatgtaga 468 |||||||||||||||||||| Sbjct: 1271 ttaaagcaaaagaatgtaga 1290
>gb|AF068772.1|AF068772 Danio rerio heat shock protein hsp90beta mRNA, complete cds Length = 2672 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 1246 ctgcagcagagcaagatcct 1265
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 gcgcctcgccgccatcgccg 104 |||||||||||||||||||| Sbjct: 517179 gcgcctcgccgccatcgccg 517198
>gb|AC131661.4| Mus musculus BAC clone RP23-251N10 from 1, complete sequence Length = 211188 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 284 gtttagaagaaagagatgcagaag 307 |||||||||||| ||||||||||| Sbjct: 70081 gtttagaagaaacagatgcagaag 70104
>gb|AC172870.1| Brassica rapa subsp. pekinensis clone KBrH004A06, complete sequence Length = 145603 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 taaagcaaaagaatgtagaa 469 |||||||||||||||||||| Sbjct: 74163 taaagcaaaagaatgtagaa 74182
>gb|M36829.1|MUSHSP84B Mouse heat-shock protein hsp84 mRNA Length = 2499 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 1266 ctgcagcagagcaagatcct 1285
>gb|M18186.1|MUSHSP84A Mouse 84 kD heat shock protein mRNA, complete cds Length = 2509 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcagcagagcaagatcct 412 |||||||||||||||||||| Sbjct: 1277 ctgcagcagagcaagatcct 1296 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,281,020 Number of Sequences: 3902068 Number of extensions: 4281020 Number of successful extensions: 94395 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93928 Number of HSP's gapped (non-prelim): 461 length of query: 481 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 459 effective length of database: 17,147,199,772 effective search space: 7870564695348 effective search space used: 7870564695348 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
