ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd17n22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-pro... 32 1.1
2NCKX4_HUMAN (Q8NFF2) Sodium/potassium/calcium exchanger 4 precur... 30 3.2
3WRKY7_ARATH (Q9STX0) Probable WRKY transcription factor 7 (WRKY ... 30 5.4
4PARG_DROME (O46043) Poly(ADP-ribose) glycohydrolase (EC 3.2.1.143) 30 5.4
5CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22 29 7.1
6POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p... 29 7.1
7DHH1_YEAST (P39517) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)... 29 9.2
8UXUA_BURS3 (Q396Y9) Mannonate dehydratase (EC 4.2.1.8) (D-mannon... 29 9.2

>MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-protein kinase 2 (EC|
            2.7.11.1)
          Length = 1734

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 307  TKTSRSPLSQSLSQNQR*FQSRWSPRNPHALLAKTPPQGNRLGPVVALAAG 459
            T  S S L++SLS  +       SP + H+L  ++PPQG R+ P    + G
Sbjct: 1182 TSRSLSSLNRSLSSGE---SGPGSPTHSHSLSPRSPPQGYRVAPDAVHSVG 1229



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>NCKX4_HUMAN (Q8NFF2) Sodium/potassium/calcium exchanger 4 precursor|
           (Na(+)/K(+)/Ca(2+)-exchange protein 4) (Solute carrier
           family 24 member 4)
          Length = 605

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
 Frame = -1

Query: 457 PPLERPPDP----ADFLAGVSLPTARGD 386
           PP   PP+P    ADFL+  S+P ARGD
Sbjct: 379 PPQPPPPEPEPVEADFLSPFSVPEARGD 406



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>WRKY7_ARATH (Q9STX0) Probable WRKY transcription factor 7 (WRKY DNA-binding|
           protein 7)
          Length = 353

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 20/85 (23%), Positives = 37/85 (43%)
 Frame = +1

Query: 202 VNTRSRESSRLQVITRLNSSRH*ASTMNFRKFCPSTKTSRSPLSQSLSQNQR*FQSRWSP 381
           V    ++     V+T+  + ++      FR +CP+    R PLS + + NQ   ++  S 
Sbjct: 115 VEVEEKKPETSSVLTKQKTEQYHGGGSAFRVYCPTPIHRRPPLSHNNNNNQNQTKNGSSS 174

Query: 382 RNPHALLAKTPPQGNRLGPVVALAA 456
            +P  +LA   P      P   ++A
Sbjct: 175 SSP-PMLANGAPSTINFAPSPPVSA 198



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>PARG_DROME (O46043) Poly(ADP-ribose) glycohydrolase (EC 3.2.1.143)|
          Length = 768

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -1

Query: 130 STVERSSTLLRATSKASSTCTEGAARTGARLSXWNXLDTH 11
           S+VE S++    TSK SST T+     G +LS    LDTH
Sbjct: 689 SSVEISNS--STTSKTSSTATKSMGSGGRQLSLLEMLDTH 726



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>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22|
          Length = 881

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +1

Query: 214 SRESSRLQVITRLNS-SRH*ASTMNFRKFCPSTKTSRSPLSQSLSQNQR*FQSRWSPRNP 390
           SR   R + I+R  S SR  + +   R + PS   SRSP+ +S  ++    +SR      
Sbjct: 670 SRSRGRRRSISRGRSYSRSVSGSSRGRSYTPSYSRSRSPVPKSRRRSVSYSRSRSPAGRR 729

Query: 391 HALLAKTPPQ 420
            + +++TPP+
Sbjct: 730 RSSVSRTPPR 739



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>POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3032

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 26/72 (36%), Positives = 31/72 (43%)
 Frame = +2

Query: 245 RGSTLRGTEHPR*TSESSVQVRRPQGAHCRRA*ARTSDDSSHGGARGIPTRCWQRHPRKE 424
           RG  L G    R TSE S    +P+G    R      D  S G A G P R W  +  + 
Sbjct: 39  RGPRL-GVRTTRKTSERS----QPRG----RRQPIPKDRRSTGKAWGKPGRPWPLYGNEG 89

Query: 425 IGWVRWSL*RRG 460
           +GW  W L  RG
Sbjct: 90  LGWAGWLLSPRG 101



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>DHH1_YEAST (P39517) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-) (DExD/H-box|
           helicase 1)
          Length = 506

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 162 PPEPLFVEMMIAPWKEVQRYYEPPQKPHRLVQKGQHEQEQDF 37
           PP+    + M+ P  + Q+ Y PPQ P    Q+G   Q++ F
Sbjct: 456 PPQQHHPQFMVPPSHQQQQAYPPPQMPS---QQGYPPQQEHF 494



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>UXUA_BURS3 (Q396Y9) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)|
          Length = 352

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = -2

Query: 222 FSGSCVDTV----GIAGPGW*SSHPPEPLFVEMMIAPWKEV 112
           FS   VD +    GIA PGW SS+ PE L  + ++A +++V
Sbjct: 127 FSTDAVDRIDPDDGIALPGWDSSYQPEQL--KALLAEYRDV 165


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,527,960
Number of Sequences: 219361
Number of extensions: 1447680
Number of successful extensions: 4402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4402
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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