ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd18a22 |
|---|---|
| Clone Library Name | barley_pub |
>RS9_DICDI (P14132) 40S ribosomal protein S9 (40S ribosomal protein 1024)| (Vegetative-specific protein V12) Length = 185 Score = 106 bits (265), Expect(2) = 6e-26 Identities = 49/69 (71%), Positives = 60/69 (86%) Frame = +3 Query: 66 NYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKN 245 NY KT PRRP+EKER+DAELK+VGE+GL+ K E+WRVQYAL++IR AAR LL LDEK+ Sbjct: 4 NYSKTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKD 63 Query: 246 PRRIFEGAA 272 P+RIFEG+A Sbjct: 64 PKRIFEGSA 72 Score = 28.5 bits (62), Expect(2) = 6e-26 Identities = 11/24 (45%), Positives = 19/24 (79%) Frame = +1 Query: 274 LLRXMNRYGLLAEGQDKLDYVLAL 345 LLR +++ G++ E ++KLDY+L L Sbjct: 73 LLRRLHKLGVMEESKNKLDYILNL 96
>RS9_PODAN (P52810) 40S ribosomal protein S9 (S7)| Length = 190 Score = 103 bits (256), Expect(2) = 2e-25 Identities = 50/70 (71%), Positives = 58/70 (82%) Frame = +3 Query: 63 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 242 R+Y KT K PRRP+E RLD+ELKLVGEYGLR KRE+WRV LS+IR AAR LLTLDEK Sbjct: 4 RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEK 63 Query: 243 NPRRIFEGAA 272 +P+R+FEG A Sbjct: 64 DPKRLFEGNA 73 Score = 30.0 bits (66), Expect(2) = 2e-25 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = +1 Query: 274 LLRXMNRYGLLAEGQDKLDYVLALTA 351 L+R + R G+L E + KLDYVLAL A Sbjct: 74 LIRRLVRVGVLDESRMKLDYVLALKA 99
>RS9_TRYBB (P17959) Probable 40S ribosomal protein S9| Length = 190 Score = 100 bits (248), Expect(2) = 3e-25 Identities = 44/71 (61%), Positives = 56/71 (78%) Frame = +3 Query: 60 YRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDE 239 Y N+ + +K PRRP+EKERLD E+KL G+YGLRCKRE+WRV LS++R AR LLTL E Sbjct: 4 YNNFNRVWKAPRRPFEKERLDREMKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTLPE 63 Query: 240 KNPRRIFEGAA 272 +PRR+ EG+A Sbjct: 64 NHPRRLLEGSA 74 Score = 32.7 bits (73), Expect(2) = 3e-25 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = +1 Query: 247 PAVSLRVQLLLRXMNRYGLLAEGQDKLDYVLALT 348 P L ++R + YG L E +DKLDYVL+LT Sbjct: 66 PRRLLEGSAIMRRCHGYGFLDEDKDKLDYVLSLT 99
>RS9_RAT (P29314) 40S ribosomal protein S9| Length = 193 Score = 102 bits (253), Expect(2) = 5e-25 Identities = 47/66 (71%), Positives = 57/66 (86%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 254 KT+ PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR AAR LLTLDEK+PRR Sbjct: 10 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 69 Query: 255 IFEGAA 272 +FEG A Sbjct: 70 LFEGNA 75 Score = 30.0 bits (66), Expect(2) = 5e-25 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = +1 Query: 274 LLRXMNRYGLLAEGQDKLDYVLAL 345 LLR + R G+L EG+ KLDY+L L Sbjct: 76 LLRRLVRIGVLDEGKMKLDYILGL 99
>RS9_MOUSE (Q6ZWN5) 40S ribosomal protein S9| Length = 193 Score = 102 bits (253), Expect(2) = 5e-25 Identities = 47/66 (71%), Positives = 57/66 (86%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 254 KT+ PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR AAR LLTLDEK+PRR Sbjct: 10 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 69 Query: 255 IFEGAA 272 +FEG A Sbjct: 70 LFEGNA 75 Score = 30.0 bits (66), Expect(2) = 5e-25 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = +1 Query: 274 LLRXMNRYGLLAEGQDKLDYVLAL 345 LLR + R G+L EG+ KLDY+L L Sbjct: 76 LLRRLVRIGVLDEGKMKLDYILGL 99
>RS9_HUMAN (P46781) 40S ribosomal protein S9| Length = 193 Score = 102 bits (253), Expect(2) = 5e-25 Identities = 47/66 (71%), Positives = 57/66 (86%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 254 KT+ PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR AAR LLTLDEK+PRR Sbjct: 10 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 69 Query: 255 IFEGAA 272 +FEG A Sbjct: 70 LFEGNA 75 Score = 30.0 bits (66), Expect(2) = 5e-25 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = +1 Query: 274 LLRXMNRYGLLAEGQDKLDYVLAL 345 LLR + R G+L EG+ KLDY+L L Sbjct: 76 LLRRLVRIGVLDEGKMKLDYILGL 99
>RS9_PIG (Q29197) 40S ribosomal protein S9 (Fragment)| Length = 130 Score = 102 bits (253), Expect(2) = 5e-25 Identities = 47/66 (71%), Positives = 57/66 (86%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 254 KT+ PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR AAR LLTLDEK+PRR Sbjct: 9 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 68 Query: 255 IFEGAA 272 +FEG A Sbjct: 69 LFEGNA 74 Score = 30.0 bits (66), Expect(2) = 5e-25 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = +1 Query: 274 LLRXMNRYGLLAEGQDKLDYVLAL 345 LLR + R G+L EG+ KLDY+L L Sbjct: 75 LLRRLVRIGVLDEGKMKLDYILGL 98
>RS9_DROME (P55935) 40S ribosomal protein S9| Length = 195 Score = 101 bits (251), Expect(2) = 3e-24 Identities = 46/68 (67%), Positives = 58/68 (85%) Frame = +3 Query: 69 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNP 248 + KT+ PRRPYEK RLD ELK++GEYGLR KRE+WRV+YAL++IR AAR LLTLDEK+ Sbjct: 10 FSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDE 69 Query: 249 RRIFEGAA 272 +R+F+G A Sbjct: 70 KRLFQGNA 77 Score = 28.1 bits (61), Expect(2) = 3e-24 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = +1 Query: 274 LLRXMNRYGLLAEGQDKLDYVLAL 345 LLR + R G+L E + KLDYVL L Sbjct: 78 LLRRLVRIGVLDESRMKLDYVLGL 101
>RS9B_SCHPO (O59675) 40S ribosomal protein S9-B| Length = 191 Score = 100 bits (249), Expect(2) = 4e-24 Identities = 48/70 (68%), Positives = 55/70 (78%) Frame = +3 Query: 63 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 242 R KT+K PRRP+E RLDAELKL GEYGLR K E+WRV LS+IR AAR LLTLDEK Sbjct: 5 RKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEK 64 Query: 243 NPRRIFEGAA 272 +P+R+FEG A Sbjct: 65 DPKRLFEGNA 74 Score = 28.5 bits (62), Expect(2) = 4e-24 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = +1 Query: 274 LLRXMNRYGLLAEGQDKLDYVLAL 345 ++R + R G+L E + KLDYVLAL Sbjct: 75 IIRRLVRLGILDESRMKLDYVLAL 98
>RS9A_SCHPO (Q09757) 40S ribosomal protein S9-A| Length = 190 Score = 100 bits (249), Expect(2) = 7e-24 Identities = 48/70 (68%), Positives = 55/70 (78%) Frame = +3 Query: 63 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 242 R KT+K PRRP+E RLDAELKL GEYGLR K E+WRV LS+IR AAR LLTLDEK Sbjct: 5 RKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEK 64 Query: 243 NPRRIFEGAA 272 +P+R+FEG A Sbjct: 65 DPKRLFEGNA 74 Score = 27.7 bits (60), Expect(2) = 7e-24 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = +1 Query: 274 LLRXMNRYGLLAEGQDKLDYVLAL 345 ++R + R G+L E + KLDYVLAL Sbjct: 75 IIRRLVRLGILDETRMKLDYVLAL 98
>RS9B_YEAST (P05755) 40S ribosomal protein S9-B (S13) (YS11) (RP21) (YP28)| Length = 194 Score = 97.1 bits (240), Expect(2) = 1e-23 Identities = 44/70 (62%), Positives = 56/70 (80%) Frame = +3 Query: 63 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 242 R Y KT+ P+RPYE RLDAELKL GE+GL+ KRE++R+ + LS+IR AAR LLT DEK Sbjct: 5 RTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKREIYRISFQLSKIRRAARDLLTRDEK 64 Query: 243 NPRRIFEGAA 272 +P+R+FEG A Sbjct: 65 DPKRLFEGNA 74 Score = 30.4 bits (67), Expect(2) = 1e-23 Identities = 14/24 (58%), Positives = 19/24 (79%) Frame = +1 Query: 274 LLRXMNRYGLLAEGQDKLDYVLAL 345 L+R + R G+L+E + KLDYVLAL Sbjct: 75 LIRRLVRVGVLSEDKKKLDYVLAL 98
>RS9A_YEAST (O13516) 40S ribosomal protein S9-A (S13) (YS11) (RP21) (YP28)| Length = 196 Score = 95.9 bits (237), Expect(2) = 3e-23 Identities = 43/70 (61%), Positives = 56/70 (80%) Frame = +3 Query: 63 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 242 R Y KT+ P+RPYE RLDAELKL GE+GL+ K+E++R+ + LS+IR AAR LLT DEK Sbjct: 5 RTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEK 64 Query: 243 NPRRIFEGAA 272 +P+R+FEG A Sbjct: 65 DPKRLFEGNA 74 Score = 30.4 bits (67), Expect(2) = 3e-23 Identities = 14/24 (58%), Positives = 19/24 (79%) Frame = +1 Query: 274 LLRXMNRYGLLAEGQDKLDYVLAL 345 L+R + R G+L+E + KLDYVLAL Sbjct: 75 LIRRLVRVGVLSEDKKKLDYVLAL 98
>RS9_NAEFO (Q25555) 40S ribosomal protein S9| Length = 186 Score = 91.7 bits (226), Expect(2) = 3e-22 Identities = 44/77 (57%), Positives = 56/77 (72%) Frame = +3 Query: 42 MVHVNFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARH 221 MV YR + K PRRP+EKER+D ELK+ G+YGL+ K+E+WR+QY L+R R ARH Sbjct: 1 MVQNRCYRVHSKVSLPPRRPFEKERMDRELKMCGKYGLKNKQEIWRLQYYLARARKTARH 60 Query: 222 LLTLDEKNPRRIFEGAA 272 LLTL E + +R FEGAA Sbjct: 61 LLTLPEDDMKRQFEGAA 77 Score = 31.2 bits (69), Expect(2) = 3e-22 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = +1 Query: 274 LLRXMNRYGLLAEGQDKLDYVLAL 345 LLR M R GLL E + +LDY+L+L Sbjct: 78 LLRRMTRLGLLDESKQQLDYILSL 101
>RS9_CAEEL (Q20228) 40S ribosomal protein S9| Length = 189 Score = 95.5 bits (236), Expect(2) = 6e-22 Identities = 42/66 (63%), Positives = 56/66 (84%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 254 K K PRRP+EKERLD ELKL+G +GL+ KRE+WRV+Y L+++R AAR LLTL++K+P+R Sbjct: 10 KVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKR 69 Query: 255 IFEGAA 272 +FEG A Sbjct: 70 LFEGNA 75 Score = 26.2 bits (56), Expect(2) = 6e-22 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = +1 Query: 274 LLRXMNRYGLLAEGQDKLDYVLAL 345 LLR + + G+L E + KLDYVL L Sbjct: 76 LLRRLVKIGVLDETKMKLDYVLGL 99
>RS9_ENTHI (O15612) 40S ribosomal protein S9 (Fragment)| Length = 144 Score = 81.3 bits (199), Expect(2) = 4e-18 Identities = 37/70 (52%), Positives = 52/70 (74%) Frame = +3 Query: 63 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 242 RN+ T+K P+ PYE+ER DAELKLVG++GL+ K+E+ RV Y L +R A+ +L D K Sbjct: 2 RNHSITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAK 61 Query: 243 NPRRIFEGAA 272 +P+R+ EGAA Sbjct: 62 DPKRLLEGAA 71 Score = 27.7 bits (60), Expect(2) = 4e-18 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = +1 Query: 274 LLRXMNRYGLLAEGQDKLDYVLAL 345 LLR ++ G+L Q+KL++VLAL Sbjct: 72 LLRRLHNLGILPRDQNKLEFVLAL 95
>RS4_METBF (Q46GC8) 30S ribosomal protein S4P| Length = 216 Score = 57.0 bits (136), Expect = 1e-08 Identities = 29/74 (39%), Positives = 43/74 (58%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 254 K+F+ PR P+++ R+ +E++LV YGLR KRE+W+ L R+ AR LL + R Sbjct: 9 KSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQER 68 Query: 255 IFEGAASSSSHEPL 296 EG + S E L Sbjct: 69 GLEGHQKTQSEEIL 82
>RS4_THEVO (Q97B95) 30S ribosomal protein S4P| Length = 200 Score = 57.0 bits (136), Expect = 1e-08 Identities = 25/50 (50%), Positives = 37/50 (74%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHL 224 K + PR P+EK+R+D E K++ +YGL+ KRE+WR + LS IR+ AR+L Sbjct: 9 KKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYL 58
>RS4_THEAC (Q9HJD7) 30S ribosomal protein S4P| Length = 199 Score = 57.0 bits (136), Expect = 1e-08 Identities = 26/50 (52%), Positives = 36/50 (72%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHL 224 K + PR P+EKER+D E K+V +YGL+ K+E+WR + LS IR+ AR L Sbjct: 9 KKYSTPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDL 58
>RS4_PICTO (Q6KZP7) 30S ribosomal protein S4P| Length = 183 Score = 56.6 bits (135), Expect = 1e-08 Identities = 26/50 (52%), Positives = 35/50 (70%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHL 224 K + PR P+EK+R+DAE +L+ +YGL+ KRELWR Q L+ R AR L Sbjct: 9 KKYSTPRHPWEKDRIDAERQLLIKYGLKNKRELWRAQTILTNFRTQARTL 58
>RS4_METKA (Q8TVC0) 30S ribosomal protein S4P| Length = 186 Score = 55.8 bits (133), Expect = 2e-08 Identities = 27/60 (45%), Positives = 38/60 (63%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 254 K ++ PR P+E ERL+ E KL+ +YGLR K+ELWR Q L R R A+ L+ + +R Sbjct: 9 KKYETPRHPWEAERLEYERKLMRKYGLRRKKELWRHQTQLKRWRERAKELMARTDPEAQR 68
>RS4_ARCFU (O28000) 30S ribosomal protein S4P| Length = 172 Score = 55.1 bits (131), Expect = 4e-08 Identities = 26/55 (47%), Positives = 36/55 (65%) Frame = +3 Query: 63 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLL 227 + + K + P P++K RL+ E++LV +YGLR KRELWR Q L + R AR LL Sbjct: 5 KRHRKKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLL 59
>RS4_METJA (P54020) 30S ribosomal protein S4P| Length = 187 Score = 53.5 bits (127), Expect = 1e-07 Identities = 23/56 (41%), Positives = 37/56 (66%) Frame = +3 Query: 63 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLT 230 R + KT++ P P+ KER++ E +L +YGLR KRE+W+ + L + R AR L++ Sbjct: 6 RRFKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS 61
>RS4_AERPE (Q9YB58) 30S ribosomal protein S4P| Length = 171 Score = 53.5 bits (127), Expect = 1e-07 Identities = 25/53 (47%), Positives = 36/53 (67%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTL 233 K ++ P+ P+ KERL+ E +L+G YGLR K+ELW+ + R R+ AR LL L Sbjct: 9 KKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGL 61
>RS4_SULSO (P95987) 30S ribosomal protein S4P| Length = 181 Score = 50.8 bits (120), Expect = 8e-07 Identities = 24/53 (45%), Positives = 35/53 (66%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTL 233 K ++ P P+ KER+ E +L+G+YGLR KRE+W Q + + R+ AR LL L Sbjct: 9 KKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLAL 61
>RS4_METMA (Q8PV18) 30S ribosomal protein S4P| Length = 219 Score = 49.3 bits (116), Expect = 2e-06 Identities = 22/51 (43%), Positives = 35/51 (68%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLL 227 K+++ PR P+++ R+ AE++LV YGLR K+E+W+ L R+ AR LL Sbjct: 9 KSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLL 59
>RS4_HALMA (Q00862) 30S ribosomal protein S4P (HmaS4)| Length = 171 Score = 49.3 bits (116), Expect = 2e-06 Identities = 23/51 (45%), Positives = 30/51 (58%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLL 227 K ++ P P++ ER+ E L+G YGL+ K ELWR Q L R AR LL Sbjct: 8 KFYETPNHPFQGERIADEANLIGRYGLKNKEELWRAQSELRGYRREARKLL 58
>RS4_METMP (Q6LXN0) 30S ribosomal protein S4P| Length = 178 Score = 43.5 bits (101), Expect(2) = 6e-06 Identities = 20/56 (35%), Positives = 32/56 (57%) Frame = +3 Query: 63 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLT 230 R GK + P P+ ER+ E ++ +YGL K+ELW+++ L R AR L++ Sbjct: 5 RRLGKKYDTPNHPWIGERIQKEKEISQKYGLVNKKELWKMETQLRNYRRQARKLIS 60 Score = 23.9 bits (50), Expect(2) = 6e-06 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +1 Query: 274 LLRXMNRYGLLAEGQDKLDYVLAL 345 L + RY +L E + LD+VL+L Sbjct: 73 LFNVLKRYAILIEEEPTLDHVLSL 96
>RS4_METAC (Q8TRR1) 30S ribosomal protein S4P| Length = 218 Score = 47.8 bits (112), Expect = 7e-06 Identities = 25/74 (33%), Positives = 40/74 (54%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 254 K+++ P+ P+++ R+ E++LV YGLR K+E+W+ L R+ AR LL Sbjct: 9 KSYETPKHPWQEARMATEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAHVASGQEG 68 Query: 255 IFEGAASSSSHEPL 296 EG + S E L Sbjct: 69 GLEGHYRTQSEEIL 82
>RS4_HALSA (Q9HQJ6) 30S ribosomal protein S4P| Length = 170 Score = 47.8 bits (112), Expect = 7e-06 Identities = 23/51 (45%), Positives = 29/51 (56%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLL 227 K ++ P PY+ ER+ E L+ YGL+ K ELWR Q L R AR LL Sbjct: 9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL 59
>RS4_PYRAE (Q8ZTV1) 30S ribosomal protein S4P| Length = 159 Score = 47.4 bits (111), Expect = 9e-06 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 2/56 (3%) Frame = +3 Query: 87 KPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLL--TLDEKNP 248 KP++ + K+ L EL+L+GEYGLR K+ELW + L I AR LL T +E+ P Sbjct: 15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAP 70
>RS4_METTH (O26142) 30S ribosomal protein S4P| Length = 171 Score = 46.6 bits (109), Expect = 2e-05 Identities = 21/55 (38%), Positives = 33/55 (60%) Frame = +3 Query: 63 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLL 227 R K + P P+ ER+ E +LV +YGL+ K+E+W+ + + R R AR+LL Sbjct: 5 RKARKKYDTPPHPWNAERIKEENRLVAKYGLKNKKEVWKAETMVRRYRRDARYLL 59
>RS4_SULTO (Q96YV8) 30S ribosomal protein S4P| Length = 177 Score = 46.2 bits (108), Expect = 2e-05 Identities = 22/53 (41%), Positives = 33/53 (62%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTL 233 + ++ P P+ + L+ E L+G+YGLR KRELW Q + + R+ AR LL L Sbjct: 9 RKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLAL 61
>RS4_PYRKO (Q5JJF2) 30S ribosomal protein S4P| Length = 180 Score = 45.8 bits (107), Expect = 3e-05 Identities = 23/51 (45%), Positives = 29/51 (56%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLL 227 K ++ P P+ KERLD E L Y L+ K+ELWR + L R AR LL Sbjct: 9 KKYETPSHPWIKERLDRERVLKRNYALKNKKELWRHETQLKEFRRRARRLL 59
>RS4_PYRHO (O59306) 30S ribosomal protein S4P| Length = 180 Score = 45.4 bits (106), Expect = 3e-05 Identities = 22/51 (43%), Positives = 31/51 (60%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLL 227 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLL 59
>RS4_PYRFU (P61993) 30S ribosomal protein S4P| Length = 180 Score = 45.4 bits (106), Expect = 3e-05 Identities = 22/51 (43%), Positives = 31/51 (60%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLL 227 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLL 59
>RS4_PYRAB (P61992) 30S ribosomal protein S4P| Length = 180 Score = 45.4 bits (106), Expect = 3e-05 Identities = 22/51 (43%), Positives = 31/51 (60%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLL 227 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLL 59
>RS4_SULAC (P39467) 30S ribosomal protein S4P| Length = 176 Score = 44.3 bits (103), Expect = 8e-05 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Frame = +3 Query: 63 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLD-- 236 R K + P P+ K L E L+G+YGLR K+E+W Q + R+ AR LL L Sbjct: 5 RKSKKKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPA 64 Query: 237 EKNPR 251 E+N R Sbjct: 65 ERNIR 69
>RS4_NATPD (Q3IQT8) 30S ribosomal protein S4P| Length = 174 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/51 (41%), Positives = 28/51 (54%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLL 227 K ++ P P++ ER+ E L+ YGL K ELWR Q L R AR L+ Sbjct: 8 KFYETPNHPFQGERIAEEGDLLSRYGLVNKEELWRAQSELRDYRREARRLI 58
>RS4_NANEQ (Q74NF7) 30S ribosomal protein S4P| Length = 180 Score = 42.4 bits (98), Expect = 3e-04 Identities = 20/50 (40%), Positives = 32/50 (64%) Frame = +3 Query: 75 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHL 224 + ++ P P++K+RL E +L+ EYGL+ KRELW + + R AR+L Sbjct: 6 RKWEGPSHPWQKQRLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYL 55
>GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10 precursor| Length = 648 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = -1 Query: 352 QQSGQGRNQACPGPQQGAHSGSXDEEEAAPSKIRRGFFSSSVSK 221 QQ+GQ + PG Q G E+E P + ++G++ +S+ + Sbjct: 381 QQTGQPGQKQQPGQGQQTGQGQQPEQEQQPGQGQQGYYPTSLQQ 424
>HBT1_YEAST (Q07653) Protein HBT1 (HUB1 target protein 1)| Length = 1046 Score = 28.1 bits (61), Expect = 5.6 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Frame = -2 Query: 288 HXTKKKLHPQRYG--GDSSHPV*ASALQHYGSCSMHTGPSRAHACTSVHTHPPALVLHPD 115 H K HP +G G S+ P +A Q + S T PS H TSV + A + + Sbjct: 241 HINVKTTHPVSHGHSGSSTGPKSTAAAQDHSSTK--TNPSVTHGHTSVKDNSSATKGYSN 298 Query: 114 APSHRD 97 S+ D Sbjct: 299 TDSNSD 304
>PCSK9_HUMAN (Q8NBP7) Proprotein convertase subtilisin/kexin type 9 precursor| (EC 3.4.21.-) (Proprotein convertase PC9) (Subtilisin/kexin-like protease PC9) (Neural apoptosis-regulated convertase 1) (NARC-1) Length = 692 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Frame = -2 Query: 255 YGGDSSHPV*ASALQHYGSCSMHTG-PSRAHACTSVHTHPPALVL 124 +GG+ + + L +CS+HT P+ A T VH H VL Sbjct: 515 FGGEGVYAIARCCLLPQANCSVHTAPPAEASMGTRVHCHQQGHVL 559
>GLT3_WHEAT (P08488) Glutenin, high molecular weight subunit 12 precursor| Length = 660 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = -1 Query: 352 QQSGQGRNQACPGPQQGAHSGSXDEEEAAPSKIRRGFFSSS 230 QQ GQG+ Q PG +Q G E+ P + ++G++ +S Sbjct: 469 QQPGQGQGQ--PGQRQQPGQGQHPEQGQQPGQGQQGYYPTS 507 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = -1 Query: 352 QQSGQGRNQACPGPQQGAHSGSXDEEEAAPSKIRRGFFSSSVSK 221 QQ GQ + PG Q G E+E P + ++G++ +S+ + Sbjct: 391 QQIGQPGQKQQPGQGQQTGQGQQPEQEQQPGQGQQGYYPTSLQQ 434
>GLNA2_HORVU (P13564) Glutamine synthetase leaf isozyme, chloroplast precursor| (EC 6.3.1.2) (Glutamate--ammonia ligase) (Chloroplast GS2) Length = 434 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = +3 Query: 150 GLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRRIFEGAASSSSHEPL 296 G+ +W +Y L RI A +LTLD K + + GA +++ L Sbjct: 269 GIDAGDHIWASRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTL 317
>HXD9_HUMAN (P28356) Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2)| Length = 342 Score = 27.3 bits (59), Expect = 9.5 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = -1 Query: 343 GQGRNQACPGPQQGAHSGSXDEEEAAPSKIRRGFFSSSVSKCLAA 209 G+G + GP G H G E AAP+ +SS S L++ Sbjct: 132 GRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSS 176
>MYO10_BOVIN (P79114) Myosin-10 (Myosin X)| Length = 2052 Score = 27.3 bits (59), Expect = 9.5 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +3 Query: 84 KKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHL 224 ++ R E+ER +AEL+ E R +REL +Q R +R L Sbjct: 833 EEEERERERERREAELRAQQEEAARKQRELEALQQESQRAAELSREL 879
>FLNB_MOUSE (Q80X90) Filamin-B (FLN-B) (Beta-filamin) (Actin-binding-like| protein) (ABP-280-like protein) Length = 2602 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -3 Query: 227 EQVPCSITDPAQCILDPPELTLAPQSIL 144 E+ C+I +PA+ I+DP + AP IL Sbjct: 656 EKSGCTINNPAEFIVDPKDAGSAPLKIL 683
>ARTE_ARATH (Q9FYL3) Protein ARTEMIS, chloroplast precursor (Arabidopsis| thaliana envelope membrane integrase) (Ath4) (ALBINO3-like protein 1) Length = 1013 Score = 27.3 bits (59), Expect = 9.5 Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 2/36 (5%) Frame = +3 Query: 75 KTFKKPRRPYEKE--RLDAELKLVGEYGLRCKRELW 176 K F KPRR E E E K EYG R E W Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECW 514
>WCAA_ECOLI (P77414) Putative colanic acid biosynthesis glycosyl transferase| wcaA Length = 279 Score = 27.3 bits (59), Expect = 9.5 Identities = 16/57 (28%), Positives = 24/57 (42%) Frame = +3 Query: 48 HVNFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAAR 218 + +FYR + F + + Y+ L Y +R KR WR L +RN R Sbjct: 224 YFHFYRKHKDKFDRASKKYQLFTL---------YQIRNKRMTWRTLLTLLSVRNGKR 271
>O10Q1_HUMAN (Q8NGQ4) Olfactory receptor 10Q1| Length = 319 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -3 Query: 179 PPELTLAPQSILTHQL*FCIQTLLLIGTPWFLECLTIVAV 60 PP L LA I HQ + ++L++ P+ L C++ V + Sbjct: 187 PPVLRLACADIRVHQAVLYVVSILVLTIPFLLICVSYVFI 226
>GLYA_PICTO (Q6L1F6) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 433 Score = 27.3 bits (59), Expect = 9.5 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Frame = -1 Query: 331 NQACPGPQQGAHSGSXDEEEAAPSKIRRGFFSSSVS----KCLAALRILL 194 ++ PGPQ G G+ D++ K++RG F ++S +AAL + L Sbjct: 230 HKTLPGPQHGMIIGNTDDD--TWKKVQRGVFPGTLSNHHLNAMAALGVTL 277 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,022,652 Number of Sequences: 219361 Number of extensions: 895149 Number of successful extensions: 2728 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 2604 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2712 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
