ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd18a21 |
|---|---|
| Clone Library Name | barley_pub |
>SSRP1_CATRO (Q39601) Structure-specific recognition protein 1 homolog (HMG| protein) Length = 639 Score = 227 bits (578), Expect = 2e-59 Identities = 105/151 (69%), Positives = 128/151 (84%) Frame = +2 Query: 74 MTDGHLFNNISLGGRVGNNPGQFRLYSGGLAWKKQGGGKTIEVDKADIVSVTWMKIPRSY 253 M DGHLFNNI+LGGR G NPGQ R++SGG+ WKKQGG K +EVDK+D+V +TWMK+PRS Sbjct: 1 MADGHLFNNITLGGRGGTNPGQLRVHSGGILWKKQGGAKAVEVDKSDMVGLTWMKVPRSN 60 Query: 254 QLSVGTKEGIRYVFKGFREQDVSNLTNFIQKNTGTTPEEKQLSVSGHNWGAVDINGNMLS 433 QL V K+G+ Y F GFR+QDV++LT+++Q G TPEEKQLSVSG NWG VD+NGNML+ Sbjct: 61 QLGVRIKDGLFYKFTGFRDQDVASLTSYLQSTCGITPEEKQLSVSGKNWGEVDLNGNMLT 120 Query: 434 FNVGSKEAFEVSLSDVSQTQLQGKTDVVLEF 526 F VGSK+AFEVSL+DV+QTQLQGK DV+LEF Sbjct: 121 FLVGSKQAFEVSLADVAQTQLQGKNDVMLEF 151
>SSRP1_ARATH (Q05153) Structure-specific recognition protein 1 homolog (HMG| protein) Length = 646 Score = 225 bits (573), Expect = 7e-59 Identities = 106/158 (67%), Positives = 128/158 (81%) Frame = +2 Query: 74 MTDGHLFNNISLGGRVGNNPGQFRLYSGGLAWKKQGGGKTIEVDKADIVSVTWMKIPRSY 253 M DGH FNNISL GR G NPG ++ SGG+ WKKQGGGK +EVD++DIVSV+W K+ +S Sbjct: 1 MADGHSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVDRSDIVSVSWTKVTKSN 60 Query: 254 QLSVGTKEGIRYVFKGFREQDVSNLTNFIQKNTGTTPEEKQLSVSGHNWGAVDINGNMLS 433 QL V TK+G+ Y F GFR+QDV +L++F Q + G TP+EKQLSVSG NWG VD++GN L+ Sbjct: 61 QLGVKTKDGLYYKFVGFRDQDVPSLSSFFQSSYGKTPDEKQLSVSGRNWGEVDLHGNTLT 120 Query: 434 FNVGSKEAFEVSLSDVSQTQLQGKTDVVLEFHVDDTTG 547 F VGSK+AFEVSL+DVSQTQLQGK DV LEFHVDDT G Sbjct: 121 FLVGSKQAFEVSLADVSQTQLQGKNDVTLEFHVDDTAG 158
>SSRP1_RAT (Q04931) Structure-specific recognition protein 1 (SSRP1)| (Recombination signal sequence recognition protein) (T160) Length = 709 Score = 96.7 bits (239), Expect = 4e-20 Identities = 52/149 (34%), Positives = 78/149 (52%) Frame = +2 Query: 92 FNNISLGGRVGNNPGQFRLYSGGLAWKKQGGGKTIEVDKADIVSVTWMKIPRSYQLSVGT 271 FN+I + N G+ RL G+ +K GK + ++ W ++ + L + T Sbjct: 7 FNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLT 66 Query: 272 KEGIRYVFKGFREQDVSNLTNFIQKNTGTTPEEKQLSVSGHNWGAVDINGNMLSFNVGSK 451 K G Y + GFRE + L++F + + EK L V G NWG V G +LSF++G + Sbjct: 67 KNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQ 126 Query: 452 EAFEVSLSDVSQTQLQGKTDVVLEFHVDD 538 FE+ LS+VSQ GK +V LEFH +D Sbjct: 127 PVFEIPLSNVSQC-TTGKNEVTLEFHQND 154
>SSRP1_HUMAN (Q08945) Structure-specific recognition protein 1 (SSRP1)| (Recombination signal sequence recognition protein) (T160) (Chromatin-specific transcription elongation factor 80 kDa subunit) (FACT 80 kDa subunit) Length = 709 Score = 96.3 bits (238), Expect = 5e-20 Identities = 51/149 (34%), Positives = 78/149 (52%) Frame = +2 Query: 92 FNNISLGGRVGNNPGQFRLYSGGLAWKKQGGGKTIEVDKADIVSVTWMKIPRSYQLSVGT 271 FN++ + N G+ RL G+ +K GK + ++ W ++ + L + T Sbjct: 7 FNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLT 66 Query: 272 KEGIRYVFKGFREQDVSNLTNFIQKNTGTTPEEKQLSVSGHNWGAVDINGNMLSFNVGSK 451 K G Y + GFRE + L++F + + EK L V G NWG V G +LSF++G + Sbjct: 67 KNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQ 126 Query: 452 EAFEVSLSDVSQTQLQGKTDVVLEFHVDD 538 FE+ LS+VSQ GK +V LEFH +D Sbjct: 127 PVFEIPLSNVSQC-TTGKNEVTLEFHQND 154
>SSRP1_MOUSE (Q08943) Structure-specific recognition protein 1 (SSRP1)| (Recombination signal sequence recognition protein) (T160) Length = 708 Score = 94.0 bits (232), Expect = 2e-19 Identities = 50/149 (33%), Positives = 77/149 (51%) Frame = +2 Query: 92 FNNISLGGRVGNNPGQFRLYSGGLAWKKQGGGKTIEVDKADIVSVTWMKIPRSYQLSVGT 271 FN+I + N G+ RL G+ +K GK + ++ W ++ + L + T Sbjct: 7 FNDIFQEVKGSMNDGRLRLSPSGIIFKNSKTGKVDNIQAGELTEGIWPRVALGHGLKLLT 66 Query: 272 KEGIRYVFKGFREQDVSNLTNFIQKNTGTTPEEKQLSVSGHNWGAVDINGNMLSFNVGSK 451 K G Y + GFRE + L++F + + EK L V G NWG V G +LSF++G + Sbjct: 67 KNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQ 126 Query: 452 EAFEVSLSDVSQTQLQGKTDVVLEFHVDD 538 FE+ LS+VS Q + +V LEFH +D Sbjct: 127 PVFEIPLSNVSSVP-QARIEVTLEFHQND 154
>SSRP_DROME (Q05344) Single-strand recognition protein (SSRP) (Chorion-factor| 5) Length = 723 Score = 86.7 bits (213), Expect = 4e-17 Identities = 54/155 (34%), Positives = 80/155 (51%) Frame = +2 Query: 74 MTDGHLFNNISLGGRVGNNPGQFRLYSGGLAWKKQGGGKTIEVDKADIVSVTWMKIPRSY 253 MTD +N+I+ R G+ ++ + +K GK ++ DI + K ++ Sbjct: 1 MTDSLEYNDINAEVRGVLCSGRLKMTEQNIIFKNTKTGKVEQISAEDIDLINSQKFVGTW 60 Query: 254 QLSVGTKEGIRYVFKGFREQDVSNLTNFIQKNTGTTPEEKQLSVSGHNWGAVDINGNMLS 433 L V TK G+ + F GFR+ + L FI+ EK++ V G NWG G++LS Sbjct: 61 GLRVFTKGGVLHRFTGFRDSEHEKLGKFIKAAYSQEMVEKEMCVKGWNWGTARFMGSVLS 120 Query: 434 FNVGSKEAFEVSLSDVSQTQLQGKTDVVLEFHVDD 538 F+ SK FEV LS VSQ + GK +V LEFH +D Sbjct: 121 FDKESKTIFEVPLSHVSQC-VTGKNEVTLEFHQND 154
>SSRP1_CHICK (Q04678) Structure-specific recognition protein 1 (SSRP1)| (Recombination signal sequence recognition protein) (T160) (Fragment) Length = 669 Score = 82.8 bits (203), Expect = 6e-16 Identities = 41/113 (36%), Positives = 63/113 (55%) Frame = +2 Query: 200 VDKADIVSVTWMKIPRSYQLSVGTKEGIRYVFKGFREQDVSNLTNFIQKNTGTTPEEKQL 379 + +++ W ++ + L + TK G Y + GFRE + L++F + + EK L Sbjct: 5 IQASELAEGVWRRVALGHGLKLLTKNGHVYKYDGFRESEFDKLSDFFKAHYRLELAEKDL 64 Query: 380 SVSGHNWGAVDINGNMLSFNVGSKEAFEVSLSDVSQTQLQGKTDVVLEFHVDD 538 V G NWG V G +LSF++G + FE+ LS+VSQ GK +V LEFH +D Sbjct: 65 CVKGWNWGTVRFGGQLLSFDIGEQPVFEIPLSNVSQC-TTGKNEVTLEFHQND 116
>SSRP1_CAEEL (P41848) Probable structure-specific recognition protein 1 (SSRP1)| (Recombination signal sequence recognition protein) Length = 697 Score = 78.6 bits (192), Expect = 1e-14 Identities = 40/135 (29%), Positives = 69/135 (51%) Frame = +2 Query: 134 GQFRLYSGGLAWKKQGGGKTIEVDKADIVSVTWMKIPRSYQLSVGTKEGIRYVFKGFREQ 313 G +L L +K GGK++ V +DI + W K+ L VG +G + F GF++ Sbjct: 20 GTLKLTEKSLNFKGDKGGKSVNVTGSDIDKLKWQKLGNKPGLRVGLNDGGAHRFGGFKDT 79 Query: 314 DVSNLTNFIQKNTGTTPEEKQLSVSGHNWGAVDINGNMLSFNVGSKEAFEVSLSDVSQTQ 493 D+ + +F N + ++ L + G N+G ++ G + F+ K FE+ ++VS Sbjct: 80 DLEKIQSFTSSNWSQSIDQSNLFIKGWNYGQAEVKGKTVEFSWEDKPIFEIPCTNVSNV- 138 Query: 494 LQGKTDVVLEFHVDD 538 + K + VLEFH +D Sbjct: 139 IANKNEAVLEFHQND 153
>YMG9_YEAST (Q04636) Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic| region Length = 552 Score = 73.2 bits (178), Expect = 5e-13 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 8/143 (5%) Frame = +2 Query: 134 GQFRLYSGGLAWKKQGGG--------KTIEVDKADIVSVTWMKIPRSYQLSVGTKEGIRY 289 G+FR+ GL WK G K + ++ +V W + R Y L + TK Sbjct: 17 GRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGCRGYDLKINTKNQGVI 76 Query: 290 VFKGFREQDVSNLTNFIQKNTGTTPEEKQLSVSGHNWGAVDINGNMLSFNVGSKEAFEVS 469 GF + D + + N + E+++ S+ G NWG D+ N + F + K FE+ Sbjct: 77 QLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRGWNWGKTDLARNEMVFALNGKPTFEIP 136 Query: 470 LSDVSQTQLQGKTDVVLEFHVDD 538 + ++ T L K +V +EF++ D Sbjct: 137 YARINNTNLTSKNEVGIEFNIQD 159
>RNE_BUCAI (P57429) Ribonuclease E (EC 3.1.4.-) (RNase E)| Length = 902 Score = 32.0 bits (71), Expect = 1.2 Identities = 23/77 (29%), Positives = 34/77 (44%) Frame = +2 Query: 170 KKQGGGKTIEVDKADIVSVTWMKIPRSYQLSVGTKEGIRYVFKGFREQDVSNLTNFIQKN 349 K+Q GGKTI IV MK P + E Y G S +T+F++KN Sbjct: 464 KRQAGGKTI------IVPSKKMKTPHYSVSRIRKSESKNYTRYGLSNIRQSKITSFLKKN 517 Query: 350 TGTTPEEKQLSVSGHNW 400 +++ L V+ N+ Sbjct: 518 LLKKKQKEILDVANFNF 534
>JHEB_TRINI (P30810) Juvenile hormone esterase, isoform B (EC 3.1.1.59) (JH| esterase) (JHE-B) (Fragments) Length = 63 Score = 31.2 bits (69), Expect = 2.0 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +2 Query: 251 YQLSVGTKEGIRYVFKGFREQDVSNLTNFIQK 346 YQ VG E + YVFKG + QD+ + T + K Sbjct: 32 YQFGVGXIEXLTYVFKGSQYQDIESPTAYQSK 63
>MRE11_METKA (Q8TXI3) DNA double-strand break repair protein mre11| Length = 451 Score = 30.8 bits (68), Expect = 2.6 Identities = 18/66 (27%), Positives = 33/66 (50%) Frame = +2 Query: 173 KQGGGKTIEVDKADIVSVTWMKIPRSYQLSVGTKEGIRYVFKGFREQDVSNLTNFIQKNT 352 K+ G +E D+ +V ++++ S +LSV G R+ + R + + K+T Sbjct: 235 KRRGFFLVEFDRGGLVEYEFVEVEWSRELSVVEVSGERWEEELRRRVRRGQIVKVVAKDT 294 Query: 353 GTTPEE 370 G +PEE Sbjct: 295 GASPEE 300
>THRC_METJA (Q58860) Probable threonine synthase (EC 4.2.3.1) (TS)| Length = 405 Score = 30.4 bits (67), Expect = 3.4 Identities = 21/78 (26%), Positives = 37/78 (47%) Frame = +2 Query: 182 GGKTIEVDKADIVSVTWMKIPRSYQLSVGTKEGIRYVFKGFREQDVSNLTNFIQKNTGTT 361 G KTI + D + W ++P + VG I ++KGF+E +++ + + + K TG Sbjct: 208 GQKTIAFEICD--QLNW-QVPDRVIVPVGNAGNISAIWKGFKEFEITGIIDELPKMTGIQ 264 Query: 362 PEEKQLSVSGHNWGAVDI 415 + + V A DI Sbjct: 265 ADGAKPIVEAFRKRAKDI 282
>GATA_CAUCR (Q9A5L0) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 489 Score = 30.0 bits (66), Expect = 4.4 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Frame = +2 Query: 116 RVGNNPGQF-RLYSGGLAWKKQGGGKTIEVDKAD---IVSVTWMKIPRSYQLSVGTKEGI 283 RV N P + +L+ G+AW K+ G + +++ + ++ P ++ +G+ Sbjct: 271 RVDNMPAEIEKLWQDGIAWLKEAGCEIVDISLPHTKYALPAYYIVAPAEASSNLARYDGM 330 Query: 284 RYVFKGFREQDVSNLTNFIQKNT 352 RY G RE+ +NLT I +NT Sbjct: 331 RY---GLREEG-ANLTE-IYENT 348
>SYV_COREF (Q8FN65) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 903 Score = 29.6 bits (65), Expect = 5.8 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 1/125 (0%) Frame = +2 Query: 167 WKKQGGGKTIEVDKADIVSVTWMKIPRSYQLSVGTKEGIRYVFKGFREQDVSNLTNFIQK 346 WKK+ GGK E +A SV W + + L G ++ +FK + + N + Sbjct: 136 WKKEYGGKIGEQMRAIGDSVDWSR--ERFTLDEGLSRAVQTIFKKLYDSGMIYQANRLVN 193 Query: 347 NTGTTPEEKQLSVSGHNWGAVDINGNMLSFNVGSKEAFEVSLSDVSQTQLQGKT-DVVLE 523 + + +VS D+ G ++S GS E + V+ T+++ DV + Sbjct: 194 WSPVL----ETAVSDIEVVYKDVEGELVSIRYGSLNDDEPHVV-VATTRVETMLGDVAVA 248 Query: 524 FHVDD 538 H DD Sbjct: 249 VHPDD 253
>FIBL_BOMMO (P21828) Fibroin light chain precursor (Fib-L) (L-fibroin)| Length = 262 Score = 29.6 bits (65), Expect = 5.8 Identities = 17/43 (39%), Positives = 25/43 (58%) Frame = +2 Query: 83 GHLFNNISLGGRVGNNPGQFRLYSGGLAWKKQGGGKTIEVDKA 211 GH+ N++L ++ NPGQ R YS G A GGG+ + + A Sbjct: 131 GHVGQNLNLINQLVINPGQLR-YSVGPALGCAGGGRIYDFEAA 172
>ACON_BRAJA (P70920) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 906 Score = 29.6 bits (65), Expect = 5.8 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = +3 Query: 246 DLISLVLGPKRASGTCSKASVNR-MLVTLLTSYKRTREPHQR 368 D++ + GPKR G + SV V L YK+T EP +R Sbjct: 379 DVVPSMAGPKRPEGRIALPSVAEGFSVALANEYKKTEEPAKR 420
>Y459_MYCPN (P75324) Hypothetical lipoprotein MPN459 precursor (H08_orf591)| Length = 569 Score = 29.3 bits (64), Expect = 7.6 Identities = 25/142 (17%), Positives = 62/142 (43%), Gaps = 14/142 (9%) Frame = +2 Query: 146 LYSGGLAWKKQGGGKTIEVDKADIVSVTWMKIPRSYQLSVGTKEGIRYVFKGFREQDVSN 325 L S G+++ +Q ++ D+ W+K+ ++ Q + T Y+ +G + SN Sbjct: 428 LSSAGVSYSQQEDARSRFASTGDL---RWVKVQKTAQSAQITYSSRPYILEGETVKTNSN 484 Query: 326 LTNFIQKNTGTTPEEKQLSVSGH-----NW---------GAVDINGNMLSFNVGSKEAFE 463 +T K + E+ L++ NW + D+N +++ F + ++ + Sbjct: 485 ITETEAKFLYNSESEEALTIRAGINGLINWQNLAIILLPNSGDLNYSIVPFGIFKEKGKD 544 Query: 464 VSLSDVSQTQLQGKTDVVLEFH 529 V + + Q +D++ +++ Sbjct: 545 VQVKQKNTGQASQGSDLMNDYY 566
>SYV_PROMM (Q7TUI9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 929 Score = 29.3 bits (64), Expect = 7.6 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 6/85 (7%) Frame = +2 Query: 164 AWKKQGGGKTIEVDKADIVSVTWMKIPRSYQLSVGTKEGIRYVFKGFREQDV----SNLT 331 AWK++ GG+ ++ + SV W + + + L G +R F EQ + L Sbjct: 132 AWKEESGGRIVDQLRRLGYSVDWQR--QRFTLDEGLSAAVREAFVRLHEQGLIYRGEYLV 189 Query: 332 NFIQKNTGTTP--EEKQLSVSGHNW 400 N+ + E + V GH W Sbjct: 190 NWCPASGSAVSDLEVEMKEVDGHLW 214 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,393,568 Number of Sequences: 219361 Number of extensions: 1394429 Number of successful extensions: 4106 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3985 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4101 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
