Clone Name	basd17i12
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	ref|NM_193728.1| Oryza sativa (japonica cultivar-group), predic...	359	6e-96
2	dbj|AK102473.1| Oryza sativa (japonica cultivar-group) cDNA clon...	359	6e-96
3	dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...	226	6e-56
4	dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic D...	226	6e-56
5	gb|AF514859.1| Oryza sativa (indica cultivar-group) ATP-dependen...	218	1e-53
6	gb|AY109053.1| Zea mays PCO106983 mRNA sequence	159	1e-35
7	gb|AY107538.1| Zea mays PCO073954 mRNA sequence	105	1e-19
8	gb|AY496111.1| Capsicum annuum ClpP putative protein mRNA, parti...	54	5e-04
9	gb|L41144.1|BNACLPPA Brassica oleracea ClpP (clpP) mRNA, partial...	52	0.002
10	gb|DQ158856.1| Bigelowiella natans nucleomorph chromosome 1, par...	46	0.11
11	gb|CP000238.1| Baumannia cicadellinicola str. Hc (Homalodisca co...	46	0.11
12	gb|AY267691.1| Bigelowiella natans ClpP protease mRNA, partial c...	46	0.11
13	gb|DQ071229.1| Bigelowiella natans clone 3 clpP2 mRNA, partial s...	46	0.11
14	gb|DQ071224.1| Bigelowiella natans clone 2 clpP2 mRNA, partial s...	46	0.11
15	gb|DQ071217.1| Bigelowiella natans clone 4 clpP2 mRNA, partial s...	46	0.11
16	gb|DP000002.1| Sminthopsis macroura target 1 genomic scaffold	44	0.45
17	gb|AC123967.3| Sminthopsis macroura clone 102C13, complete sequence	44	0.45
18	gb|AE009001.1| Agrobacterium tumefaciens str. C58 circular chrom...	42	1.8
19	gb|DQ071215.1| Bigelowiella natans clpP2 mRNA, partial sequence	42	1.8
20	gb|AC093283.3| Homo sapiens chromosome 5 clone RP11-428C6, compl...	42	1.8
21	gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome	42	1.8
22	gb|AC149149.3| Xenopus tropicalis clone ISB-175F5, complete sequ...	42	1.8
23	ref|NM_123547.1| Arabidopsis thaliana protein prenyltransferase ...	40	7.0
24	ref|NM_105338.2| Arabidopsis thaliana CLPP3; endopeptidase Clp A...	40	7.0
25	ref|XM_480351.1| Oryza sativa (japonica cultivar-group), mRNA	40	7.0
26	emb|CR694080.2|CNS0FYI4 Tetraodon nigroviridis full-length cDNA	40	7.0
27	emb|CR678681.2|CNS0FMMD Tetraodon nigroviridis full-length cDNA	40	7.0
28	emb|CR678052.2|CNS0FM57 Tetraodon nigroviridis full-length cDNA	40	7.0
29	emb|CR674696.2|CNS0FJKE Tetraodon nigroviridis full-length cDNA	40	7.0
30	emb|CR671456.2|CNS0FH2E Tetraodon nigroviridis full-length cDNA	40	7.0
31	emb|CR670920.2|CNS0FGNI Tetraodon nigroviridis full-length cDNA	40	7.0
32	emb|CR669971.2|CNS0FFX5 Tetraodon nigroviridis full-length cDNA	40	7.0
33	emb|CR668522.2|CNS0FESW Tetraodon nigroviridis full-length cDNA	40	7.0
34	emb|CR665602.2|CNS0FCJS Tetraodon nigroviridis full-length cDNA	40	7.0
35	emb|CR663706.2|CNS0FB34 Tetraodon nigroviridis full-length cDNA	40	7.0
36	emb|CR662211.2|CNS0F9XL Tetraodon nigroviridis full-length cDNA	40	7.0
37	emb|CR661865.2|CNS0F9NZ Tetraodon nigroviridis full-length cDNA	40	7.0
38	gb|AC142209.3| Homo sapiens chromosome 5 clone XXyac-ICRF4X137E6...	40	7.0
39	dbj|AB190353.1| Brassica rapa BrSLGf2b, BrSLGf2a genes, complete...	40	7.0
40	gb|AC108120.3| Homo sapiens chromosome 5 clone RP11-524L6, compl...	40	7.0
41	gb|AC010240.7| Homo sapiens chromosome 5 clone CTC-350I8, comple...	40	7.0
42	gb|AY072526.1| Arabidopsis thaliana ATP-dependent Clp protease (...	40	7.0
43	gb|AC159023.4| Pan troglodytes BAC clone CH251-506L16 from chrom...	40	7.0
44	gb|AC160131.2| Mus musculus BAC clone RP23-226D9 from chromosome...	40	7.0
45	gb|AF370528.1|AF370528 Arabidopsis thaliana ATP-dependent Clp pr...	40	7.0
46	dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...	40	7.0
47	emb|BX817427.1|CNS0ACFS Arabidopsis thaliana Full-length cDNA Co...	40	7.0
48	gb|AY087349.1| Arabidopsis thaliana clone 34480 mRNA, complete s...	40	7.0
49	gb|AC159743.4| Pan troglodytes BAC clone CH251-267D14 from chrom...	40	7.0
50	dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic D...	40	7.0
51	dbj|AB016871.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...	40	7.0
52	dbj|AB022328.1| Arabidopsis thaliana mRNA for nClpP3 (nuclear en...	40	7.0
53	dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic D...	40	7.0
54	ref|XM_308493.2| Anopheles gambiae str. PEST ENSANGP00000022800 ...	40	7.0
55	gb|AF032123.1|AF032123 Arabidopsis thaliana clp protease (CLP) m...	40	7.0
56	emb|AL023580.1|HS372K1 Human DNA sequence from clone RP3-372K1 o...	40	7.0

---

>ref|NM_193728.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 954

 Score =  359 bits (181), Expect = 6e-96
 Identities = 289/325 (88%)
 Strand = Plus / Plus

                                                                       
Query: 196 ctcgaggagttggacaccagcaacatgcttctccgccagcggatcatctttctcggctcc 255
           ||||||||| ||||||||| ||||||||| || |||||||| ||| |||| |||||||||
Sbjct: 199 ctcgaggagctggacaccaccaacatgctccttcgccagcgcatcgtcttcctcggctcc 258

                                                                       
Query: 256 ccggtggatgatttgaatgcggatcttatcaccagtcaactgttactattggatgcaaag 315
           |||||||||||| ||| ||| |||||||||| ||| ||||| || ||  |||||||  ||
Sbjct: 259 ccggtggatgatatgagtgctgatcttatcatcagccaactcttgctgctggatgctgag 318

                                                                       
Query: 316 gaccacacaaaggacatcaagttgtttattaattcacccggaggctccatcactgcagga 375
           ||  | || ||||||||||| ||||||||||| ||||| ||||||||||| || ||||||
Sbjct: 319 gataaaactaaggacatcaaattgtttattaactcacctggaggctccataacagcagga 378

                                                                       
Query: 376 atggggatttatgatgccatgaaattttgcaaggctgatatctcaaccgtttgctttgga 435
           |||||  |||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct: 379 atgggagtttatgatgccatgaaattttgcaaggctgatatatcaactgtctgctttgga 438

                                                                       
Query: 436 ttggcggcttccatgggtgcatttttgttagctgctgggacaaagggaaagagattttgc 495
            |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 439 ctggcggcttccatgggtgcatttttgctagctgctgggacaaaggggaagagattttgc 498

                                    
Query: 496 atgccaaatgcgagaattatgatcc 520
           ||||| |||||||||||||||||||
Sbjct: 499 atgcctaatgcgagaattatgatcc 523



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 100 tccgctcatcggcggcggcagcccggcagacgctctcctccg 141
           ||||| |||||||| |||| || |||| ||||||||||||||
Sbjct: 104 tccgcgcatcggcgtcggcggcacggcggacgctctcctccg 145

---

>dbj|AK102473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094H09, full
           insert sequence
          Length = 1257

 Score =  359 bits (181), Expect = 6e-96
 Identities = 289/325 (88%)
 Strand = Plus / Plus

                                                                       
Query: 196 ctcgaggagttggacaccagcaacatgcttctccgccagcggatcatctttctcggctcc 255
           ||||||||| ||||||||| ||||||||| || |||||||| ||| |||| |||||||||
Sbjct: 294 ctcgaggagctggacaccaccaacatgctccttcgccagcgcatcgtcttcctcggctcc 353

                                                                       
Query: 256 ccggtggatgatttgaatgcggatcttatcaccagtcaactgttactattggatgcaaag 315
           |||||||||||| ||| ||| |||||||||| ||| ||||| || ||  |||||||  ||
Sbjct: 354 ccggtggatgatatgagtgctgatcttatcatcagccaactcttgctgctggatgctgag 413

                                                                       
Query: 316 gaccacacaaaggacatcaagttgtttattaattcacccggaggctccatcactgcagga 375
           ||  | || ||||||||||| ||||||||||| ||||| ||||||||||| || ||||||
Sbjct: 414 gataaaactaaggacatcaaattgtttattaactcacctggaggctccataacagcagga 473

                                                                       
Query: 376 atggggatttatgatgccatgaaattttgcaaggctgatatctcaaccgtttgctttgga 435
           |||||  |||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct: 474 atgggagtttatgatgccatgaaattttgcaaggctgatatatcaactgtctgctttgga 533

                                                                       
Query: 436 ttggcggcttccatgggtgcatttttgttagctgctgggacaaagggaaagagattttgc 495
            |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 534 ctggcggcttccatgggtgcatttttgctagctgctgggacaaaggggaagagattttgc 593

                                    
Query: 496 atgccaaatgcgagaattatgatcc 520
           ||||| |||||||||||||||||||
Sbjct: 594 atgcctaatgcgagaattatgatcc 618



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 100 tccgctcatcggcggcggcagcccggcagacgctctcctccg 141
           ||||| |||||||| |||| || |||| ||||||||||||||
Sbjct: 199 tccgcgcatcggcgtcggcggcacggcggacgctctcctccg 240

---

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  226 bits (114), Expect = 6e-56
 Identities = 141/150 (94%)
 Strand = Plus / Plus

                                                                            
Query: 371      caggaatggggatttatgatgccatgaaattttgcaaggctgatatctcaaccgtttgct 430
                ||||||||||  |||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct: 17746815 caggaatgggagtttatgatgccatgaaattttgcaaggctgatatatcaactgtctgct 17746874

                                                                            
Query: 431      ttggattggcggcttccatgggtgcatttttgttagctgctgggacaaagggaaagagat 490
                ||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 17746875 ttggactggcggcttccatgggtgcatttttgctagctgctgggacaaaggggaagagat 17746934

                                              
Query: 491      tttgcatgccaaatgcgagaattatgatcc 520
                |||||||||| |||||||||||||||||||
Sbjct: 17746935 tttgcatgcctaatgcgagaattatgatcc 17746964



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 97/117 (82%)
 Strand = Plus / Plus

                                                                            
Query: 258      ggtggatgatttgaatgcggatcttatcaccagtcaactgttactattggatgcaaagga 317
                |||||||||| ||| ||| |||||||||| ||| ||||| || ||  |||||||  ||||
Sbjct: 17744131 ggtggatgatatgagtgctgatcttatcatcagccaactcttgctgctggatgctgagga 17744190

                                                                         
Query: 318      ccacacaaaggacatcaagttgtttattaattcacccggaggctccatcactgcagg 374
                  | || ||||||||||| ||||||||||| ||||| ||||||||||| || |||||
Sbjct: 17744191 taaaactaaggacatcaaattgtttattaactcacctggaggctccataacagcagg 17744247



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                            
Query: 196      ctcgaggagttggacaccagcaacatgcttctccgccagcggatcatctttctcggctcc 255
                ||||||||| ||||||||| ||||||||| || |||||||| ||| |||| |||||||||
Sbjct: 17742764 ctcgaggagctggacaccaccaacatgctccttcgccagcgcatcgtcttcctcggctcc 17742823

                     
Query: 256      ccggt 260
                |||||
Sbjct: 17742824 ccggt 17742828



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                          
Query: 100      tccgctcatcggcggcggcagcccggcagacgctctcctccg 141
                ||||| |||||||| |||| || |||| ||||||||||||||
Sbjct: 17742669 tccgcgcatcggcgtcggcggcacggcggacgctctcctccg 17742710

---

>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0094H06
          Length = 147245

 Score =  226 bits (114), Expect = 6e-56
 Identities = 141/150 (94%)
 Strand = Plus / Plus

                                                                          
Query: 371    caggaatggggatttatgatgccatgaaattttgcaaggctgatatctcaaccgtttgct 430
              ||||||||||  |||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct: 128350 caggaatgggagtttatgatgccatgaaattttgcaaggctgatatatcaactgtctgct 128409

                                                                          
Query: 431    ttggattggcggcttccatgggtgcatttttgttagctgctgggacaaagggaaagagat 490
              ||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 128410 ttggactggcggcttccatgggtgcatttttgctagctgctgggacaaaggggaagagat 128469

                                            
Query: 491    tttgcatgccaaatgcgagaattatgatcc 520
              |||||||||| |||||||||||||||||||
Sbjct: 128470 tttgcatgcctaatgcgagaattatgatcc 128499



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 97/117 (82%)
 Strand = Plus / Plus

                                                                          
Query: 258    ggtggatgatttgaatgcggatcttatcaccagtcaactgttactattggatgcaaagga 317
              |||||||||| ||| ||| |||||||||| ||| ||||| || ||  |||||||  ||||
Sbjct: 125666 ggtggatgatatgagtgctgatcttatcatcagccaactcttgctgctggatgctgagga 125725

                                                                       
Query: 318    ccacacaaaggacatcaagttgtttattaattcacccggaggctccatcactgcagg 374
                | || ||||||||||| ||||||||||| ||||| ||||||||||| || |||||
Sbjct: 125726 taaaactaaggacatcaaattgtttattaactcacctggaggctccataacagcagg 125782



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                          
Query: 196    ctcgaggagttggacaccagcaacatgcttctccgccagcggatcatctttctcggctcc 255
              ||||||||| ||||||||| ||||||||| || |||||||| ||| |||| |||||||||
Sbjct: 124299 ctcgaggagctggacaccaccaacatgctccttcgccagcgcatcgtcttcctcggctcc 124358

                   
Query: 256    ccggt 260
              |||||
Sbjct: 124359 ccggt 124363



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                        
Query: 100    tccgctcatcggcggcggcagcccggcagacgctctcctccg 141
              ||||| |||||||| |||| || |||| ||||||||||||||
Sbjct: 124204 tccgcgcatcggcgtcggcggcacggcggacgctctcctccg 124245

---

>gb|AF514859.1| Oryza sativa (indica cultivar-group) ATP-dependent Clp protease
            (Pi-HIT-1) gene, complete cds
          Length = 2750

 Score =  218 bits (110), Expect = 1e-53
 Identities = 140/150 (93%)
 Strand = Plus / Plus

                                                                        
Query: 371  caggaatggggatttatgatgccatgaaattttgcaaggctgatatctcaaccgtttgct 430
            ||||||||||  |||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct: 1249 caggaatgggagtttatgatgccatgaaattttgcaaggctgatatatcaactgtctgct 1308

                                                                        
Query: 431  ttggattggcggcttccatgggtgcatttttgttagctgctgggacaaagggaaagagat 490
            ||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 1309 ttggactggcggcttccatgggtgcatttttgctagctgctgggacaaaggggaagagat 1368

                                          
Query: 491  tttgcatgccaaatgcgagaattatgatcc 520
            |||||||||| ||||| |||||||||||||
Sbjct: 1369 tttgcatgcctaatgcaagaattatgatcc 1398

---

>gb|AY109053.1| Zea mays PCO106983 mRNA sequence
          Length = 704

 Score =  159 bits (80), Expect = 1e-35
 Identities = 122/136 (89%)
 Strand = Plus / Minus

                                                                       
Query: 385 tatgatgccatgaaattttgcaaggctgatatctcaaccgtttgctttggattggcggct 444
           |||||||| |||||||||||||| |||||| | ||||| |||||||||||||||||||||
Sbjct: 702 tatgatgctatgaaattttgcaaagctgatgtgtcaactgtttgctttggattggcggct 643

                                                                       
Query: 445 tccatgggtgcatttttgttagctgctgggacaaagggaaagagattttgcatgccaaat 504
           || ||||||||||||||  | ||||||||||||||||| ||||| |  ||||||||||||
Sbjct: 642 tcaatgggtgcatttttacttgctgctgggacaaagggtaagaggtactgcatgccaaat 583

                           
Query: 505 gcgagaattatgatcc 520
           ||||| ||||||||||
Sbjct: 582 gcgaggattatgatcc 567

---

>gb|AY107538.1| Zea mays PCO073954 mRNA sequence
          Length = 607

 Score =  105 bits (53), Expect = 1e-19
 Identities = 199/244 (81%), Gaps = 3/244 (1%)
 Strand = Plus / Plus

                                                                       
Query: 216 caacatgcttctccgccagcggatcatctttctcggctccccggtggatgatttgaatgc 275
           ||||||||| || |||||||| ||| |||| || || |||||||||||||||   | |||
Sbjct: 355 caacatgctccttcgccagcgcatcgtcttcctgggttccccggtggatgatacaagtgc 414

                                                                       
Query: 276 ggatcttatcaccagtcaactgttactattggatgcaaaggaccacacaaaggacatcaa 335
            ||||| || | ||| |||||  |||||||||||||| ||||||| || || || || ||
Sbjct: 415 tgatctcattatcagccaactcctactattggatgcagaggaccagactaaagatattaa 474

                                                                       
Query: 336 gttgtttattaattcacccggaggctccatcactgcaggaatggggatttatgatgccat 395
            |||||||| || ||||| |||||||| || || ||||| |||||  | |||||||| ||
Sbjct: 475 attgtttatcaactcacctggaggctctataacagcagggatgggagtatatgatgctat 534

                                                                       
Query: 396 gaaattttgcaaggctgatatctcaaccgtttgctttggattggcggcttccatgggtgc 455
           |||||||||||| |||||| | ||||  |||| |||| ||||||||||||  ||||||||
Sbjct: 535 gaaattttgcaaagctgatgtgtcaa-tgttt-cttt-gattggcggcttnaatgggtgc 591

               
Query: 456 attt 459
           ||||
Sbjct: 592 attt 595

---

>gb|AY496111.1| Capsicum annuum ClpP putative protein mRNA, partial sequence
          Length = 624

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 75/91 (82%)
 Strand = Plus / Plus

                                                                       
Query: 324 aaaggacatcaagttgtttattaattcacccggaggctccatcactgcaggaatggggat 383
           |||||||||||  ||| | ||||||||||| || || ||  | ||||| || ||||| ||
Sbjct: 392 aaaggacatcacattgatcattaattcacctggtggttcagtaactgctgggatgggaat 451

                                          
Query: 384 ttatgatgccatgaaattttgcaaggctgat 414
            ||||||||||||||| | ||||||||||||
Sbjct: 452 ctatgatgccatgaaaatgtgcaaggctgat 482

---

>gb|L41144.1|BNACLPPA Brassica oleracea ClpP (clpP) mRNA, partial cds
          Length = 971

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 338 tgtttattaattcacccggaggctccatcactgcaggaatggggatttatgatgccatga 397
           ||||||| ||||||||||| || || |||||||| || ||||| || |||||||| ||||
Sbjct: 295 tgtttatcaattcacccggtggttctatcactgctgggatgggaatatatgatgcaatga 354

             
Query: 398 aa 399
           ||
Sbjct: 355 aa 356

---

>gb|DQ158856.1| Bigelowiella natans nucleomorph chromosome 1, partial sequence
          Length = 140590

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 442   gcttccatgggtgcatttttgttagct 468
             ||||| |||||||||||||||||||||
Sbjct: 83017 gcttcaatgggtgcatttttgttagct 82991

---

>gb|CP000238.1| Baumannia cicadellinicola str. Hc (Homalodisca coagulata), complete
              genome
          Length = 686194

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 442    gcttccatgggtgcatttttgttagctgctgggac 476
              ||||||||||||||||| ||| | |||||||||||
Sbjct: 281007 gcttccatgggtgcattcttgcttgctgctgggac 280973

---

>gb|AY267691.1| Bigelowiella natans ClpP protease mRNA, partial cds; nuclear gene
           for plastid product
          Length = 867

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 442 gcttccatgggtgcatttttgttagct 468
           ||||| |||||||||||||||||||||
Sbjct: 394 gcttcaatgggtgcatttttgttagct 420

---

>gb|DQ071229.1| Bigelowiella natans clone 3 clpP2 mRNA, partial sequence;
           nucleomorph
          Length = 832

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 442 gcttccatgggtgcatttttgttagct 468
           ||||| |||||||||||||||||||||
Sbjct: 395 gcttcaatgggtgcatttttgttagct 421

---

>gb|DQ071224.1| Bigelowiella natans clone 2 clpP2 mRNA, partial sequence;
           nucleomorph
          Length = 857

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 442 gcttccatgggtgcatttttgttagct 468
           ||||| |||||||||||||||||||||
Sbjct: 396 gcttcaatgggtgcatttttgttagct 422

---

>gb|DQ071217.1| Bigelowiella natans clone 4 clpP2 mRNA, partial sequence;
           nucleomorph
          Length = 813

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 442 gcttccatgggtgcatttttgttagct 468
           ||||| |||||||||||||||||||||
Sbjct: 388 gcttcaatgggtgcatttttgttagct 414

---

>gb|DP000002.1| Sminthopsis macroura target 1 genomic scaffold
          Length = 305394

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 468   tgctgggacaaagggaaagaga 489
             ||||||||||||||||||||||
Sbjct: 53011 tgctgggacaaagggaaagaga 53032

---

>gb|AC123967.3| Sminthopsis macroura clone 102C13, complete sequence
          Length = 59818

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 468   tgctgggacaaagggaaagaga 489
             ||||||||||||||||||||||
Sbjct: 53011 tgctgggacaaagggaaagaga 53032

---

>gb|AE009001.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 27
           of 256 of the complete sequence
          Length = 11563

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 6   atggcgaccatcacggcgcct 26
           |||||||||||||||||||||
Sbjct: 794 atggcgaccatcacggcgcct 774

---

>gb|DQ071215.1| Bigelowiella natans clpP2 mRNA, partial sequence
          Length = 874

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 442 gcttccatgggtgcatttttgttagct 468
           ||||| ||||| |||||||||||||||
Sbjct: 393 gcttcnatgggngcatttttgttagct 419

---

>gb|AC093283.3| Homo sapiens chromosome 5 clone RP11-428C6, complete sequence
          Length = 206254

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 444   ttccatgggtgcatttttgtt 464
             |||||||||||||||||||||
Sbjct: 78699 ttccatgggtgcatttttgtt 78719

---

>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 6      atggcgaccatcacggcgcct 26
              |||||||||||||||||||||
Sbjct: 286130 atggcgaccatcacggcgcct 286110

---

>gb|AC149149.3| Xenopus tropicalis clone ISB-175F5, complete sequence
          Length = 116498

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 449   tgggtgcatttttgttagctg 469
             |||||||||||||||||||||
Sbjct: 85910 tgggtgcatttttgttagctg 85930

---

>ref|NM_123547.1| Arabidopsis thaliana protein prenyltransferase AT5G41820 mRNA,
           complete cds
          Length = 2064

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 290 gtcaactgttactattggat 309
           ||||||||||||||||||||
Sbjct: 921 gtcaactgttactattggat 940

---

>ref|NM_105338.2| Arabidopsis thaliana CLPP3; endopeptidase Clp AT1G66670 (CLPP3)
           mRNA, complete cds
          Length = 1194

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                       
Query: 340 tttattaattcacccggaggctccatcactgcaggaatggggatttatgatgccatgaaa 399
           ||||| ||||||||||| || || || ||||| || ||||| || |||||||| ||||||
Sbjct: 439 tttatcaattcacccggtggatctattactgctgggatgggaatatatgatgcaatgaaa 498

---

>ref|XM_480351.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1248

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 164 cgggagcgcgaccggcagct 183
           ||||||||||||||||||||
Sbjct: 124 cgggagcgcgaccggcagct 143

---

>emb|CR694080.2|CNS0FYI4 Tetraodon nigroviridis full-length cDNA
          Length = 764

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 451 ggtgcatttttgttagctgc 470
           ||||||||||||||||||||
Sbjct: 587 ggtgcatttttgttagctgc 606

---

>emb|CR678681.2|CNS0FMMD Tetraodon nigroviridis full-length cDNA
          Length = 679

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 451 ggtgcatttttgttagctgc 470
           ||||||||||||||||||||
Sbjct: 534 ggtgcatttttgttagctgc 553

---

>emb|CR678052.2|CNS0FM57 Tetraodon nigroviridis full-length cDNA
          Length = 745

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 451 ggtgcatttttgttagctgc 470
           ||||||||||||||||||||
Sbjct: 567 ggtgcatttttgttagctgc 586

---

>emb|CR674696.2|CNS0FJKE Tetraodon nigroviridis full-length cDNA
          Length = 769

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 451 ggtgcatttttgttagctgc 470
           ||||||||||||||||||||
Sbjct: 591 ggtgcatttttgttagctgc 610

---

>emb|CR671456.2|CNS0FH2E Tetraodon nigroviridis full-length cDNA
          Length = 757

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 451 ggtgcatttttgttagctgc 470
           ||||||||||||||||||||
Sbjct: 586 ggtgcatttttgttagctgc 605

---

>emb|CR670920.2|CNS0FGNI Tetraodon nigroviridis full-length cDNA
          Length = 716

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 451 ggtgcatttttgttagctgc 470
           ||||||||||||||||||||
Sbjct: 538 ggtgcatttttgttagctgc 557

---

>emb|CR669971.2|CNS0FFX5 Tetraodon nigroviridis full-length cDNA
          Length = 757

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 451 ggtgcatttttgttagctgc 470
           ||||||||||||||||||||
Sbjct: 586 ggtgcatttttgttagctgc 605

---

>emb|CR668522.2|CNS0FESW Tetraodon nigroviridis full-length cDNA
          Length = 753

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 451 ggtgcatttttgttagctgc 470
           ||||||||||||||||||||
Sbjct: 579 ggtgcatttttgttagctgc 598

---

>emb|CR665602.2|CNS0FCJS Tetraodon nigroviridis full-length cDNA
          Length = 765

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 451 ggtgcatttttgttagctgc 470
           ||||||||||||||||||||
Sbjct: 596 ggtgcatttttgttagctgc 615

---

>emb|CR663706.2|CNS0FB34 Tetraodon nigroviridis full-length cDNA
          Length = 766

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 451 ggtgcatttttgttagctgc 470
           ||||||||||||||||||||
Sbjct: 586 ggtgcatttttgttagctgc 605

---

>emb|CR662211.2|CNS0F9XL Tetraodon nigroviridis full-length cDNA
          Length = 769

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 451 ggtgcatttttgttagctgc 470
           ||||||||||||||||||||
Sbjct: 591 ggtgcatttttgttagctgc 610

---

>emb|CR661865.2|CNS0F9NZ Tetraodon nigroviridis full-length cDNA
          Length = 526

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 451 ggtgcatttttgttagctgc 470
           ||||||||||||||||||||
Sbjct: 346 ggtgcatttttgttagctgc 365

---

>gb|AC142209.3| Homo sapiens chromosome 5 clone XXyac-ICRF4X137E6, complete sequence
          Length = 38959

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   aaattttgcaaggctgatat 416
             ||||||||||||||||||||
Sbjct: 29077 aaattttgcaaggctgatat 29058

---

>dbj|AB190353.1| Brassica rapa BrSLGf2b, BrSLGf2a genes, complete cds
          Length = 39220

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 340  tttattaattcacccggaggctccatcactgc 371
            ||||| ||||||||||| || |||||||||||
Sbjct: 7477 tttatcaattcacccggtggttccatcactgc 7446

---

>gb|AC108120.3| Homo sapiens chromosome 5 clone RP11-524L6, complete sequence
          Length = 212755

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 402    ttgcaaggctgatatctcaa 421
              ||||||||||||||||||||
Sbjct: 119802 ttgcaaggctgatatctcaa 119783

---

>gb|AC010240.7| Homo sapiens chromosome 5 clone CTC-350I8, complete sequence
          Length = 112646

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   tcgaggagttggacaccagc 216
             ||||||||||||||||||||
Sbjct: 92860 tcgaggagttggacaccagc 92841

---

>gb|AY072526.1| Arabidopsis thaliana ATP-dependent Clp protease (nClpP3)
           (At1g66670; T12I7.12) mRNA, complete cds
          Length = 986

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                       
Query: 340 tttattaattcacccggaggctccatcactgcaggaatggggatttatgatgccatgaaa 399
           ||||| ||||||||||| || || || ||||| || ||||| || |||||||| ||||||
Sbjct: 385 tttatcaattcacccggtggatctattactgctgggatgggaatatatgatgcaatgaaa 444

---

>gb|AC159023.4| Pan troglodytes BAC clone CH251-506L16 from chromosome unknown, complete
              sequence
          Length = 180977

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    tcgaggagttggacaccagc 216
              ||||||||||||||||||||
Sbjct: 107093 tcgaggagttggacaccagc 107112

---

>gb|AC160131.2| Mus musculus BAC clone RP23-226D9 from chromosome 12, complete sequence
          Length = 202807

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 472    gggacaaagggaaagagatt 491
              ||||||||||||||||||||
Sbjct: 147511 gggacaaagggaaagagatt 147492

---

>gb|AF370528.1|AF370528 Arabidopsis thaliana ATP-dependent Clp protease; nClpP3 (T12I7.12)
           mRNA, complete cds
          Length = 1108

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                       
Query: 340 tttattaattcacccggaggctccatcactgcaggaatggggatttatgatgccatgaaa 399
           ||||| ||||||||||| || || || ||||| || ||||| || |||||||| ||||||
Sbjct: 422 tttatcaattcacccggtggatctattactgctgggatgggaatatatgatgcaatgaaa 481

---

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 164     cgggagcgcgaccggcagct 183
               ||||||||||||||||||||
Sbjct: 4540750 cgggagcgcgaccggcagct 4540769

---

>emb|BX817427.1|CNS0ACFS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL21ZH02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1046

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                       
Query: 340 tttattaattcacccggaggctccatcactgcaggaatggggatttatgatgccatgaaa 399
           ||||| ||||||||||| || || || ||||| || ||||| || |||||||| ||||||
Sbjct: 381 tttatcaattcacccggtggatctattactgctgggatgggaatatatgatgcaatgaaa 440

---

>gb|AY087349.1| Arabidopsis thaliana clone 34480 mRNA, complete sequence
          Length = 1190

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                       
Query: 340 tttattaattcacccggaggctccatcactgcaggaatggggatttatgatgccatgaaa 399
           ||||| ||||||||||| || || || ||||| || ||||| || |||||||| ||||||
Sbjct: 439 tttatcaattcacccggtggatctattactgctgggatgggaatatatgatgcaatgaaa 498

---

>gb|AC159743.4| Pan troglodytes BAC clone CH251-267D14 from chromosome unknown, complete
              sequence
          Length = 178837

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    tcgaggagttggacaccagc 216
              ||||||||||||||||||||
Sbjct: 166487 tcgaggagttggacaccagc 166468

---

>dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1120_C08
          Length = 150300

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   cgggagcgcgaccggcagct 183
             ||||||||||||||||||||
Sbjct: 64598 cgggagcgcgaccggcagct 64617

---

>dbj|AB016871.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16L22
          Length = 79109

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   gtcaactgttactattggat 309
             ||||||||||||||||||||
Sbjct: 43371 gtcaactgttactattggat 43390

---

>dbj|AB022328.1| Arabidopsis thaliana mRNA for nClpP3 (nuclear encoded ClpP3),
           complete cds
          Length = 1124

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                       
Query: 340 tttattaattcacccggaggctccatcactgcaggaatggggatttatgatgccatgaaa 399
           ||||| ||||||||||| || || || ||||| || ||||| || |||||||| ||||||
Sbjct: 386 tttatcaattcacccggtggatctattactgctgggatgggaatatatgatgcaatgaaa 445

---

>dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0583B06
          Length = 134442

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    cgggagcgcgaccggcagct 183
              ||||||||||||||||||||
Sbjct: 106640 cgggagcgcgaccggcagct 106659

---

>ref|XM_308493.2| Anopheles gambiae str. PEST ENSANGP00000022800
           (ENSANGG00000007128), partial mRNA
          Length = 2943

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 94  cggccatccgctcatcggcggcggcagc 121
           |||| ||||||||| |||||||||||||
Sbjct: 798 cggcgatccgctcagcggcggcggcagc 825

---

>gb|AF032123.1|AF032123 Arabidopsis thaliana clp protease (CLP) mRNA, partial cds
          Length = 1147

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                       
Query: 340 tttattaattcacccggaggctccatcactgcaggaatggggatttatgatgccatgaaa 399
           ||||| ||||||||||| || || || ||||| || ||||| || |||||||| ||||||
Sbjct: 388 tttatcaattcacccggtggatctattactgctgggatgggaatatatgatgcaatgaaa 447

---

>emb|AL023580.1|HS372K1 Human DNA sequence from clone RP3-372K1 on chromosome 6q24 Contains a
              basic transcription factor (BTF3) pseudogene, the gene for
              a possible ortholog of murine oligodendrocyte transcription
              factor 3 (Olig3) and four CpG islands, complete sequence
          Length = 147055

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 360    ctccatcactgcaggaatgg 379
              ||||||||||||||||||||
Sbjct: 116019 ctccatcactgcaggaatgg 116038


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,247,109
Number of Sequences: 3902068
Number of extensions: 4247109
Number of successful extensions: 81286
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81106
Number of HSP's gapped (non-prelim): 177
length of query: 520
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 497
effective length of database: 17,143,297,704
effective search space: 8520218958888
effective search space used: 8520218958888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---