| Clone Name | basd17h08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY150676.1| Hordeum vulgare subsp. vulgare bZIP transcription factor ABI5 (ABI5) mRNA, complete cds Length = 1300 Score = 444 bits (224), Expect = e-121 Identities = 250/255 (98%), Gaps = 3/255 (1%) Strand = Plus / Plus Query: 1 cagtgcttgcgaanaacgctgnaccgggccctggtgaggnatcaaggnagtcaacatcga 60 |||||||| |||| ||||||| ||||||||||||||||| ||||||| |||||||||||| Sbjct: 1049 cagtgcttacgaagaacgctg-accgggccctggtgagg-atcaagg-agtcaacatcga 1105 Query: 61 cattccgccggtctacctgctttgtacatataatttgctctattgtaaaccgatgatgga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1106 cattccgccggtctacctgctttgtacatataatttgctctattgtaaaccgatgatgga 1165 Query: 121 ccagacctgtgcttgattgaccttctagtttcctttctcgtgctgcttcagagaccgctg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1166 ccagacctgtgcttgattgaccttctagtttcctttctcgtgctgcttcagagaccgctg 1225 Query: 181 acctgtaggctagtgtgtagtcgaggaggggagccgtaagtaagaaccgctgtaatttgg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1226 acctgtaggctagtgtgtagtcgaggaggggagccgtaagtaagaaccgctgtaatttgg 1285 Query: 241 cagttgtccttcaga 255 ||||||||||||||| Sbjct: 1286 cagttgtccttcaga 1300
>dbj|AB193553.1| Triticum aestivum WABI5 mRNA for bZIP transcription factor, complete cds Length = 1228 Score = 202 bits (102), Expect = 7e-49 Identities = 175/194 (90%), Gaps = 8/194 (4%) Strand = Plus / Plus Query: 1 cagtgcttgcgaanaacgctgnaccgggccctggtgaggnatcaaggnagtcaa----ca 56 ||||||||||||| |||| || ||||| ||||||||||| ||| ||| |||||| || Sbjct: 1039 cagtgcttgcgaagaacgttg-accggcccctggtgagg-atcgagg-agtcaattggca 1095 Query: 57 tcgacattccgccggtctacctgctttgtacatataatttgctctattgtaaaccgatga 116 ||| |||||| |||||| |||||||||||||||||| || |||||||||||||||||||| Sbjct: 1096 tcggcattccaccggtcgacctgctttgtacatata-ttcgctctattgtaaaccgatga 1154 Query: 117 tggaccagacctgtgcttgattgaccttctagtttcctttctcgtgctgcttcagagacc 176 ||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| Sbjct: 1155 tggaccagacctgtgcttggttgacctgctagcttcctttctcgtgctgcttcagagacc 1214 Query: 177 gctgacctgtaggc 190 |||||||||||||| Sbjct: 1215 gctgacctgtaggc 1228
>gb|AC006474.3| Homo sapiens PAC clone RP4-669I17 from 7, complete sequence Length = 69718 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 233 taatttggcagttgtccttcagaa 256 |||||||||| ||||||||||||| Sbjct: 29103 taatttggcatttgtccttcagaa 29080
>emb|CR759874.20| Zebrafish DNA sequence from clone CH211-214H24 in linkage group 20, complete sequence Length = 223471 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ctgtaggctagtgtgtagtc 202 |||||||||||||||||||| Sbjct: 169349 ctgtaggctagtgtgtagtc 169368
>emb|BX510931.8| Zebrafish DNA sequence from clone CH211-132M19 in linkage group 21, complete sequence Length = 181237 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ctgtaatttggcagttgtcc 249 |||||||||||||||||||| Sbjct: 28499 ctgtaatttggcagttgtcc 28480
>emb|AL805896.12| Mouse DNA sequence from clone RP23-402I8 on chromosome 4, complete sequence Length = 210141 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 332 tttgtccttattagagatttaaga 355 |||||||||||||||||| ||||| Sbjct: 129803 tttgtccttattagagatctaaga 129780
>gb|AC151581.2| Pan troglodytes BAC clone RP43-166C19 from chromosome 7, complete sequence Length = 180623 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 accttctagtttcctttctc 159 |||||||||||||||||||| Sbjct: 8351 accttctagtttcctttctc 8370
>dbj|AP006383.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT05I20, TM0245, complete sequence Length = 73179 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 aagataaagtcggatttgag 371 |||||||||||||||||||| Sbjct: 31809 aagataaagtcggatttgag 31828 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,602,149 Number of Sequences: 3902068 Number of extensions: 2602149 Number of successful extensions: 39260 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39245 Number of HSP's gapped (non-prelim): 13 length of query: 449 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 427 effective length of database: 17,147,199,772 effective search space: 7321854302644 effective search space used: 7321854302644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)