ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd17h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY150676.1| Hordeum vulgare subsp. vulgare bZIP transcription... 444 e-121
2dbj|AB193553.1| Triticum aestivum WABI5 mRNA for bZIP transcript... 202 7e-49
3gb|AC006474.3| Homo sapiens PAC clone RP4-669I17 from 7, complet... 40 6.0
4emb|CR759874.20| Zebrafish DNA sequence from clone CH211-214H24 ... 40 6.0
5emb|BX510931.8| Zebrafish DNA sequence from clone CH211-132M19 i... 40 6.0
6emb|AL805896.12| Mouse DNA sequence from clone RP23-402I8 on chr... 40 6.0
7gb|AC151581.2| Pan troglodytes BAC clone RP43-166C19 from chromo... 40 6.0
8dbj|AP006383.1| Lotus japonicus genomic DNA, chromosome 6, clone... 40 6.0

>gb|AY150676.1| Hordeum vulgare subsp. vulgare bZIP transcription factor ABI5 (ABI5)
            mRNA, complete cds
          Length = 1300

 Score =  444 bits (224), Expect = e-121
 Identities = 250/255 (98%), Gaps = 3/255 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    cagtgcttgcgaanaacgctgnaccgggccctggtgaggnatcaaggnagtcaacatcga 60
            |||||||| |||| ||||||| ||||||||||||||||| ||||||| ||||||||||||
Sbjct: 1049 cagtgcttacgaagaacgctg-accgggccctggtgagg-atcaagg-agtcaacatcga 1105

                                                                        
Query: 61   cattccgccggtctacctgctttgtacatataatttgctctattgtaaaccgatgatgga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 cattccgccggtctacctgctttgtacatataatttgctctattgtaaaccgatgatgga 1165

                                                                        
Query: 121  ccagacctgtgcttgattgaccttctagtttcctttctcgtgctgcttcagagaccgctg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 ccagacctgtgcttgattgaccttctagtttcctttctcgtgctgcttcagagaccgctg 1225

                                                                        
Query: 181  acctgtaggctagtgtgtagtcgaggaggggagccgtaagtaagaaccgctgtaatttgg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1226 acctgtaggctagtgtgtagtcgaggaggggagccgtaagtaagaaccgctgtaatttgg 1285

                           
Query: 241  cagttgtccttcaga 255
            |||||||||||||||
Sbjct: 1286 cagttgtccttcaga 1300



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>dbj|AB193553.1| Triticum aestivum WABI5 mRNA for bZIP transcription factor, complete
            cds
          Length = 1228

 Score =  202 bits (102), Expect = 7e-49
 Identities = 175/194 (90%), Gaps = 8/194 (4%)
 Strand = Plus / Plus

                                                                        
Query: 1    cagtgcttgcgaanaacgctgnaccgggccctggtgaggnatcaaggnagtcaa----ca 56
            ||||||||||||| |||| || ||||| ||||||||||| ||| ||| ||||||    ||
Sbjct: 1039 cagtgcttgcgaagaacgttg-accggcccctggtgagg-atcgagg-agtcaattggca 1095

                                                                        
Query: 57   tcgacattccgccggtctacctgctttgtacatataatttgctctattgtaaaccgatga 116
            ||| |||||| |||||| |||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1096 tcggcattccaccggtcgacctgctttgtacatata-ttcgctctattgtaaaccgatga 1154

                                                                        
Query: 117  tggaccagacctgtgcttgattgaccttctagtttcctttctcgtgctgcttcagagacc 176
            ||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||
Sbjct: 1155 tggaccagacctgtgcttggttgacctgctagcttcctttctcgtgctgcttcagagacc 1214

                          
Query: 177  gctgacctgtaggc 190
            ||||||||||||||
Sbjct: 1215 gctgacctgtaggc 1228



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>gb|AC006474.3| Homo sapiens PAC clone RP4-669I17 from 7, complete sequence
          Length = 69718

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 233   taatttggcagttgtccttcagaa 256
             |||||||||| |||||||||||||
Sbjct: 29103 taatttggcatttgtccttcagaa 29080



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>emb|CR759874.20| Zebrafish DNA sequence from clone CH211-214H24 in linkage group 20,
              complete sequence
          Length = 223471

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    ctgtaggctagtgtgtagtc 202
              ||||||||||||||||||||
Sbjct: 169349 ctgtaggctagtgtgtagtc 169368



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>emb|BX510931.8| Zebrafish DNA sequence from clone CH211-132M19 in linkage group 21,
             complete sequence
          Length = 181237

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   ctgtaatttggcagttgtcc 249
             ||||||||||||||||||||
Sbjct: 28499 ctgtaatttggcagttgtcc 28480



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>emb|AL805896.12| Mouse DNA sequence from clone RP23-402I8 on chromosome 4, complete
              sequence
          Length = 210141

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 332    tttgtccttattagagatttaaga 355
              |||||||||||||||||| |||||
Sbjct: 129803 tttgtccttattagagatctaaga 129780



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>gb|AC151581.2| Pan troglodytes BAC clone RP43-166C19 from chromosome 7, complete
            sequence
          Length = 180623

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 140  accttctagtttcctttctc 159
            ||||||||||||||||||||
Sbjct: 8351 accttctagtttcctttctc 8370



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>dbj|AP006383.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT05I20, TM0245,
             complete sequence
          Length = 73179

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   aagataaagtcggatttgag 371
             ||||||||||||||||||||
Sbjct: 31809 aagataaagtcggatttgag 31828


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,602,149
Number of Sequences: 3902068
Number of extensions: 2602149
Number of successful extensions: 39260
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39245
Number of HSP's gapped (non-prelim): 13
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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