Clone Information

BLAST Search Result

Clone Name	basd17g12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	IM30_ORYSA (Q8S0J7) Probable membrane-associated 30 kDa protein,...	272	6e-73
2	IM30_ARATH (O80796) Probable membrane-associated 30 kDa protein,...	186	6e-47
3	IM30_PEA (Q03943) Membrane-associated 30 kDa protein, chloroplas...	179	5e-45
4	Y617_SYNY3 (Q55707) Hypothetical protein sll0617	100	2e-21
5	PSPA_DEIRA (Q9RUB7) Phage shock protein A homolog	74	2e-13
6	PSPA_SHIFL (P0AFM8) Phage shock protein A	71	2e-12
7	PSPA_ECOLI (P0AFM6) Phage shock protein A	71	2e-12
8	PSPA_ECO57 (P0AFM7) Phage shock protein A	71	2e-12
9	PSPA_BACSU (P54617) Phage shock protein A homolog	60	6e-09
10	LIAH_BACSU (O32201) Protein liaH	47	3e-05
11	MUTS2_BACHD (Q9K8A0) MutS2 protein	38	0.019
12	POLG_TUMVQ (Q02597) Genome polyprotein [Contains: P1 proteinase ...	35	0.13
13	DDX27_MOUSE (Q921N6) Probable ATP-dependent RNA helicase DDX27 (...	35	0.21
14	DDX27_HUMAN (Q96GQ7) Probable ATP-dependent RNA helicase DDX27 (...	33	0.48
15	GOGA3_MOUSE (P55937) Golgin subfamily A member 3 (Golgin-160) (M...	33	0.48
16	SAS6_BRARE (Q7ZVT3) Spindle assembly abnormal protein 6 homolog	33	0.48
17	CP46A_HUMAN (Q9Y6A2) Cytochrome p450 46A1 (EC 1.14.13.98) (Chole...	33	0.48
18	RPOD_HELPJ (Q9ZMY3) RNA polymerase sigma factor rpoD (Sigma-70)	33	0.62
19	FLIP1_RAT (Q8K4T4) Filamin-A-interacting protein 1 (FILIP)	33	0.81
20	GOGA3_HUMAN (Q08378) Golgin subfamily A member 3 (Golgin-160) (G...	33	0.81
21	FLIP1_HUMAN (Q7Z7B0) Filamin-A-interacting protein 1 (FILIP)	33	0.81
22	HIP1R_MOUSE (Q9JKY5) Huntingtin-interacting protein 1-related pr...	32	1.4
23	PESC_BRARE (P79741) Pescadillo	32	1.8
24	SUBE_BACSU (P16396) Minor extracellular protease epr precursor (...	32	1.8
25	FLIP1_MOUSE (Q9CS72) Filamin-A-interacting protein 1 (FILIP)	31	2.4
26	RMD1_YEAST (Q03441) Sporulation protein RMD1	31	2.4
27	CP46A_MOUSE (Q9WVK8) Cytochrome p450 46A1 (EC 1.14.13.98) (Chole...	31	2.4
28	HOS4_YEAST (P40480) Protein HOS4	31	3.1
29	FLIDP_VIBPA (Q56705) Polar flagellar hook-associated protein 2 (...	31	3.1
30	RPOD_HELPY (P55993) RNA polymerase sigma factor rpoD (Sigma-70)	30	4.0
31	KIF3C_RAT (O55165) Kinesin-like protein KIF3C	30	4.0
32	KIF3C_MOUSE (O35066) Kinesin-like protein KIF3C	30	4.0
33	KIF3C_HUMAN (O14782) Kinesin-like protein KIF3C	30	4.0
34	IF2_PSEHT (Q3IJ53) Translation initiation factor IF-2	30	4.0
35	HN1_HUMAN (Q9UK76) Hematological and neurological expressed 1 pr...	30	4.0
36	DNMBP_HUMAN (Q6XZF7) Dynamin-binding protein (Scaffold protein T...	30	5.3
37	GATB_FUSNN (Q8R680) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe...	30	6.9
38	PSA73_DROME (Q27575) Proteasome subunit alpha type 7-1B (EC 3.4....	30	6.9
39	PARC_SALTY (P26973) DNA topoisomerase 4 subunit A (EC 5.99.1.-) ...	30	6.9
40	CLPB2_SYNPX (Q7U3T3) Chaperone clpB 2	30	6.9
41	CS029_HUMAN (Q8WUQ7) Protein C19orf29 (NY-REN-24 antigen)	30	6.9
42	KRHB2_HUMAN (Q9NSB4) Keratin, type II cuticular Hb2 (Hair kerati...	30	6.9
43	PER3_HUMAN (P56645) Period circadian protein 3 (hPER3)	30	6.9
44	POLG_TUMVJ (P89509) Genome polyprotein [Contains: P1 proteinase ...	29	9.0

>IM30_ORYSA (Q8S0J7) Probable membrane-associated 30 kDa protein, chloroplast|
           precursor
          Length = 317

 Score =  272 bits (695), Expect = 6e-73
 Identities = 141/160 (88%), Positives = 150/160 (93%), Gaps = 1/160 (0%)
 Frame = +3

Query: 120 MEIRAPPTSLRLATPP-ATASFRPASLRTSFLNGSVSLRAVQVRQSNVNRFKCNAIRSNL 296
           MEIRAPPTSLRLA PP A+ASFR  +LRTSFLNGSVSLR +QVRQSNVNRFKCN IRSNL
Sbjct: 1   MEIRAPPTSLRLAPPPPASASFRRTALRTSFLNGSVSLRLIQVRQSNVNRFKCNGIRSNL 60

Query: 297 FDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKA 476
            DR +R+V+SYANA+LSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKA
Sbjct: 61  LDRFSRVVKSYANAVLSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKA 120

Query: 477 AEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASS 596
           AEQA  DWYRRAQLALQKG+EDLAREALKRRKSYA+NASS
Sbjct: 121 AEQASDDWYRRAQLALQKGDEDLAREALKRRKSYADNASS 160

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>IM30_ARATH (O80796) Probable membrane-associated 30 kDa protein, chloroplast|
           precursor
          Length = 330

 Score =  186 bits (471), Expect = 6e-47
 Identities = 100/162 (61%), Positives = 126/162 (77%), Gaps = 8/162 (4%)
 Frame = +3

Query: 135 PPTSLRLATPPATASFRPASLR-----TSFL-NGSVSLRAVQVRQSNVNRFKCNA--IRS 290
           PP     ++ P+T+S RP SLR     TSF  N S +LR   +R +  NR +CN      
Sbjct: 13  PPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACDNRLRCNGHGATM 72

Query: 291 NLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKY 470
           NLF+R +R+V+SYANA++SSFEDPEKIL+Q V+EMN DLTKMRQATAQVLASQK+L+NKY
Sbjct: 73  NLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMRQATAQVLASQKQLQNKY 132

Query: 471 KAAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASS 596
           KAA+Q+  DWY+RAQLAL KG+EDLAREALKRRKS+A+NA++
Sbjct: 133 KAAQQSSDDWYKRAQLALAKGDEDLAREALKRRKSFADNATA 174

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>IM30_PEA (Q03943) Membrane-associated 30 kDa protein, chloroplast precursor|
           (M30)
          Length = 323

 Score =  179 bits (454), Expect = 5e-45
 Identities = 98/153 (64%), Positives = 117/153 (76%)
 Frame = +3

Query: 138 PTSLRLATPPATASFRPASLRTSFLNGSVSLRAVQVRQSNVNRFKCNAIRSNLFDRLTRL 317
           P+S  L  P AT  F    + T      +  R +++ +  V       +R NLFDR  R+
Sbjct: 18  PSSSLLKKPLATTLFGTRPVDT------LKFRVMRIAKP-VRGGGAIGVRMNLFDRFARV 70

Query: 318 VRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADAD 497
           V+SYANA++S+FEDPEKIL+QAVLEMNDDLTKMRQATAQVLASQKRLENKYKAA+QA  +
Sbjct: 71  VKSYANALVSTFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAQQASEE 130

Query: 498 WYRRAQLALQKGEEDLAREALKRRKSYAENASS 596
           WYR+AQLALQKGEEDLAREALKRRKS+A+NASS
Sbjct: 131 WYRKAQLALQKGEEDLAREALKRRKSFADNASS 163

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>Y617_SYNY3 (Q55707) Hypothetical protein sll0617|
          Length = 267

 Score =  100 bits (250), Expect = 2e-21
 Identities = 50/101 (49%), Positives = 71/101 (70%)
 Frame = +3

Query: 294 LFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYK 473
           LFDRL R+VR+  N ++S  EDPEK+L+QAV++M +DL ++RQA A+ +A +KR E +  
Sbjct: 3   LFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQRLN 62

Query: 474 AAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASS 596
              Q    W  RA+LAL  GEE+LAREAL R+KS  + A++
Sbjct: 63  QDTQEAKKWEDRAKLALTNGEENLAREALARKKSLTDTAAA 103

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>PSPA_DEIRA (Q9RUB7) Phage shock protein A homolog|
          Length = 223

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 38/100 (38%), Positives = 63/100 (63%)
 Frame = +3

Query: 291 NLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKY 470
           ++FDRL+RL+R+  N ++S  EDP KI+DQA+ +M       R   A  +A   +LE + 
Sbjct: 2   SIFDRLSRLLRANVNDMISKAEDPAKIIDQALRDMRSAYADARNEVAGAMAQAAKLEREA 61

Query: 471 KAAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENA 590
               +  A++ ++A+ AL+ G EDLAREAL+R +++ + A
Sbjct: 62  GTNSKLAAEYEKKAEEALRGGSEDLAREALRRAQNHKDLA 101

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>PSPA_SHIFL (P0AFM8) Phage shock protein A|
          Length = 221

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 34/97 (35%), Positives = 57/97 (58%)
 Frame = +3

Query: 294 LFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYK 473
           +F R   +V +  NA+L   EDP+K++   + EM D L ++R  +A+ LA +K+L  + +
Sbjct: 2   IFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIE 61

Query: 474 AAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAE 584
            A   + +W  +A+LAL K  EDLAR AL  ++   +
Sbjct: 62  QASAREVEWQEKAELALLKEREDLARAALIEKQKLTD 98

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>PSPA_ECOLI (P0AFM6) Phage shock protein A|
          Length = 221

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 34/97 (35%), Positives = 57/97 (58%)
 Frame = +3

Query: 294 LFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYK 473
           +F R   +V +  NA+L   EDP+K++   + EM D L ++R  +A+ LA +K+L  + +
Sbjct: 2   IFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIE 61

Query: 474 AAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAE 584
            A   + +W  +A+LAL K  EDLAR AL  ++   +
Sbjct: 62  QASAREVEWQEKAELALLKEREDLARAALIEKQKLTD 98

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>PSPA_ECO57 (P0AFM7) Phage shock protein A|
          Length = 221

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 34/97 (35%), Positives = 57/97 (58%)
 Frame = +3

Query: 294 LFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYK 473
           +F R   +V +  NA+L   EDP+K++   + EM D L ++R  +A+ LA +K+L  + +
Sbjct: 2   IFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIE 61

Query: 474 AAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAE 584
            A   + +W  +A+LAL K  EDLAR AL  ++   +
Sbjct: 62  QASAREVEWQEKAELALLKEREDLARAALIEKQKLTD 98

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>PSPA_BACSU (P54617) Phage shock protein A homolog|
          Length = 226

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 33/101 (32%), Positives = 54/101 (53%)
 Frame = +3

Query: 291 NLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKY 470
           ++  R   ++ +  NA+L   E+PEK++DQ +  MN DL K++  TA V+A ++R + +Y
Sbjct: 1   SIIGRFKDIMSANINALLDKAENPEKMVDQYLRNMNSDLAKVKAETAAVMAEEQRAKREY 60

Query: 471 KAAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENAS 593
              +         A  ALQ G E  AR+ L+R+ S     S
Sbjct: 61  HECQADMEKMESYAMKALQAGNESDARKFLERKTSLESKLS 101

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>LIAH_BACSU (O32201) Protein liaH|
          Length = 225

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 25/77 (32%), Positives = 41/77 (53%)
 Frame = +3

Query: 342 LSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLA 521
           L   E+P+ +L+Q V +M  D+ K +Q   +      + + KY+ A +       +AQLA
Sbjct: 18  LDKMENPKVMLNQYVRDMESDIAKAKQTIVKQHTIAYQFKKKYEEAAEVAGKRKNQAQLA 77

Query: 522 LQKGEEDLAREALKRRK 572
              GEE+LA++AL   K
Sbjct: 78  FDAGEEELAKKALTEMK 94

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>MUTS2_BACHD (Q9K8A0) MutS2 protein|
          Length = 785

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 26/78 (33%), Positives = 44/78 (56%)
 Frame = +3

Query: 321 RSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADW 500
           RS A AI       EKI++QA   +++D +++    A +  SQK  E+ ++ AE+A  + 
Sbjct: 488 RSNAFAISKRLGLEEKIIEQAKAHIDEDASQVESMIASLEQSQKSAESDWEEAEKALQE- 546

Query: 501 YRRAQLALQKGEEDLARE 554
             + +L LQK  +DL +E
Sbjct: 547 AEQLRLDLQKKLDDLEKE 564

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>POLG_TUMVQ (Q02597) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3163

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
 Frame = +3

Query: 327  YANAILSSFEDPEK--ILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADW 500
            Y  AI   +ED  +  +  QA   ++ DLT+           QK+ E + K  E+A+ + 
Sbjct: 2856 YLQAIFEDYEDGVEACVYHQAGETLDADLTE----------EQKQAEKEKKEREKAEKER 2905

Query: 501  YRRAQLALQKGEEDLAREALKRRK 572
             R+ QLA +KG +D+A+E  KR K
Sbjct: 2906 ERQKQLAFKKG-KDVAQEEGKRDK 2928

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>DDX27_MOUSE (Q921N6) Probable ATP-dependent RNA helicase DDX27 (EC 3.6.1.-)|
           (DEAD box protein 27)
          Length = 760

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 24/94 (25%), Positives = 51/94 (54%), Gaps = 10/94 (10%)
 Frame = +3

Query: 339 ILSSFEDPEKILDQ---AVLEMNDDLTKMRQATAQVLASQKRL-ENKYKAAEQADADWY- 503
           ++  F D  + L++   AVL++  +  +M+Q+ AQ+  +Q+ L + K  A ++ +  W+ 
Sbjct: 561 VILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQIDTAQRLLAKGKETADQEPERSWFQ 620

Query: 504 -----RRAQLALQKGEEDLAREALKRRKSYAENA 590
                ++ ++A    E DLA    K+RK + ++A
Sbjct: 621 TKEERKKEKIAKALQEFDLALRGKKKRKKFMKDA 654

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>DDX27_HUMAN (Q96GQ7) Probable ATP-dependent RNA helicase DDX27 (EC 3.6.1.-)|
           (DEAD box protein 27)
          Length = 796

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
 Frame = +3

Query: 381 AVLEMNDDLTKMRQATAQVLASQKRLE-NKYKAAEQADADWY------RRAQLALQKGEE 539
           AVL++  +  +M+Q+ AQ+  +++ LE  K    ++ +  W+      ++ ++A    E 
Sbjct: 612 AVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEKIAKALQEF 671

Query: 540 DLAREALKRRKSYAENA 590
           DLA    K+RK + ++A
Sbjct: 672 DLALRGKKKRKKFMKDA 688

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>GOGA3_MOUSE (P55937) Golgin subfamily A member 3 (Golgin-160) (Male-enhanced|
            antigen 2) (MEA-2)
          Length = 1487

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 23/85 (27%), Positives = 44/85 (51%)
 Frame = +3

Query: 282  IRSNLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLE 461
            ++S  FD+   +  + AN  L   +  E++  +A   + +   KM++  + + ++QK ++
Sbjct: 932  LQSLKFDKEQMIALTEANETLK--KQIEELQQEAKKAITEQKQKMKRLGSDLTSAQKEMK 989

Query: 462  NKYKAAEQADADWYRRAQLALQKGE 536
             K+KA E A +   RR Q AL   E
Sbjct: 990  TKHKAYENAVSILSRRLQEALASKE 1014

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>SAS6_BRARE (Q7ZVT3) Spindle assembly abnormal protein 6 homolog|
          Length = 627

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
 Frame = +3

Query: 276 NAIRSNLFDRLTRL-----------VRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQ 422
           N + +N F  LT L           ++ Y  + LSS ++ ++ L Q + +  +DLT+   
Sbjct: 124 NIVETNAFKHLTHLSLKLLPGSDTDIKKYLASCLSSVKEEKQQLQQKLRKTEEDLTR--- 180

Query: 423 ATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALK 563
              Q+  +Q+ L  K +  ++  ++W  +      +  +DL  E  K
Sbjct: 181 ---QLNYAQQTLSEKSRELDKLRSEWTSQTTSLSSRHMQDLTAEREK 224

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>CP46A_HUMAN (Q9Y6A2) Cytochrome p450 46A1 (EC 1.14.13.98) (Cholesterol|
           24-hydroxylase) (CH24H)
          Length = 500

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
 Frame = +3

Query: 363 EKILDQAVLEMNDDLTKMRQATAQVLASQKR----LENKYKAAEQADADWYRRAQLALQK 530
           +K L QAV  M + +T  R   A+ L  +++    +    +   Q   DW +R + AL++
Sbjct: 208 QKPLSQAVKLMLEGITASRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKR 267

Query: 531 GEE---DLAREALK 563
           GEE   D+  + LK
Sbjct: 268 GEEVPADILTQILK 281

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>RPOD_HELPJ (Q9ZMY3) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 681

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 19/83 (22%), Positives = 43/83 (51%)
 Frame = +3

Query: 303 RLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAE 482
           R+  L RS+ +   +S  DP+K  D    E N++  K+   + +     ++++  +KA +
Sbjct: 229 RVKELFRSFDDDDENSVSDPKKDDDSEEDEENEERKKV--VSEKDKKRVEKVQESFKALD 286

Query: 483 QADADWYRRAQLALQKGEEDLAR 551
           +A  +W +  +  + + E++L R
Sbjct: 287 KAKKEWLKALEAPIDEKEDELVR 309

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>FLIP1_RAT (Q8K4T4) Filamin-A-interacting protein 1 (FILIP)|
          Length = 1212

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = +3

Query: 261 NRFKCNAIRSNLFDRLTRLVRSYANAI------LSSFEDPEKILDQAVLEMNDDLTKMRQ 422
           ++ +C  +  NL ++   L +   N +      +   E  E  L++A L + DDLTK++ 
Sbjct: 444 SKSECTQLHLNL-EKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDLTKLKS 502

Query: 423 ATAQVLASQKRLENKYKAAEQ 485
            T  ++  +K +  K K  E+
Sbjct: 503 FTVMLVDERKNMMEKIKQEER 523

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>GOGA3_HUMAN (Q08378) Golgin subfamily A member 3 (Golgin-160) (Golgi|
            complex-associated protein of 170 kDa) (GCP170)
          Length = 1498

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 24/85 (28%), Positives = 43/85 (50%)
 Frame = +3

Query: 282  IRSNLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLE 461
            ++S  FD+   +  + AN  L   +  E++  +A   + +   KMR+  + + ++QK ++
Sbjct: 936  LQSLQFDKEQMVAVTEANEALK--KQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMK 993

Query: 462  NKYKAAEQADADWYRRAQLALQKGE 536
             K+KA E A     RR Q AL   E
Sbjct: 994  TKHKAYENAVGILSRRLQEALAAKE 1018

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>FLIP1_HUMAN (Q7Z7B0) Filamin-A-interacting protein 1 (FILIP)|
          Length = 1213

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = +3

Query: 261 NRFKCNAIRSNLFDRLTRLVRSYANAI------LSSFEDPEKILDQAVLEMNDDLTKMRQ 422
           ++ +C  +  NL ++   L +   N +      +   E  E  L++A L + DDLTK++ 
Sbjct: 445 SKSECTQLHLNL-EKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDLTKLKS 503

Query: 423 ATAQVLASQKRLENKYKAAEQ 485
            T  ++  +K +  K K  E+
Sbjct: 504 FTVMLVDERKNMMEKIKQEER 524

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>HIP1R_MOUSE (Q9JKY5) Huntingtin-interacting protein 1-related protein|
           (Hip1-related)
          Length = 1068

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 23/103 (22%), Positives = 52/103 (50%)
 Frame = +3

Query: 288 SNLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENK 467
           S L ++ + L+ ++A  +  + +  +++      +  +++ ++++  A  +   KR E++
Sbjct: 448 SKLKEKHSELINTHAELLRKNADTAKQLT--VTQQSQEEVARVKEQLAFQMEQAKR-ESE 504

Query: 468 YKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASS 596
            K  EQ+D     + +LA + GE   A+EAL R +      SS
Sbjct: 505 MKMEEQSDQLEKLKRELAARAGELARAQEALSRTEQSGSELSS 547

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>PESC_BRARE (P79741) Pescadillo|
          Length = 582

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
 Frame = +3

Query: 354 EDPEKILDQAVL-EMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQK 530
           ED E+  ++A L EM +  ++ +  + +V   + + EN+ +AAE+  A+  R A + ++K
Sbjct: 479 EDEEEAEEEANLAEMEEKRSQGKSLSVKVTPGKAKAENRARAAEEEKAEEKRLAIMMMKK 538

Query: 531 GEEDLAREAL--KRRK 572
            E+ L  + +  K+RK
Sbjct: 539 KEKYLYDKIMFGKKRK 554

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>SUBE_BACSU (P16396) Minor extracellular protease epr precursor (EC 3.4.21.-)|
          Length = 645

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 28/118 (23%), Positives = 48/118 (40%)
 Frame = +3

Query: 237 VQVRQSNVNRFKCNAIRSNLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKM 416
           V   QS + +   ++ +++L  RL ++  +       S    EK    A           
Sbjct: 508 VDSAQSAIGKLPASSEKTSLQKRLNKVKSTNLKTAQQSVSAAEKKSTDANAAKAQSAVNQ 567

Query: 417 RQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENA 590
            QA     A QKRL+   K    A+A     A+  ++K E+D      K+ K+ A++A
Sbjct: 568 LQAGKDKTALQKRLDKVKKKVAAAEAKKVETAKAKVKKAEKD----KTKKSKTSAQSA 621

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>FLIP1_MOUSE (Q9CS72) Filamin-A-interacting protein 1 (FILIP)|
          Length = 1211

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
 Frame = +3

Query: 261 NRFKCNAIRSNLFDRLTRLVRSYANAI------LSSFEDPEKILDQAVLEMNDDLTKMRQ 422
           ++ +C  +  NL ++   L +   N +      +   E  E  L++  L + DDLTK++ 
Sbjct: 445 SKSECTQLHLNL-EKEKNLTKDLLNELEVVKSRVKELECSESRLEKVELSLKDDLTKLKS 503

Query: 423 ATAQVLASQKRLENKYKAAEQ 485
            T  ++  +K +  K K  E+
Sbjct: 504 FTVMLVDERKNMMEKIKQEER 524

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>RMD1_YEAST (Q03441) Sporulation protein RMD1|
          Length = 430

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 495 QHQLVRQLCTCSRASFEMPRPVQWLAASLLNHHSSPRLPD 376
           +H L R    C+ +S+ M   V+WL      HH+ P+L D
Sbjct: 124 RHLLPRSTAYCTASSYNMKELVRWLKDCRKLHHTHPKLFD 163

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>CP46A_MOUSE (Q9WVK8) Cytochrome p450 46A1 (EC 1.14.13.98) (Cholesterol|
           24-hydroxylase) (CH24H)
          Length = 500

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
 Frame = +3

Query: 363 EKILDQAVLEMNDDLTKMRQATAQVLASQKR----LENKYKAAEQADADWYRRAQLALQK 530
           +K L QAV  M + ++  R   A+ +  +++    +    +   Q   DW +R + AL++
Sbjct: 208 QKPLSQAVKVMLEGISASRNTLAKFMPGKRKQLREIRESIRLLRQVGKDWVQRRREALKR 267

Query: 531 GEE---DLAREALK 563
           GE+   D+  + LK
Sbjct: 268 GEDMPADILTQILK 281

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>HOS4_YEAST (P40480) Protein HOS4|
          Length = 1083

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +3

Query: 321 RSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADW 500
           R  A   +   ED  ++L+ A  + N+D       T+    S+KRL++      Q   DW
Sbjct: 696 RRSATPRIEDEEDDTRMLNLADDDFNNDRDVKESTTSD---SRKRLDDNENVGTQYSLDW 752

Query: 501 YRRAQLALQKGEE 539
            +R   ALQ  E+
Sbjct: 753 KKRKTNALQDEEK 765

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>FLIDP_VIBPA (Q56705) Polar flagellar hook-associated protein 2 (HAP2) (Filament|
           cap protein) (Flagellar cap protein)
          Length = 670

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
 Frame = +3

Query: 300 DRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLA--------SQKR 455
           +R+     + +  +L S+E+PE  LD+  +E   D+     A +  L         +++ 
Sbjct: 298 ERIPGWTETASGTLLDSYEEPELELDEKAIEKAPDVPGWNNAASGTLTDSYVTTKEAKQL 357

Query: 456 LENKYKAAEQADADWYRRAQLALQKGEEDLAREALKR 566
           LE +    EQ  AD  +     +++GE  L+ E  K+
Sbjct: 358 LEQEKAEIEQKIADEKQELDAKVERGE--LSEEQAKQ 392

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>RPOD_HELPY (P55993) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 671

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 18/83 (21%), Positives = 42/83 (50%)
 Frame = +3

Query: 303 RLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAE 482
           R+  L RS+ +   +S  D +K  D    E N++  K+   + +     ++++  +KA +
Sbjct: 219 RVKELFRSFDDDDENSVSDSKKDEDNEEDEENEERKKV--VSEKDKKRVEKVQESFKALD 276

Query: 483 QADADWYRRAQLALQKGEEDLAR 551
           +A  +W +  +  + + E++L R
Sbjct: 277 KAKKEWLKALEAPIDEREDELVR 299

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>KIF3C_RAT (O55165) Kinesin-like protein KIF3C|
          Length = 796

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 19/77 (24%), Positives = 39/77 (50%)
 Frame = +3

Query: 354 EDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKG 533
           E+ +K+L++   +M +DL + +QAT  + A  K +E+K     +   D     Q  L+  
Sbjct: 486 EEKQKLLEEKE-KMLEDLKREQQATELLAAKYKAMESKLLIGGRNIMDHTNEQQKMLELK 544

Query: 534 EEDLAREALKRRKSYAE 584
            +++A +  + R+   E
Sbjct: 545 RQEIAEQKRREREMQQE 561

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>KIF3C_MOUSE (O35066) Kinesin-like protein KIF3C|
          Length = 796

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 19/77 (24%), Positives = 39/77 (50%)
 Frame = +3

Query: 354 EDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKG 533
           E+ +K+L++   +M +DL + +QAT  + A  K +E+K     +   D     Q  L+  
Sbjct: 486 EEKQKLLEEKE-KMLEDLRREQQATELLAAKYKAMESKLLIGGRNIMDHTNEQQKMLELK 544

Query: 534 EEDLAREALKRRKSYAE 584
            +++A +  + R+   E
Sbjct: 545 RQEIAEQKRREREMQQE 561

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>KIF3C_HUMAN (O14782) Kinesin-like protein KIF3C|
          Length = 793

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 19/77 (24%), Positives = 39/77 (50%)
 Frame = +3

Query: 354 EDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKG 533
           E+ +K+L++   +M +DL + +QAT  + A  K +E+K     +   D     Q  L+  
Sbjct: 484 EEKQKLLEEKE-KMLEDLRREQQATELLAAKYKAMESKLLIGGRNIMDHTNEQQKMLELK 542

Query: 534 EEDLAREALKRRKSYAE 584
            +++A +  + R+   E
Sbjct: 543 RQEIAEQKRREREMQQE 559

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>IF2_PSEHT (Q3IJ53) Translation initiation factor IF-2|
          Length = 886

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = +3

Query: 417 RQATAQVLASQKRLENKYKAAEQADADWYRRAQ-----LALQKGEEDLAREALKRRKSYA 581
           R+A A+  A QK++  +  A  + D     R Q      AL+K EE+  R+A + RK   
Sbjct: 156 RKADAERKAKQKQMTPEQSAKSEKDRIEAERLQKEAEEAALKKAEEEAKRQAEEARKLAE 215

Query: 582 ENAS 593
           EN++
Sbjct: 216 ENSA 219

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>HN1_HUMAN (Q9UK76) Hematological and neurological expressed 1 protein|
           (Androgen-regulated protein 2)
          Length = 154

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 420 QATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKS 575
           + T Q +   K   N +   E+  A W + A      G EDL    L+RR S
Sbjct: 36  EPTEQPVRKNKMASNIFGTPEENQASWAKSAGAKSSGGREDLESSGLQRRNS 87

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>DNMBP_HUMAN (Q6XZF7) Dynamin-binding protein (Scaffold protein Tuba)|
          Length = 1577

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 22/79 (27%), Positives = 38/79 (48%)
 Frame = +3

Query: 258  VNRFKCNAIRSNLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQV 437
            V+R+  + + +N  +R  RLV S  N +LS F  P K++ +   ++ D      +  A+ 
Sbjct: 1083 VHRYISDQLFTNFKERTERLVISPLNQLLSMFTGPHKLVQKRFDKLLDFYNCTER--AEK 1140

Query: 438  LASQKRLENKYKAAEQADA 494
            L  +K LE    A    +A
Sbjct: 1141 LKDKKTLEELQSARNNYEA 1159

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>GATB_FUSNN (Q8R680) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 481

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 13/59 (22%), Positives = 32/59 (54%)
 Frame = +3

Query: 309 TRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQ 485
           +++ +      L    DPE I+ +  L    D +++ +   +VLA+ +++ + YK+A++
Sbjct: 387 SKIAKEVFEIALDDSRDPEIIVKEKGLVQLSDTSEIEKMVDEVLANNQKMVDDYKSADE 445

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>PSA73_DROME (Q27575) Proteasome subunit alpha type 7-1B (EC 3.4.25.1)|
           (Testis-specific proteasome 28 kDa subunit 1B)
           (Testis-specific alpha4-t2 proteasome subunit)
          Length = 252

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -3

Query: 256 FDWRTCTARRETLPLRKEVLREAGRKLAVAGGVASLRLVGGALISIDS 113
           ++WR  T  R + P+R  + + A   L +A   A+++ +   L+S+ S
Sbjct: 156 YEWRANTTGRSSQPVRDYMEKHADEILTIADEAAAIKHIVRTLVSVSS 203

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>PARC_SALTY (P26973) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase|
           IV subunit A)
          Length = 752

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 366 KILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWY 503
           K+ +  +    D+L K R     +LAS++++    K   QADAD Y
Sbjct: 427 KLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAY 472

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>CLPB2_SYNPX (Q7U3T3) Chaperone clpB 2|
          Length = 900

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = +3

Query: 369 ILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLA 548
           ++D+A  ++  ++T   Q   +  A  +R+E    AAE+A  +   R QL  Q+ E    
Sbjct: 429 LIDEAAAQLKIEVTSKPQVVEEAEADLRRVELALLAAEEAPEE--ERIQLQRQRLEVSSR 486

Query: 549 REALKRR 569
            + L+RR
Sbjct: 487 LDDLRRR 493

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>CS029_HUMAN (Q8WUQ7) Protein C19orf29 (NY-REN-24 antigen)|
          Length = 690

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 23/84 (27%), Positives = 45/84 (53%)
 Frame = +3

Query: 327 YANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWYR 506
           Y+  +L++ E P   LD  VLE ++DL +++        S+++L+    A+E A+  ++R
Sbjct: 491 YSPRLLTAHELP---LDAHVLEPDEDLQRLQ-------LSRQQLQVTGDASESAEDIFFR 540

Query: 507 RAQLALQKGEEDLAREALKRRKSY 578
           RA+  + + E   + E     K+Y
Sbjct: 541 RAKEGMGQDEAQFSVEMPLTGKAY 564

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>KRHB2_HUMAN (Q9NSB4) Keratin, type II cuticular Hb2 (Hair keratin, type II Hb2)|
          Length = 513

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = +3

Query: 384 VLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQL-------ALQKGEED 542
           +LEMN  + +++Q T  V A + +LE     AEQ        A+        ALQK ++D
Sbjct: 336 ILEMNKLIQRLQQETENVKAQRCKLEGAIAEAEQQGEAALNDAKCKLAGLEEALQKAKQD 395

Query: 543 LA 548
           +A
Sbjct: 396 MA 397

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>PER3_HUMAN (P56645) Period circadian protein 3 (hPER3)|
          Length = 1201

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
 Frame = +3

Query: 141  TSLRLATPPATASFRPASLRTSFLNGSVSL-------RAVQVRQSNVNRFKCNAIRSNLF 299
            T L   +PP+ +  R  S  +   + S+ L       +  Q  Q + +  K     +   
Sbjct: 1042 TVLSTGSPPSESPSRTGSAASGSSDSSIYLTSSVYSSKISQNGQQSQDVQKKETFPNVAE 1101

Query: 300  DRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQK 452
            + + R++R     IL +++ PE++ +  + E  + L  MRQ   Q    QK
Sbjct: 1102 EPIWRMIRQTPERILMTYQVPERVKEVVLKEDLEKLESMRQQQPQFSHGQK 1152

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>POLG_TUMVJ (P89509) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3164

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +3

Query: 327  YANAILSSFEDPEK--ILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADW 500
            Y  AI   +ED  +  +  QA   ++  LT            QK+ E + K  E+A+ + 
Sbjct: 2857 YLQAIFEDYEDGTEACVYHQAGETLDAGLTD----------EQKQAEKEKKEREKAEKER 2906

Query: 501  YRRAQLALQKGEEDLARE 554
             R+ QLAL+KG+     E
Sbjct: 2907 ERQRQLALKKGKNAAQEE 2924


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,794,452
Number of Sequences: 219361
Number of extensions: 1237425
Number of successful extensions: 4780
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 4563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4777
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result