| Clone Name | basd17f19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121389.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128M19, full insert sequence Length = 3343 Score = 222 bits (112), Expect = 1e-54 Identities = 381/472 (80%), Gaps = 9/472 (1%) Strand = Plus / Plus Query: 110 ttgtcagagatcctcatttgtatgccttctcaattaggaaaggaagactggaggttaccg 169 |||| ||||| ||||| |||||| | |||||| | ||||| || | ||||||||| || | Sbjct: 2039 ttgttagagagcctcacttgtatacattctcattgaggaatgggaaactggaggtcactg 2098 Query: 170 agatcttcaatttttgccaagatgatttgttgactgaagacttgatgattcttgacacac 229 | || ||||| |||| |||||||||||| ||||||||||| ||||| ||||||| |||| Sbjct: 2099 aaattttcaacttttcacaagatgatttgctgactgaagacatgatggttcttgatacac 2158 Query: 230 acggggaggtctttatttggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgt 289 | ||||| |||||| ||||||| |||||||| ||||| | |||||||| || ||||| | Sbjct: 2159 atggggaagtctttgtttggatgggtcagtgtgtggatgctaaagagaagcagaaggcat 2218 Query: 290 tcgacattggccagaaatatatagagcatgcgatgtcgattgaagatctttccccgtatg 349 | || ||||||||||||||| ||| |||||| | | | ||| |||||| || ||| Sbjct: 2219 ttgaaattggccagaaatatgcagaacatgcggcggccttcgaatctctttctcctgatg 2278 Query: 350 taccactttacaaagtttctgaagggaatgagccatgcttcttcaagacatacttctctt 409 | || || |||||||| |||||||||||| ||||||||||||| || |||||||| | Sbjct: 2279 tgcctctgtacaaagtcgttgaagggaatgaaccatgcttcttcagaacttacttctcct 2338 Query: 410 gggatagcacaaaatctgtgattcatgggaattcattccaaaagaaactttcacttcttt 469 |||||| ||||| ||||||||||||||| |||||||| || ||||| ||||||||||||| Sbjct: 2339 gggataacacaagatctgtgattcatggaaattcatttcagaagaagctttcacttcttt 2398 Query: 470 ttggattacgctcagaggtaatttggggtgcatctaggagctctggtaatggtggaccca 529 | ||| | |||||||| | ||| ||||| ||| || ||| |||||||||| | Sbjct: 2399 tcggaatgcgctcaga---------gagtggatctaagagttcaggtgatggtggaccaa 2449 Query: 530 cacaaagggcatctgcattagccgctctatcatctgcattcaatccatcttc 581 | || |||||||| ||||| || ||||| |||||||||||||| |||||||| Sbjct: 2450 ctcagagggcatcagcattggctgctctttcatctgcattcaacccatcttc 2501 Score = 40.1 bits (20), Expect = 9.9 Identities = 52/62 (83%), Gaps = 1/62 (1%) Strand = Plus / Plus Query: 15 aaacattgcaaggnagggaacagnangttctgctttctggtttgctcttgatggaaaaca 74 ||||||||||||| ||||||| | | ||||| || ||||||||||||| |||||| || Sbjct: 1948 aaacattgcaagg-agggaactgagagctctgccttttggtttgctcttggtggaaagca 2006 Query: 75 ga 76 || Sbjct: 2007 ga 2008
>dbj|AK103910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150O18, full insert sequence Length = 1711 Score = 222 bits (112), Expect = 1e-54 Identities = 381/472 (80%), Gaps = 9/472 (1%) Strand = Plus / Plus Query: 110 ttgtcagagatcctcatttgtatgccttctcaattaggaaaggaagactggaggttaccg 169 |||| ||||| ||||| |||||| | |||||| | ||||| || | ||||||||| || | Sbjct: 239 ttgttagagagcctcacttgtatacattctcattgaggaatgggaaactggaggtcactg 298 Query: 170 agatcttcaatttttgccaagatgatttgttgactgaagacttgatgattcttgacacac 229 | || ||||| |||| |||||||||||| ||||||||||| ||||| ||||||| |||| Sbjct: 299 aaattttcaacttttcacaagatgatttgctgactgaagacatgatggttcttgatacac 358 Query: 230 acggggaggtctttatttggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgt 289 | ||||| |||||| ||||||| |||||||| ||||| | |||||||| || ||||| | Sbjct: 359 atggggaagtctttgtttggatgggtcagtgtgtggatgctaaagagaagcagaaggcat 418 Query: 290 tcgacattggccagaaatatatagagcatgcgatgtcgattgaagatctttccccgtatg 349 | || ||||||||||||||| ||| |||||| | | | ||| |||||| || ||| Sbjct: 419 ttgaaattggccagaaatatgcagaacatgcggcggccttcgaatctctttctcctgatg 478 Query: 350 taccactttacaaagtttctgaagggaatgagccatgcttcttcaagacatacttctctt 409 | || || |||||||| |||||||||||| ||||||||||||| || |||||||| | Sbjct: 479 tgcctctgtacaaagtcgttgaagggaatgaaccatgcttcttcagaacttacttctcct 538 Query: 410 gggatagcacaaaatctgtgattcatgggaattcattccaaaagaaactttcacttcttt 469 |||||| ||||| ||||||||||||||| |||||||| || ||||| ||||||||||||| Sbjct: 539 gggataacacaagatctgtgattcatggaaattcatttcagaagaagctttcacttcttt 598 Query: 470 ttggattacgctcagaggtaatttggggtgcatctaggagctctggtaatggtggaccca 529 | ||| | |||||||| | ||| ||||| ||| || ||| |||||||||| | Sbjct: 599 tcggaatgcgctcaga---------gagtggatctaagagttcaggtgatggtggaccaa 649 Query: 530 cacaaagggcatctgcattagccgctctatcatctgcattcaatccatcttc 581 | || |||||||| ||||| || ||||| |||||||||||||| |||||||| Sbjct: 650 ctcagagggcatcagcattggctgctctttcatctgcattcaacccatcttc 701 Score = 40.1 bits (20), Expect = 9.9 Identities = 52/62 (83%), Gaps = 1/62 (1%) Strand = Plus / Plus Query: 15 aaacattgcaaggnagggaacagnangttctgctttctggtttgctcttgatggaaaaca 74 ||||||||||||| ||||||| | | ||||| || ||||||||||||| |||||| || Sbjct: 148 aaacattgcaagg-agggaactgagagctctgccttttggtttgctcttggtggaaagca 206 Query: 75 ga 76 || Sbjct: 207 ga 208
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 97.6 bits (49), Expect = 5e-17 Identities = 100/117 (85%) Strand = Plus / Plus Query: 187 caagatgatttgttgactgaagacttgatgattcttgacacacacggggaggtctttatt 246 |||||||||||| ||||||||||| ||||| ||||||| ||||| ||||| |||||| || Sbjct: 13623143 caagatgatttgctgactgaagacatgatggttcttgatacacatggggaagtctttgtt 13623202 Query: 247 tggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgttcgacattggccag 303 ||||| |||||||| ||||| | |||||||| || ||||| || || ||||||||| Sbjct: 13623203 tggatgggtcagtgtgtggatgctaaagagaagcagaaggcatttgaaattggccag 13623259 Score = 65.9 bits (33), Expect = 2e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 501 atctaggagctctggtaatggtggacccacacaaagggcatctgcattagccgctctatc 560 ||||| ||| || ||| |||||||||| || || |||||||| ||||| || ||||| || Sbjct: 13624385 atctaagagttcaggtgatggtggaccaactcagagggcatcagcattggctgctctttc 13624444 Query: 561 atctgcattcaatccatcttc 581 |||||||||||| |||||||| Sbjct: 13624445 atctgcattcaacccatcttc 13624465 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 429 gattcatgggaattcattccaaaagaaactttcacttctttttggattacgctcagaggt 488 ||||||||| |||||||| || ||||| |||||||||||||| ||| | ||||||||||| Sbjct: 13624188 gattcatggaaattcatttcagaagaagctttcacttcttttcggaatgcgctcagaggt 13624247 Query: 489 a 489 | Sbjct: 13624248 a 13624248 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 369 tgaagggaatgagccatgcttcttcaagacatacttctcttgggatagcacaaaatctgt 428 |||||||||||| ||||||||||||| || |||||||| ||||||| ||||| |||||| Sbjct: 13623404 tgaagggaatgaaccatgcttcttcagaacttacttctcctgggataacacaagatctgt 13623463 Query: 429 g 429 | Sbjct: 13623464 g 13623464 Score = 40.1 bits (20), Expect = 9.9 Identities = 52/62 (83%), Gaps = 1/62 (1%) Strand = Plus / Plus Query: 15 aaacattgcaaggnagggaacagnangttctgctttctggtttgctcttgatggaaaaca 74 ||||||||||||| ||||||| | | ||||| || ||||||||||||| |||||| || Sbjct: 13622757 aaacattgcaagg-agggaactgagagctctgccttttggtttgctcttggtggaaagca 13622815 Query: 75 ga 76 || Sbjct: 13622816 ga 13622817 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 attggccagaaatatataga 314 |||||||||||||||||||| Sbjct: 2063099 attggccagaaatatataga 2063080
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 97.6 bits (49), Expect = 5e-17 Identities = 100/117 (85%) Strand = Plus / Plus Query: 187 caagatgatttgttgactgaagacttgatgattcttgacacacacggggaggtctttatt 246 |||||||||||| ||||||||||| ||||| ||||||| ||||| ||||| |||||| || Sbjct: 13618118 caagatgatttgctgactgaagacatgatggttcttgatacacatggggaagtctttgtt 13618177 Query: 247 tggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgttcgacattggccag 303 ||||| |||||||| ||||| | |||||||| || ||||| || || ||||||||| Sbjct: 13618178 tggatgggtcagtgtgtggatgctaaagagaagcagaaggcatttgaaattggccag 13618234 Score = 65.9 bits (33), Expect = 2e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 501 atctaggagctctggtaatggtggacccacacaaagggcatctgcattagccgctctatc 560 ||||| ||| || ||| |||||||||| || || |||||||| ||||| || ||||| || Sbjct: 13619360 atctaagagttcaggtgatggtggaccaactcagagggcatcagcattggctgctctttc 13619419 Query: 561 atctgcattcaatccatcttc 581 |||||||||||| |||||||| Sbjct: 13619420 atctgcattcaacccatcttc 13619440 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 429 gattcatgggaattcattccaaaagaaactttcacttctttttggattacgctcagaggt 488 ||||||||| |||||||| || ||||| |||||||||||||| ||| | ||||||||||| Sbjct: 13619163 gattcatggaaattcatttcagaagaagctttcacttcttttcggaatgcgctcagaggt 13619222 Query: 489 a 489 | Sbjct: 13619223 a 13619223 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 369 tgaagggaatgagccatgcttcttcaagacatacttctcttgggatagcacaaaatctgt 428 |||||||||||| ||||||||||||| || |||||||| ||||||| ||||| |||||| Sbjct: 13618379 tgaagggaatgaaccatgcttcttcagaacttacttctcctgggataacacaagatctgt 13618438 Query: 429 g 429 | Sbjct: 13618439 g 13618439 Score = 40.1 bits (20), Expect = 9.9 Identities = 52/62 (83%), Gaps = 1/62 (1%) Strand = Plus / Plus Query: 15 aaacattgcaaggnagggaacagnangttctgctttctggtttgctcttgatggaaaaca 74 ||||||||||||| ||||||| | | ||||| || ||||||||||||| |||||| || Sbjct: 13617732 aaacattgcaagg-agggaactgagagctctgccttttggtttgctcttggtggaaagca 13617790 Query: 75 ga 76 || Sbjct: 13617791 ga 13617792 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 attggccagaaatatataga 314 |||||||||||||||||||| Sbjct: 2063111 attggccagaaatatataga 2063092
>gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0033D20, from chromosome 3, complete sequence Length = 128707 Score = 97.6 bits (49), Expect = 5e-17 Identities = 100/117 (85%) Strand = Plus / Plus Query: 187 caagatgatttgttgactgaagacttgatgattcttgacacacacggggaggtctttatt 246 |||||||||||| ||||||||||| ||||| ||||||| ||||| ||||| |||||| || Sbjct: 13815 caagatgatttgctgactgaagacatgatggttcttgatacacatggggaagtctttgtt 13874 Query: 247 tggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgttcgacattggccag 303 ||||| |||||||| ||||| | |||||||| || ||||| || || ||||||||| Sbjct: 13875 tggatgggtcagtgtgtggatgctaaagagaagcagaaggcatttgaaattggccag 13931 Score = 65.9 bits (33), Expect = 2e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 501 atctaggagctctggtaatggtggacccacacaaagggcatctgcattagccgctctatc 560 ||||| ||| || ||| |||||||||| || || |||||||| ||||| || ||||| || Sbjct: 15057 atctaagagttcaggtgatggtggaccaactcagagggcatcagcattggctgctctttc 15116 Query: 561 atctgcattcaatccatcttc 581 |||||||||||| |||||||| Sbjct: 15117 atctgcattcaacccatcttc 15137 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 429 gattcatgggaattcattccaaaagaaactttcacttctttttggattacgctcagaggt 488 ||||||||| |||||||| || ||||| |||||||||||||| ||| | ||||||||||| Sbjct: 14860 gattcatggaaattcatttcagaagaagctttcacttcttttcggaatgcgctcagaggt 14919 Query: 489 a 489 | Sbjct: 14920 a 14920 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 369 tgaagggaatgagccatgcttcttcaagacatacttctcttgggatagcacaaaatctgt 428 |||||||||||| ||||||||||||| || |||||||| ||||||| ||||| |||||| Sbjct: 14076 tgaagggaatgaaccatgcttcttcagaacttacttctcctgggataacacaagatctgt 14135 Query: 429 g 429 | Sbjct: 14136 g 14136 Score = 40.1 bits (20), Expect = 9.9 Identities = 52/62 (83%), Gaps = 1/62 (1%) Strand = Plus / Plus Query: 15 aaacattgcaaggnagggaacagnangttctgctttctggtttgctcttgatggaaaaca 74 ||||||||||||| ||||||| | | ||||| || ||||||||||||| |||||| || Sbjct: 13429 aaacattgcaagg-agggaactgagagctctgccttttggtttgctcttggtggaaagca 13487 Query: 75 ga 76 || Sbjct: 13488 ga 13489
>gb|AY104332.1| Zea mays PCO109929 mRNA sequence Length = 989 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 369 tgaagggaatgagccatgcttcttcaagacatacttctcttgggatagcaca 420 |||||||||||| || |||||||||| ||||| |||||| |||||||||||| Sbjct: 139 tgaagggaatgaaccttgcttcttcaggacattcttctcctgggatagcaca 190 Score = 60.0 bits (30), Expect = 1e-05 Identities = 66/78 (84%) Strand = Plus / Plus Query: 507 gagctctggtaatggtggacccacacaaagggcatctgcattagccgctctatcatctgc 566 |||||| ||| |||||||||| || ||||||||||| || || || ||||| ||||| || Sbjct: 268 gagctcaggtgatggtggaccaactcaaagggcatcagccttggcagctctttcatccgc 327 Query: 567 attcaatccatcttcgca 584 ||| |||||||| ||||| Sbjct: 328 attgaatccatcgtcgca 345 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 247 tggattggtcagtgcgtggaaccaaaagagaaacaaaaggcgttcgacattggccagaaa 306 ||||| |||||||||||||| ||||||| ||||| || || || ||||||||||||||| Sbjct: 17 tggatgggtcagtgcgtggagacaaaagaaaaacagaaagcatttgacattggccagaaa 76 Query: 307 ta 308 || Sbjct: 77 ta 78
>gb|AY106157.1| Zea mays PCO066687 mRNA sequence Length = 989 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 625 gatgggcccactcaacgtgcctctgcactggctgctttgtccaatgca 672 ||||| ||||||||||||||||| ||||||||||| || || |||||| Sbjct: 8 gatggacccactcaacgtgcctcagcactggctgccttatctaatgca 55
>gb|AF088901.1|AF088901 Lilium longiflorum actin bundling protein ABP135 (Y5-7) mRNA, complete cds Length = 3295 Score = 50.1 bits (25), Expect = 0.010 Identities = 52/61 (85%) Strand = Plus / Plus Query: 521 gtggacccacacaaagggcatctgcattagccgctctatcatctgcattcaatccatctt 580 ||||||| || ||||| ||||| || ||||| ||| |||| |||||||||||||| |||| Sbjct: 2401 gtggaccgactcaaagagcatcagccttagcagctttatcttctgcattcaatccttctt 2460 Query: 581 c 581 | Sbjct: 2461 c 2461 Score = 44.1 bits (22), Expect = 0.63 Identities = 40/46 (86%) Strand = Plus / Plus Query: 347 atgtaccactttacaaagtttctgaagggaatgagccatgcttctt 392 ||||||| ||||| |||||| | |||||||||||||| || ||||| Sbjct: 2221 atgtaccgctttataaagttaccgaagggaatgagccgtgtttctt 2266 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 caagatgatttgttgactga 206 |||||||||||||||||||| Sbjct: 2061 caagatgatttgttgactga 2080
>ref|NM_129738.3| Arabidopsis thaliana VLN2 (VILLIN 2); actin binding AT2G41740 (VLN2) mRNA, complete cds Length = 3390 Score = 44.1 bits (22), Expect = 0.63 Identities = 40/46 (86%) Strand = Plus / Plus Query: 369 tgaagggaatgagccatgcttcttcaagacatacttctcttgggat 414 ||||||||| || ||||||||||||| || ||||| ||||||||| Sbjct: 2321 tgaagggaacgaaccatgcttcttcaccacttacttttcttgggat 2366
>gb|AC161260.2| Mus musculus BAC clone RP23-448A11 from chromosome 9, complete sequence Length = 190608 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 447 ccaaaagaaactttcacttctttttg 472 |||||| ||||||||||||||||||| Sbjct: 59100 ccaaaacaaactttcacttctttttg 59075
>gb|BC057086.1| Mus musculus LIM domain only 3, mRNA (cDNA clone MGC:67530 IMAGE:5720992), complete cds Length = 1245 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 124 catttgtatgccttctcaatta 145 |||||||||||||||||||||| Sbjct: 441 catttgtatgccttctcaatta 420
>ref|XM_539381.2| PREDICTED: Canis familiaris similar to smoothened (LOC482262), mRNA Length = 2163 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 56 ttgctcttgatggaaaacagag 77 |||||||||||||||||||||| Sbjct: 1088 ttgctcttgatggaaaacagag 1067
>gb|AY133782.1| Arabidopsis thaliana clone U11765 putative villin 2 protein (At2g41740) mRNA, complete cds Length = 2962 Score = 44.1 bits (22), Expect = 0.63 Identities = 40/46 (86%) Strand = Plus / Plus Query: 369 tgaagggaatgagccatgcttcttcaagacatacttctcttgggat 414 ||||||||| || ||||||||||||| || ||||| ||||||||| Sbjct: 2109 tgaagggaacgaaccatgcttcttcaccacttacttttcttgggat 2154
>gb|AY080601.1| Arabidopsis thaliana putative villin 2 protein (At2g41740) mRNA, complete cds Length = 3383 Score = 44.1 bits (22), Expect = 0.63 Identities = 40/46 (86%) Strand = Plus / Plus Query: 369 tgaagggaatgagccatgcttcttcaagacatacttctcttgggat 414 ||||||||| || ||||||||||||| || ||||| ||||||||| Sbjct: 2312 tgaagggaacgaaccatgcttcttcaccacttacttttcttgggat 2357
>gb|AC002339.3| Arabidopsis thaliana chromosome 2 clone T11A7 map CIC11C08, complete sequence Length = 91071 Score = 44.1 bits (22), Expect = 0.63 Identities = 40/46 (86%) Strand = Plus / Plus Query: 369 tgaagggaatgagccatgcttcttcaagacatacttctcttgggat 414 ||||||||| || ||||||||||||| || ||||| ||||||||| Sbjct: 67872 tgaagggaacgaaccatgcttcttcaccacttacttttcttgggat 67917
>gb|AF081202.1|AF081202 Arabidopsis thaliana villin 2 (VLN2) mRNA, complete cds Length = 3107 Score = 44.1 bits (22), Expect = 0.63 Identities = 40/46 (86%) Strand = Plus / Plus Query: 369 tgaagggaatgagccatgcttcttcaagacatacttctcttgggat 414 ||||||||| || ||||||||||||| || ||||| ||||||||| Sbjct: 2109 tgaagggaacgaaccatgcttcttcaccacttacttttcttgggat 2154
>emb|CT010508.10| Mouse DNA sequence from clone RP23-250G8 on chromosome 9, complete sequence Length = 223547 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Plus Query: 447 ccaaaagaaactttcacttctttttg 472 |||||| ||||||||||||||||||| Sbjct: 60684 ccaaaacaaactttcacttctttttg 60709
>emb|CR378662.1| M.truncatula DNA sequence from clone MTH2-41N19 on chromosome 3, complete sequence Length = 119227 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 47 ctttctggtttgctcttgatggaaa 71 |||||||||||||||| |||||||| Sbjct: 101614 ctttctggtttgctctcgatggaaa 101590
>emb|AL049575.7|HSDJ316D7 Human DNA sequence from clone RP1-316D7 on chromosome 11p13 Contains part of the gene for G2 protein, ESTs, STSs and GSSs, complete sequence Length = 94835 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 643 gcctctgcactggctgctttg 663 ||||||||||||||||||||| Sbjct: 3185 gcctctgcactggctgctttg 3205
>gb|AY045572.1| Nicotiana tabacum bZIP transcription factor BZI-4 mRNA, complete cds Length = 563 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 tcttcaatttttgccaagatg 193 ||||||||||||||||||||| Sbjct: 358 tcttcaatttttgccaagatg 338
>gb|AC153849.8| Mus musculus BAC RP23-97L11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205220 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 44 ctgctttctggtttgctcttgatgg 68 |||||||||||||||||||| |||| Sbjct: 29964 ctgctttctggtttgctcttcatgg 29988
>gb|AC157093.4| Mus musculus 6 BAC RP24-338D12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 185068 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 44 ctgctttctggtttgctcttgatgg 68 |||||||||||||||||||| |||| Sbjct: 162144 ctgctttctggtttgctcttcatgg 162168
>emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chromosome X, complete sequence Length = 227918 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 44 ctgctttctggtttgctcttgatgg 68 |||||||||||||||||||| |||| Sbjct: 23396 ctgctttctggtttgctcttcatgg 23420
>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003A09, complete sequence Length = 167222 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 attggccagaaatatataga 314 |||||||||||||||||||| Sbjct: 100522 attggccagaaatatataga 100503
>gb|AC154494.2| Mus musculus BAC clone RP24-111G24 from chromosome 9, complete sequence Length = 182959 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 tggaaccaaaagagaaacaa 282 |||||||||||||||||||| Sbjct: 22844 tggaaccaaaagagaaacaa 22863
>gb|AC129573.16| Mus musculus chromosome 6, clone RP23-457B5, complete sequence Length = 178159 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 aaaagagaaacaaaaggcgt 289 |||||||||||||||||||| Sbjct: 152236 aaaagagaaacaaaaggcgt 152217
>gb|AE006302.1| Lactococcus lactis subsp. lactis IL1403 section 64 of 218 of the complete genome Length = 11237 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 ctttcacttctttttggatt 476 |||||||||||||||||||| Sbjct: 7845 ctttcacttctttttggatt 7826
>gb|AC115867.12| Mus musculus chromosome 6, clone RP24-326P23, complete sequence Length = 162067 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 647 ctgcactggctgctttgtcc 666 |||||||||||||||||||| Sbjct: 518 ctgcactggctgctttgtcc 537
>gb|AC124128.11| Mus musculus chromosome 6, clone RP23-158O11, complete sequence Length = 208907 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 aaaagagaaacaaaaggcgt 289 |||||||||||||||||||| Sbjct: 37868 aaaagagaaacaaaaggcgt 37849
>gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosome 10, complete sequence Length = 219818 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 attcatgggaattcattcca 449 |||||||||||||||||||| Sbjct: 65747 attcatgggaattcattcca 65728
>gb|AC122429.3| Mus musculus BAC clone RP24-175I3 from chromosome 6, complete sequence Length = 188069 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 647 ctgcactggctgctttgtcc 666 |||||||||||||||||||| Sbjct: 119607 ctgcactggctgctttgtcc 119626
>ref|XM_546150.2| PREDICTED: Canis familiaris similar to sphingosine-1-phosphate lyase 1 (LOC489032), mRNA Length = 2179 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 653 tggctgctttgtccaatgcagcat 676 ||||||||||||| |||||||||| Sbjct: 835 tggctgctttgtcaaatgcagcat 812
>gb|AC064862.6| Homo sapiens BAC clone RP11-368M16 from 7, complete sequence Length = 175895 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 385 tgcttcttcaagacatacttctct 408 |||||||||||| ||||||||||| Sbjct: 134482 tgcttcttcaaggcatacttctct 134505
>gb|AC146035.2| Pan troglodytes BAC clone RP43-16G11 from 7, complete sequence Length = 153649 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 tgcttcttcaagacatacttctct 408 |||||||||||| ||||||||||| Sbjct: 4054 tgcttcttcaaggcatacttctct 4031
>emb|AJ577853.1|NTA577853 Nicotiana tabacum partial mRNA for villin 2 (vln2 gene) Length = 2000 Score = 40.1 bits (20), Expect = 9.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 46 gctttctggtttgctcttgatggaaaacagagctatacaagcaa 89 ||||||||||||||| ||| |||||||| || ||||| ||||| Sbjct: 500 gctttctggtttgctgttggaggaaaacaaagttataccagcaa 543
>emb|AJ577852.1|NTA577852 Nicotiana tabacum partial mRNA for villin 1 (vln1 gene) Length = 1938 Score = 40.1 bits (20), Expect = 9.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 47 ctttctggtttgctcttgatggaaaaca 74 |||||||||||||||||| |||||||| Sbjct: 632 ctttctggtttgctcttggaggaaaaca 659
>emb|AL442064.10| Human DNA sequence from clone RP11-272D1 on chromosome 9 Contains the 3' end of the EDG2 gene for endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 2, complete sequence Length = 169905 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 accaaaagagaaacaaaagg 286 |||||||||||||||||||| Sbjct: 103601 accaaaagagaaacaaaagg 103620
>emb|AL121904.13|HSDJ410C9 Human DNA sequence from clone RP3-410C9 on chromosome 20 Contains two novel genes and two CpG islands, complete sequence Length = 109849 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 385 tgcttcttcaagacatacttctct 408 |||||||||||| ||||||||||| Sbjct: 4372 tgcttcttcaaggcatacttctct 4395
>ref|XM_779113.1| PREDICTED: Strongylocentrotus purpuratus similar to Neurogenic locus notch homolog protein 1 precursor (Notch 1) (Motch A) (mT14) (p300) (LOC578978), mRNA Length = 14113 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 642 tgcctctgcactggctgctttgtc 665 |||||||||||||| ||||||||| Sbjct: 6823 tgcctctgcactggatgctttgtc 6846
>emb|BX548069.7| Zebrafish DNA sequence from clone CH211-238G23 in linkage group 18, complete sequence Length = 142514 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 563 ctgcattcaatccatcttcg 582 |||||||||||||||||||| Sbjct: 120853 ctgcattcaatccatcttcg 120872
>gb|AC128649.5| Homo sapiens 12 BAC RP11-728G4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167071 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 caaagtttctgaagggaatg 379 |||||||||||||||||||| Sbjct: 94408 caaagtttctgaagggaatg 94389
>gb|AC128657.2| Homo sapiens 12 BAC RP11-1079J22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 60001 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 caaagtttctgaagggaatg 379 |||||||||||||||||||| Sbjct: 14955 caaagtttctgaagggaatg 14974
>gb|AC112481.2| Homo sapiens 12 BAC RP11-20L19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 116996 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 445 ttccaaaagaaactttcacttctt 468 ||||| |||||||||||||||||| Sbjct: 107003 ttccataagaaactttcacttctt 106980
>gb|AC107926.6| Homo sapiens, clone RP11-381P6, complete sequence Length = 176040 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 tgcttcttcaagacatacttctct 408 |||||||||||| ||||||||||| Sbjct: 100184 tgcttcttcaaggcatacttctct 100161
>gb|AC090774.6| Homo sapiens chromosome 17, clone RP11-344E13, complete sequence Length = 207418 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 tgcttcttcaagacatacttctct 408 |||||||||||| ||||||||||| Sbjct: 81068 tgcttcttcaaggcatacttctct 81045
>dbj|AB224140.1| Aspergillus oryzae cDNA, contig sequence: AoEST0982 Length = 606 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 gagccatgcttcttcaagac 398 |||||||||||||||||||| Sbjct: 502 gagccatgcttcttcaagac 521
>gb|AC060226.39| Homo sapiens 12 BAC RP11-101P14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 132604 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 cctcatttgtatgccttctc 140 |||||||||||||||||||| Sbjct: 34568 cctcatttgtatgccttctc 34549
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 gagccatgcttcttcaagac 398 |||||||||||||||||||| Sbjct: 519448 gagccatgcttcttcaagac 519429
>gb|AC093848.2| Homo sapiens BAC clone RP11-486G21 from 4, complete sequence Length = 175064 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 gcctctgcactggctgcttt 662 |||||||||||||||||||| Sbjct: 109382 gcctctgcactggctgcttt 109401
>gb|AC115811.12| Mus musculus chromosome 5, clone RP23-429M21, complete sequence Length = 180812 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 ttcatgggaattcattccaa 450 |||||||||||||||||||| Sbjct: 21638 ttcatgggaattcattccaa 21657
>gb|AC090196.5| Homo sapiens chromosome 8, clone RP11-766A10, complete sequence Length = 175708 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tttacaaagtttctgaaggg 375 |||||||||||||||||||| Sbjct: 11977 tttacaaagtttctgaaggg 11958
>gb|AC093570.30| Mus musculus strain C57BL/6J chromosome 5 clone rp23-115a12, complete sequence Length = 203838 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 645 ctctgcactggctgctttgt 664 |||||||||||||||||||| Sbjct: 147217 ctctgcactggctgctttgt 147198
>gb|AC018799.8| Homo sapiens BAC clone RP11-125N8 from 2, complete sequence Length = 151107 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 gatgtcgattgaagatctttcccc 344 |||||||||| ||||||||||||| Sbjct: 106940 gatgtcgatttaagatctttcccc 106917
>gb|AC096547.1| Homo sapiens BAC clone CTD-2016K1 from 2, complete sequence Length = 129164 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 atagcacaaaatctgtgatt 432 |||||||||||||||||||| Sbjct: 21391 atagcacaaaatctgtgatt 21410
>emb|Y15177.1|DCY15177 Daucus carota DNA fragment containing transposon-like CACTA/TAGTG repeats and nested inverted repeats Length = 5334 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 686 ctccgcagcagaagcaggtt 705 |||||||||||||||||||| Sbjct: 1346 ctccgcagcagaagcaggtt 1365
>emb|CT027665.2| Medicago truncatula chromosome 5 clone mth2-69e15, COMPLETE SEQUENCE Length = 130069 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 gaaccaaaagagaaacaaaa 284 |||||||||||||||||||| Sbjct: 33834 gaaccaaaagagaaacaaaa 33853
>gb|AC155928.2| Mus musculus BAC clone RP24-70N20 from 9, complete sequence Length = 239304 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 tggaaccaaaagagaaacaa 282 |||||||||||||||||||| Sbjct: 174786 tggaaccaaaagagaaacaa 174805
>gb|AC007157.6|AC007157 Homo sapiens, clone hRPK.78_A_1, complete sequence Length = 152937 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 accaaaagagaaacaaaagg 286 |||||||||||||||||||| Sbjct: 2148 accaaaagagaaacaaaagg 2167
>gb|AC135187.3| Mus musculus BAC clone RP24-263A3 from 5, complete sequence Length = 176333 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 accaaaagagaaacaaaagg 286 |||||||||||||||||||| Sbjct: 136085 accaaaagagaaacaaaagg 136066
>gb|AC138365.16| Mus musculus chromosome 5, clone RP23-262B5, complete sequence Length = 172631 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 ttcatgggaattcattccaa 450 |||||||||||||||||||| Sbjct: 167899 ttcatgggaattcattccaa 167918
>emb|AL606974.9| Mouse DNA sequence from clone RP23-39E21 on chromosome 4, complete sequence Length = 232587 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 tgccttctcaattaggaaag 151 |||||||||||||||||||| Sbjct: 43921 tgccttctcaattaggaaag 43902
>emb|AL833796.4| Mouse DNA sequence from clone RP23-361A12 on chromosome X, complete sequence Length = 160626 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 aaaagaaactttcacttctt 468 |||||||||||||||||||| Sbjct: 144013 aaaagaaactttcacttctt 144032
>emb|AL670670.7| Mouse DNA sequence from clone RP23-234O7 on chromosome X, complete sequence Length = 91811 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 tctgctttctggtttgctct 62 |||||||||||||||||||| Sbjct: 69307 tctgctttctggtttgctct 69288 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,218,188 Number of Sequences: 3902068 Number of extensions: 7218188 Number of successful extensions: 140787 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 140447 Number of HSP's gapped (non-prelim): 340 length of query: 723 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 700 effective length of database: 17,143,297,704 effective search space: 12000308392800 effective search space used: 12000308392800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)