ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd16p24 |
|---|---|
| Clone Library Name | barley_pub |
>GLTP_MOUSE (Q9JL62) Glycolipid transfer protein (GLTP)| Length = 208 Score = 50.1 bits (118), Expect = 2e-06 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Frame = +1 Query: 172 PFLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKK 348 PFL+ + P D G+ + +K+DI GNIT+++ Y +DPAK++ L +++ E Sbjct: 21 PFLEAVAHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTDPAKFKTLQNILEVEKGMY 80 Query: 349 TAKGSS-SCTNGLLWLTRAMDFL 414 A+ T LLWL R + F+ Sbjct: 81 GAEWPKVGATLALLWLKRGLRFI 103
>GLTP_HUMAN (Q9NZD2) Glycolipid transfer protein (GLTP)| Length = 208 Score = 50.1 bits (118), Expect = 2e-06 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Frame = +1 Query: 172 PFLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKK 348 PFL+ + P D G+ + +K+DI GNIT+++ Y ++PAK+ L +++ E E Sbjct: 21 PFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMY 80 Query: 349 TAKGSS-SCTNGLLWLTRAMDFL 414 A+ T L+WL R + F+ Sbjct: 81 GAEWPKVGATLALMWLKRGLRFI 103
>GLTP_PIG (P68266) Glycolipid transfer protein (GLTP)| Length = 208 Score = 48.5 bits (114), Expect = 7e-06 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%) Frame = +1 Query: 172 PFLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKK 348 PFL+ + P D G+ + +K+DI GNIT+++ Y ++P K+ L +++ E E Sbjct: 21 PFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMY 80 Query: 349 TAKGSS-SCTNGLLWLTRAMDFL 414 A+ T L+WL R + F+ Sbjct: 81 GAEWPKVGATLALMWLKRGLRFI 103
>GLTP_BOVIN (P68265) Glycolipid transfer protein (GLTP)| Length = 208 Score = 48.5 bits (114), Expect = 7e-06 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%) Frame = +1 Query: 172 PFLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKK 348 PFL+ + P D G+ + +K+DI GNIT+++ Y ++P K+ L +++ E E Sbjct: 21 PFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMY 80 Query: 349 TAKGSS-SCTNGLLWLTRAMDFL 414 A+ T L+WL R + F+ Sbjct: 81 GAEWPKVGATLALMWLKRGLRFI 103
>CP19A_ORYLA (Q92087) Cytochrome P450 19A1 (EC 1.14.14.1) (Aromatase) (CYPXIX)| (Estrogen synthetase) (P-450AROM) Length = 518 Score = 31.2 bits (69), Expect = 1.2 Identities = 14/44 (31%), Positives = 30/44 (68%), Gaps = 1/44 (2%) Frame = -2 Query: 275 SNLVIFPPI-SLFTIAIAAPNLSKTGKICLQTSRKGLDSMTPLS 147 +N+ ++ I + FT A+ PNL +T ++C+ +++ LD+++ LS Sbjct: 150 NNVALWKKIRTYFTKALTGPNLQQTVEVCVTSTQTHLDNLSSLS 193
>TILS_STRT2 (Q5M6K9) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 421 Score = 30.8 bits (68), Expect = 1.6 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 12/93 (12%) Frame = +1 Query: 91 EMAETVFSPCLEG--MNH------VRSDSGVMLSKPFLDVCKQILPVL----DKFGAAMA 234 + AET+F L G + H VRS + +PFL + K LPV D+ +++A Sbjct: 122 DQAETIFMRLLRGSRLRHLSGICDVRSFGTGQIIRPFLHIPKDQLPVTFHFEDRSNSSLA 181 Query: 235 IVKSDIGGNITRLENKYSSDPAKYEHLYTMVQE 333 +++ I +T L +P EHL + E Sbjct: 182 YLRNRI--RLTYLPTLSQENPKFKEHLCLLADE 212
>TILS_STRT1 (Q5M217) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 421 Score = 30.8 bits (68), Expect = 1.6 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 12/93 (12%) Frame = +1 Query: 91 EMAETVFSPCLEG--MNH------VRSDSGVMLSKPFLDVCKQILPVL----DKFGAAMA 234 + AET+F L G + H VRS + +PFL + K LPV D+ +++A Sbjct: 122 DQAETIFMRLLRGSRLRHLSGICDVRSFGTGQIIRPFLHIPKDQLPVTFHFEDRSNSSLA 181 Query: 235 IVKSDIGGNITRLENKYSSDPAKYEHLYTMVQE 333 +++ I +T L +P EHL + E Sbjct: 182 YLRNRI--RLTYLPTLSQENPKFKEHLCLLADE 212
>GUTA_BACSU (O34368) Probable glucitol transport protein gutA| Length = 463 Score = 30.4 bits (67), Expect = 2.0 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = -2 Query: 413 RKSMALVSHRSPLVQLDEPFAVF---FSTSSWTMVYKCSYFAGSEEYLFSNLVIF 258 +K+++++ PL+ L F F F+ TMVY +Y +E++F V+F Sbjct: 235 KKTLSVLFKNKPLLMLISSFLAFAIGFNIKLSTMVYYFTYNVNHKEFVFMGTVLF 289
>UBC3_YEAST (P14682) Ubiquitin-conjugating enzyme E2-34 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (Cell division control protein 34) (E3 ubiquitin ligase complex SCF subunit CDC34) Length = 295 Score = 30.4 bits (67), Expect = 2.0 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -2 Query: 290 EEYLFSNLVIFPPISLFTIAIAAPNLSKTGKICLQTSRKGLDSMTPLSDL-TW 135 E++ FS PP FT AI PN+ + G++C+ + D MT D TW Sbjct: 68 EDFPFS-----PPQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETW 115
>TBFG_EPTST (Q90502) Thread biopolymer filament gamma subunit| Length = 603 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/74 (20%), Positives = 42/74 (56%) Frame = +1 Query: 121 LEGMNHVRSDSGVMLSKPFLDVCKQILPVLDKFGAAMAIVKSDIGGNITRLENKYSSDPA 300 ++G++ ++ +L K + K++ P+ ++ + ++ +G +T L+N+ S D Sbjct: 363 IQGISTQTTEQISILDKEINTLEKELQPLNVEYQRLLTTYQT-LGDRLTDLQNRESIDLV 421 Query: 301 KYEHLYTMVQEEVE 342 ++++ YT ++E+E Sbjct: 422 QFQNTYTRYEQEIE 435
>UBC13_SCHPO (O13685) Ubiquitin-conjugating enzyme E2 13 (EC 6.3.2.19)| (Ubiquitin-protein ligase 13) (Ubiquitin carrier protein 13) Length = 148 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 290 EEYLFSNLVIFPPISLFTIAIAAPNLSKTGKICLQTSRK 174 E +L + PP F I PN+ K G+ICL T +K Sbjct: 54 ELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKK 92
>MUKB_VIBVY (Q7MJ64) Chromosome partition protein mukB (Structural maintenance of| chromosome-related protein) Length = 1487 Score = 30.0 bits (66), Expect = 2.7 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Frame = +1 Query: 190 KQILPVLDKFGAAMAIVKSD-IGGNITRLENKYS--SDPAKYEHLYTMVQEEVEKKTA 354 KQ L +LDK MA++ D IG LE K + +D ++ + + E++E + A Sbjct: 871 KQALTMLDKLAPMMAVISDDTIGERFAELEEKIAQLADAKQFLNAHAKAVEQLESQLA 928
>MURE_ECOLI (P22188) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 494 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +3 Query: 108 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLTCLG*IWCCYG 233 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 335 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 384
>MURE_ECOL6 (Q8FL67) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 494 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +3 Query: 108 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLTCLG*IWCCYG 233 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 335 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 384
>MURE_ECO57 (Q8X9Z2) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 494 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +3 Query: 108 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLTCLG*IWCCYG 233 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 335 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 384
>MURE_SHIFL (Q83MG0) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 495 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +3 Query: 108 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLTCLG*IWCCYG 233 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 336 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 385
>MURE_SALTY (Q8ZRU7) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 495 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +3 Query: 108 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLTCLG*IWCCYG 233 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 336 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 385
>MURE_SALTI (Q8Z9H3) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 495 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +3 Query: 108 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLTCLG*IWCCYG 233 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 336 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 385
>K1C17_HUMAN (Q04695) Keratin, type I cytoskeletal 17 (Cytokeratin-17) (CK-17)| (Keratin-17) (K17) (39.1) Length = 431 Score = 29.6 bits (65), Expect = 3.5 Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 2/111 (1%) Frame = +1 Query: 13 AVPSPKFARVARPKAPQFAXIVER*GEMAETVFSPCLEGMNH-VRSDSGVMLS-KPFLDV 186 A P +R+ Q+ + E+ + AE F E +N V ++S ++ S K + Sbjct: 242 AAPGVDLSRILNEMRDQYEKMAEKNRKDAEDWFFSKTEELNREVATNSELVQSGKSEISE 301 Query: 187 CKQILPVLDKFGAAMAIVKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEV 339 ++ + L+ + +K+ + GN+ EN+Y ++ + L V+E++ Sbjct: 302 LRRTMQALEIELQSQLSMKASLEGNLAETENRYCVQLSQIQGLIGSVEEQL 352
>VN1R2_HUMAN (Q8NFZ6) Vomeronasal type-1 receptor 2 (V1r-like receptor 2)| (hGPCR25) Length = 395 Score = 29.3 bits (64), Expect = 4.5 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Frame = -2 Query: 428 GNSSTRKSMALVSHRSPLVQLDEPFAVFFSTSSWTMVYKCSYFAGSEEYLFSNLVI---- 261 GN + + +ALVS FA+ ++ S T VY + F S +L + + Sbjct: 310 GNRAIQSILALVS----------TFALCYALSFITYVY-LALFDNSSWWLVNTAALIIAC 358 Query: 260 FPPISLFTIAIAAPNLSKTGKICLQTSRK 174 FP IS F + P+ S+ IC + +R+ Sbjct: 359 FPTISPFVLMCRDPSRSRLCSICCRRNRR 387
>D105A_PANTR (Q5IAB6) Beta-defensin 105A precursor (Defensin, beta 105A)| (Defensin, beta 105) (Beta-defensin 5) (DEFB-5) (BD-5) (cBD-5) Length = 78 Score = 29.3 bits (64), Expect = 4.5 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -1 Query: 54 FWPCYSCELGRGNCRRE 4 F C SC+LGRG CR+E Sbjct: 40 FAVCESCKLGRGKCRKE 56
>D105A_HUMAN (Q8NG35) Beta-defensin 105A precursor (Beta-defensin 5) (DEFB-5)| (BD-5) Length = 78 Score = 29.3 bits (64), Expect = 4.5 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -1 Query: 54 FWPCYSCELGRGNCRRE 4 F C SC+LGRG CR+E Sbjct: 40 FAVCESCKLGRGKCRKE 56
>MUKB_VIBVU (Q8DAP8) Chromosome partition protein mukB (Structural maintenance of| chromosome-related protein) Length = 1487 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Frame = +1 Query: 190 KQILPVLDKFGAAMAIVKSD-IGGNITRLENKYS--SDPAKYEHLYTMVQEEVEKKTA 354 KQ L +LDK MA++ D IG LE K + +D ++ + E++E + A Sbjct: 871 KQALTMLDKLAPMMAVISDDTIGERFAELEEKIAQLADAKQFLGAHAKAVEQLESQLA 928
>YG2D_YEAST (P53246) Hypothetical 98.1 kDa protein in ROM1-UPF3 intergenic| region Length = 860 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = -2 Query: 287 EYLFSNLVIFPPISLFTIAIAAPNLSKTGKICLQTSRKGLDSMTPLSDLTW--FIPSKHG 114 +YL N + F ++ N S +G+ CL + D P+SD W +I SK+ Sbjct: 735 DYLNDNDISFDGSHFTKHELSEENDSNSGEWCLNPMEETFDIHIPISDSIWNNYISSKNK 794 Query: 113 LNTVSAI 93 + + + Sbjct: 795 IEVIDIL 801
>LKTB_PASSP (P55122) Leukotoxin translocation ATP-binding protein lktB (EC| 3.6.3.43) Length = 708 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -2 Query: 203 GKICLQTSRKGLDSMTPLSDLTWFIPS 123 GKI L TSR + D TWFIP+ Sbjct: 121 GKIILVTSRASIVGQLAKFDFTWFIPA 147 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,344,485 Number of Sequences: 219361 Number of extensions: 1406784 Number of successful extensions: 4876 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4738 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4873 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
