ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd16p23 |
|---|---|
| Clone Library Name | barley_pub |
>GLTP_HUMAN (Q9NZD2) Glycolipid transfer protein (GLTP)| Length = 208 Score = 66.6 bits (161), Expect = 4e-11 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 8/123 (6%) Frame = +1 Query: 205 PFLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKK 381 PFL+ + P D G+ + +K+DI GNIT+++ Y ++PAK+ L +++ E E Sbjct: 21 PFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMY 80 Query: 382 TAKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWH 540 A+ T L+WL R + F+ +++ D HP+ A T +Y LKK+H Sbjct: 81 GAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYH 139 Query: 541 GWL 549 GW+ Sbjct: 140 GWI 142
>GLTP_MOUSE (Q9JL62) Glycolipid transfer protein (GLTP)| Length = 208 Score = 65.5 bits (158), Expect = 1e-10 Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 8/123 (6%) Frame = +1 Query: 205 PFLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKK 381 PFL+ + P D G+ + +K+DI GNIT+++ Y +DPAK++ L +++ E Sbjct: 21 PFLEAVAHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTDPAKFKTLQNILEVEKGMY 80 Query: 382 TAKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWH 540 A+ T LLWL R + F+ +++ D HP+ A +Y LKK+H Sbjct: 81 GAEWPKVGATLALLWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-NKAYEMALKKYH 139 Query: 541 GWL 549 GWL Sbjct: 140 GWL 142
>GLTP_PIG (P68266) Glycolipid transfer protein (GLTP)| Length = 208 Score = 65.1 bits (157), Expect = 1e-10 Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 8/123 (6%) Frame = +1 Query: 205 PFLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKK 381 PFL+ + P D G+ + +K+DI GNIT+++ Y ++P K+ L +++ E E Sbjct: 21 PFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMY 80 Query: 382 TAKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWH 540 A+ T L+WL R + F+ +++ D HP+ A T +Y LKK+H Sbjct: 81 GAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYH 139 Query: 541 GWL 549 GW+ Sbjct: 140 GWI 142
>GLTP_BOVIN (P68265) Glycolipid transfer protein (GLTP)| Length = 208 Score = 65.1 bits (157), Expect = 1e-10 Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 8/123 (6%) Frame = +1 Query: 205 PFLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKK 381 PFL+ + P D G+ + +K+DI GNIT+++ Y ++P K+ L +++ E E Sbjct: 21 PFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMY 80 Query: 382 TAKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWH 540 A+ T L+WL R + F+ +++ D HP+ A T +Y LKK+H Sbjct: 81 GAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYH 139 Query: 541 GWL 549 GW+ Sbjct: 140 GWI 142
>TBFG_EPTST (Q90502) Thread biopolymer filament gamma subunit| Length = 603 Score = 33.5 bits (75), Expect = 0.42 Identities = 23/123 (18%), Positives = 59/123 (47%), Gaps = 2/123 (1%) Frame = +1 Query: 154 LEGMNHVRSDSGVMLSKPFLDVCKQILPVLDKFGAAMAIVKSDIGGNITRLENKYSSDPA 333 ++G++ ++ +L K + K++ P+ ++ + ++ +G +T L+N+ S D Sbjct: 363 IQGISTQTTEQISILDKEINTLEKELQPLNVEYQRLLTTYQT-LGDRLTDLQNRESIDLV 421 Query: 334 KYEHLYTMVQEEVEKKTAKGSSSCT--NGLLWLTRAMDFLVELFRNLLDHPDWTMSQACT 507 ++++ YT ++E+E LL + A+D + ++ LL+ + + A Sbjct: 422 QFQNTYTRYEQEIEGNQVDLQRQLVTYQQLLDVKTALDAEIATYKKLLEGQELMVRTAMA 481 Query: 508 DSY 516 D + Sbjct: 482 DDF 484
>CP19A_ORYLA (Q92087) Cytochrome P450 19A1 (EC 1.14.14.1) (Aromatase) (CYPXIX)| (Estrogen synthetase) (P-450AROM) Length = 518 Score = 31.2 bits (69), Expect = 2.1 Identities = 14/44 (31%), Positives = 30/44 (68%), Gaps = 1/44 (2%) Frame = -1 Query: 308 SNLVIFPPI-SLFTIAIAAPNLSKTGKICLQTSRKGLDSMTPLS 180 +N+ ++ I + FT A+ PNL +T ++C+ +++ LD+++ LS Sbjct: 150 NNVALWKKIRTYFTKALTGPNLQQTVEVCVTSTQTHLDNLSSLS 193
>GUTA_BACSU (O34368) Probable glucitol transport protein gutA| Length = 463 Score = 30.8 bits (68), Expect = 2.7 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Frame = -1 Query: 461 RNSSTRKSMALVSHRSPLVQLDEPFAVF---FSTSSWTMVYKCSYFAGSEEYLFSNLVIF 291 + +K+++++ PL+ L F F F+ TMVY +Y +E++F V+F Sbjct: 230 KKQGIKKTLSVLFKNKPLLMLISSFLAFAIGFNIKLSTMVYYFTYNVNHKEFVFMGTVLF 289
>TILS_STRT2 (Q5M6K9) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 421 Score = 30.8 bits (68), Expect = 2.7 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 12/93 (12%) Frame = +1 Query: 124 EMAETVFSPCLEG--MNH------VRSDSGVMLSKPFLDVCKQILPVL----DKFGAAMA 267 + AET+F L G + H VRS + +PFL + K LPV D+ +++A Sbjct: 122 DQAETIFMRLLRGSRLRHLSGICDVRSFGTGQIIRPFLHIPKDQLPVTFHFEDRSNSSLA 181 Query: 268 IVKSDIGGNITRLENKYSSDPAKYEHLYTMVQE 366 +++ I +T L +P EHL + E Sbjct: 182 YLRNRI--RLTYLPTLSQENPKFKEHLCLLADE 212
>TILS_STRT1 (Q5M217) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 421 Score = 30.8 bits (68), Expect = 2.7 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 12/93 (12%) Frame = +1 Query: 124 EMAETVFSPCLEG--MNH------VRSDSGVMLSKPFLDVCKQILPVL----DKFGAAMA 267 + AET+F L G + H VRS + +PFL + K LPV D+ +++A Sbjct: 122 DQAETIFMRLLRGSRLRHLSGICDVRSFGTGQIIRPFLHIPKDQLPVTFHFEDRSNSSLA 181 Query: 268 IVKSDIGGNITRLENKYSSDPAKYEHLYTMVQE 366 +++ I +T L +P EHL + E Sbjct: 182 YLRNRI--RLTYLPTLSQENPKFKEHLCLLADE 212
>PRSA_STAES (Q8CNR4) Foldase protein prsA precursor (EC 5.2.1.8)| Length = 325 Score = 30.8 bits (68), Expect = 2.7 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Frame = +1 Query: 22 SADRQGLSPAVPSPKFAREKAKSTAVCEIVER*GEMAETVFSPCLEGMNHVRSDS-GVML 198 S+D++GLS K A+EKA+ E+ + + E ++ + + S G ++ Sbjct: 155 SSDKEGLSD-----KKAKEKAEKIQK-EVEKNPNKFGEIAKKESMDSSSAKKDGSLGYVI 208 Query: 199 SKPFLDVCKQILPVLDKFGAAMAIVKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEK 378 +D ++ L L K G +VK+D G +I + + + + K +++E+V+K Sbjct: 209 KGQMVDSFEKALFKL-KEGEVSKVVKTDYGYHIIKADKETDFNSEKSNIKQKLIEEKVQK 267 Query: 379 K 381 K Sbjct: 268 K 268
>PRSA_STAEQ (Q5HN96) Foldase protein prsA precursor (EC 5.2.1.8)| Length = 325 Score = 30.8 bits (68), Expect = 2.7 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Frame = +1 Query: 22 SADRQGLSPAVPSPKFAREKAKSTAVCEIVER*GEMAETVFSPCLEGMNHVRSDS-GVML 198 S+D++GLS K A+EKA+ E+ + + E ++ + + S G ++ Sbjct: 155 SSDKEGLSD-----KKAKEKAEKIQK-EVEKNPNKFGEIAKKESMDSSSAKKDGSLGYVI 208 Query: 199 SKPFLDVCKQILPVLDKFGAAMAIVKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEK 378 +D ++ L L K G +VK+D G +I + + + + K +++E+V+K Sbjct: 209 KGQMVDSFEKALFKL-KEGEVSKVVKTDYGYHIIKADKETDFNSEKSNIKQKLIEEKVQK 267 Query: 379 K 381 K Sbjct: 268 K 268
>YG2D_YEAST (P53246) Hypothetical 98.1 kDa protein in ROM1-UPF3 intergenic region| Length = 860 Score = 30.4 bits (67), Expect = 3.5 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 2/95 (2%) Frame = -1 Query: 320 EYLFSNLVIFPPISLFTIAIAAPNLSKTGKICLQTSRKGLDSMTPLSDLTW--FIPSKHG 147 +YL N + F ++ N S +G+ CL + D P+SD W +I SK+ Sbjct: 735 DYLNDNDISFDGSHFTKHELSEENDSNSGEWCLNPMEETFDIHIPISDSIWNNYISSKNK 794 Query: 146 LNTVSAISPYRSTISQTAVLLAFSRANLGEGTAGE 42 + + + S S +++ R+ L TA + Sbjct: 795 IEVIDILLQLLSVNSTSSI-----RSELSSLTANQ 824
>UBC3_YEAST (P14682) Ubiquitin-conjugating enzyme E2-34 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (Cell division control protein 34) (E3 ubiquitin ligase complex SCF subunit CDC34) Length = 295 Score = 30.4 bits (67), Expect = 3.5 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -1 Query: 323 EEYLFSNLVIFPPISLFTIAIAAPNLSKTGKICLQTSRKGLDSMTPLSDL-TW 168 E++ FS PP FT AI PN+ + G++C+ + D MT D TW Sbjct: 68 EDFPFS-----PPQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETW 115
>MURE_SHIFL (Q83MG0) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 495 Score = 30.0 bits (66), Expect = 4.6 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +3 Query: 141 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLTCLG*IWCCYG 266 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 336 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 385
>MURE_SALTY (Q8ZRU7) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 495 Score = 30.0 bits (66), Expect = 4.6 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +3 Query: 141 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLTCLG*IWCCYG 266 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 336 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 385
>MURE_SALTI (Q8Z9H3) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 495 Score = 30.0 bits (66), Expect = 4.6 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +3 Query: 141 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLTCLG*IWCCYG 266 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 336 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 385
>MURE_ECOLI (P22188) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 494 Score = 30.0 bits (66), Expect = 4.6 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +3 Query: 141 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLTCLG*IWCCYG 266 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 335 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 384
>MURE_ECOL6 (Q8FL67) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 494 Score = 30.0 bits (66), Expect = 4.6 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +3 Query: 141 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLTCLG*IWCCYG 266 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 335 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 384
>MURE_ECO57 (Q8X9Z2) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 494 Score = 30.0 bits (66), Expect = 4.6 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +3 Query: 141 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLTCLG*IWCCYG 266 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 335 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 384
>MUKB_VIBVY (Q7MJ64) Chromosome partition protein mukB (Structural maintenance of| chromosome-related protein) Length = 1487 Score = 30.0 bits (66), Expect = 4.6 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Frame = +1 Query: 223 KQILPVLDKFGAAMAIVKSD-IGGNITRLENKYS--SDPAKYEHLYTMVQEEVEKKTA 387 KQ L +LDK MA++ D IG LE K + +D ++ + + E++E + A Sbjct: 871 KQALTMLDKLAPMMAVISDDTIGERFAELEEKIAQLADAKQFLNAHAKAVEQLESQLA 928
>UBC13_SCHPO (O13685) Ubiquitin-conjugating enzyme E2 13 (EC 6.3.2.19)| (Ubiquitin-protein ligase 13) (Ubiquitin carrier protein 13) Length = 148 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -1 Query: 323 EEYLFSNLVIFPPISLFTIAIAAPNLSKTGKICLQTSRK 207 E +L + PP F I PN+ K G+ICL T +K Sbjct: 54 ELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKK 92
>LKTB_PASSP (P55122) Leukotoxin translocation ATP-binding protein lktB (EC| 3.6.3.43) Length = 708 Score = 29.6 bits (65), Expect = 6.0 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = -1 Query: 236 GKICLQTSRKGLDSMTPLSDLTWFIPSKHGLNTVSAISPYRSTISQTAVLLAF 78 GKI L TSR + D TWFIP A+ YR +T ++ F Sbjct: 121 GKIILVTSRASIVGQLAKFDFTWFIP---------AVIKYRKIFLETLLVSIF 164
>YB33_SCHPO (O14338) Serine-rich protein C2F12.03c in chromosome II| Length = 891 Score = 29.3 bits (64), Expect = 7.9 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 540 MPFLQSFCV*ISTCLTHSPVWMVKQI 463 MP L CV S+CL + VW+ K I Sbjct: 574 MPMLLPLCVLTSSCLQNGDVWLTKDI 599
>D105A_PANTR (Q5IAB6) Beta-defensin 105A precursor (Defensin, beta 105A)| (Defensin, beta 105) (Beta-defensin 5) (DEFB-5) (BD-5) (cBD-5) Length = 78 Score = 29.3 bits (64), Expect = 7.9 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -3 Query: 123 PLPLHDLANCGAFGLLSCELGRGNCRREAL 34 P P + A C SC+LGRG CR+E L Sbjct: 34 PFPSGEFAVCE-----SCKLGRGKCRKECL 58
>D105A_HUMAN (Q8NG35) Beta-defensin 105A precursor (Beta-defensin 5) (DEFB-5)| (BD-5) Length = 78 Score = 29.3 bits (64), Expect = 7.9 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -3 Query: 123 PLPLHDLANCGAFGLLSCELGRGNCRREAL 34 P P + A C SC+LGRG CR+E L Sbjct: 34 PFPSGEFAVCE-----SCKLGRGKCRKECL 58 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,024,646 Number of Sequences: 219361 Number of extensions: 1936407 Number of successful extensions: 6629 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 6340 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6623 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
