ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd17e20 |
|---|---|
| Clone Library Name | barley_pub |
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 117 bits (292), Expect = 2e-26 Identities = 53/132 (40%), Positives = 84/132 (63%) Frame = +1 Query: 94 MEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVA 273 + +S K+F+GG++W+T ED LR+YFG++G VT+ IM+D TGR+RGFGF+ F + Sbjct: 154 LSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSV 213 Query: 274 ERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEV 453 + V +H++DG++++ K+A+PRD+Q +T KIFVGG+ +V Sbjct: 214 DEVVKTQHILDGKVIDPKRAIPRDEQD----------------KTGKIFVGGIGPDVRPK 257 Query: 454 EFXRYFEQFGMI 489 EF +F Q+G I Sbjct: 258 EFEEFFSQWGTI 269 Score = 72.0 bits (175), Expect = 8e-13 Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 1/96 (1%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT 285 +GK+FVGGI + ++F ++G + +A +M D++TG++RGFGF+ + A +RV Sbjct: 242 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVC 301 Query: 286 MDKHM-IDGRMVEAKKAVPRDDQSIASKNNGSSIGS 390 +K + R +E K+A PR Q +S N G++ G+ Sbjct: 302 QNKFIDFKDRKIEIKRAEPRHMQQKSSNNGGNNGGN 337
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 115 bits (288), Expect = 6e-26 Identities = 59/143 (41%), Positives = 85/143 (59%), Gaps = 2/143 (1%) Frame = +1 Query: 67 RGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGF 246 +G G + + D GK+F+GG+SW+T D LRDYF +FGE+ E ++MRD T R+RGFGF Sbjct: 7 QGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGF 66 Query: 247 IVFAEAGVAERVT-MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPV-RTRKIF 420 + FA+ ++V H +D + ++ K A PR Q P V RT+KIF Sbjct: 67 VTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQ-------------PKMVTRTKKIF 113 Query: 421 VGGLASNVTEVEFXRYFEQFGMI 489 VGGL++N + +YFEQFG + Sbjct: 114 VGGLSANTVVEDVKQYFEQFGKV 136 Score = 72.8 bits (177), Expect = 5e-13 Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Frame = +1 Query: 76 RGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF 255 R + M + K+FVGG+S T + ++ YF +FG+V +A++M D+ T R RGFGF+ F Sbjct: 99 RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158 Query: 256 AEAGVAERV-TMDKHMIDGRMVEAKKAVPRD 345 V E+V + H I+ +MVE KKA P++ Sbjct: 159 ENEDVVEKVCEIHFHEINNKMVECKKAQPKE 189
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 115 bits (287), Expect = 8e-26 Identities = 59/142 (41%), Positives = 84/142 (59%), Gaps = 2/142 (1%) Frame = +1 Query: 70 GRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFI 249 G G + + D GK+F+GG+SW+T D LRDYF +FGE+ E ++MRD T R+RGFGF+ Sbjct: 8 GTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFV 67 Query: 250 VFAEAGVAERVT-MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPV-RTRKIFV 423 FA+ ++V H +D + ++ K A PR Q P V RT+KIFV Sbjct: 68 TFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQ-------------PKMVTRTKKIFV 114 Query: 424 GGLASNVTEVEFXRYFEQFGMI 489 GGL++N + +YFEQFG + Sbjct: 115 GGLSANTVVEDVKQYFEQFGKV 136 Score = 72.8 bits (177), Expect = 5e-13 Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Frame = +1 Query: 76 RGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF 255 R + M + K+FVGG+S T + ++ YF +FG+V +A++M D+ T R RGFGF+ F Sbjct: 99 RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158 Query: 256 AEAGVAERV-TMDKHMIDGRMVEAKKAVPRD 345 V E+V + H I+ +MVE KKA P++ Sbjct: 159 ENEDVVEKVCEIHFHEINNKMVECKKAQPKE 189
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 114 bits (284), Expect = 2e-25 Identities = 63/154 (40%), Positives = 86/154 (55%), Gaps = 8/154 (5%) Frame = +1 Query: 52 TTTADRGRRGGEDA-------MEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMR 210 TTTA G + G + E D+GK+FVGG+SW+T + L+DYF +FGEV + I Sbjct: 49 TTTAPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM 108 Query: 211 DRNTGRARGFGFIVFAEAGVAERVTMDK-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIG 387 D NTGR+RGFGFI+F ++ E+V K H +DGR+++ KKA+ + Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPV---------- 158 Query: 388 SPGPVRTRKIFVGGLASNVTEVEFXRYFEQFGMI 489 +KIFVGGL TE + YF QFG I Sbjct: 159 -------KKIFVGGLNPEATEEKIREYFGQFGEI 185 Score = 60.5 bits (145), Expect = 2e-09 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGG++ E E+++R+YFG+FGE+ + D + RGF FI F E ++V Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219 Query: 292 K-HMIDGRMVEAKKAVPRD 345 K H + G E K A P++ Sbjct: 220 KFHTVSGSKCEIKVAQPKE 238
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 110 bits (275), Expect = 2e-24 Identities = 58/131 (44%), Positives = 83/131 (63%), Gaps = 2/131 (1%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA-EAGVAER 279 D K+F+GG+SW+T ++ LR+YFG+FGEV E ++MRD T R+RGFGF+ F +AGV + Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77 Query: 280 VTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPV-RTRKIFVGGLASNVTEVE 456 + +H +D + ++ K A PR Q P V RT+KIFVGGL+ N T + Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQ-------------PKMVTRTKKIFVGGLSVNTTVED 124 Query: 457 FXRYFEQFGMI 489 +YFEQFG + Sbjct: 125 VKQYFEQFGKV 135 Score = 75.1 bits (183), Expect = 1e-13 Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 1/103 (0%) Frame = +1 Query: 76 RGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF 255 R + M + K+FVGG+S T + ++ YF +FG+V +A++M D+ T R RGFGF+ F Sbjct: 98 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157 Query: 256 AEAGVAERV-TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSS 381 + E+V + H I+ +MVE KKA P++ S G S Sbjct: 158 ESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRS 200
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 110 bits (274), Expect = 3e-24 Identities = 58/131 (44%), Positives = 82/131 (62%), Gaps = 2/131 (1%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA-EAGVAER 279 D K+F+GG+SW+T ++ LR+YFG+FGEV E ++MRD T R+RGFGF+ F +AGV + Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77 Query: 280 VTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPV-RTRKIFVGGLASNVTEVE 456 + +H +D + ++ K A PR Q P V RT+KIFVGGL+ N T + Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQ-------------PKMVTRTKKIFVGGLSVNTTVED 124 Query: 457 FXRYFEQFGMI 489 YFEQFG + Sbjct: 125 VKHYFEQFGKV 135 Score = 74.7 bits (182), Expect = 1e-13 Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 1/103 (0%) Frame = +1 Query: 76 RGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF 255 R + M + K+FVGG+S T + ++ YF +FG+V +A++M D+ T R RGFGF+ F Sbjct: 98 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157 Query: 256 AEAGVAERV-TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSS 381 + E+V + H I+ +MVE KKA P++ S G S Sbjct: 158 ESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRS 200
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 110 bits (274), Expect = 3e-24 Identities = 58/131 (44%), Positives = 82/131 (62%), Gaps = 2/131 (1%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA-EAGVAER 279 D K+F+GG+SW+T ++ LR+YFG+FGEV E ++MRD T R+RGFGF+ F +AGV + Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77 Query: 280 VTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPV-RTRKIFVGGLASNVTEVE 456 + +H +D + ++ K A PR Q P V RT+KIFVGGL+ N T + Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQ-------------PKMVTRTKKIFVGGLSVNTTVED 124 Query: 457 FXRYFEQFGMI 489 YFEQFG + Sbjct: 125 VKHYFEQFGKV 135 Score = 74.7 bits (182), Expect = 1e-13 Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 1/103 (0%) Frame = +1 Query: 76 RGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF 255 R + M + K+FVGG+S T + ++ YF +FG+V +A++M D+ T R RGFGF+ F Sbjct: 98 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157 Query: 256 AEAGVAERV-TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSS 381 + E+V + H I+ +MVE KKA P++ S G S Sbjct: 158 ESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRS 200
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 105 bits (262), Expect = 7e-23 Identities = 57/133 (42%), Positives = 79/133 (59%), Gaps = 2/133 (1%) Frame = +1 Query: 97 EADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 E D+GK+FVGG+SW+T + L+DYF +FGEV + I D NTGR+RGFGFI+F +A E Sbjct: 64 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 123 Query: 277 RVTMDK-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGL-ASNVTE 450 +V K H +DGR+++ KKA+ + +KIFVGGL + TE Sbjct: 124 KVLDQKEHRLDGRVIDPKKAMAMKKDPV-----------------KKIFVGGLNPESPTE 166 Query: 451 VEFXRYFEQFGMI 489 + YF +FG I Sbjct: 167 EKIREYFGEFGEI 179 Score = 56.2 bits (134), Expect = 5e-08 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%) Frame = +1 Query: 112 KLFVGGISWETD-EDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTM 288 K+FVGG++ E+ E+++R+YFG FGE+ + D + RGF FI F E ++V Sbjct: 153 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 212 Query: 289 DK-HMIDGRMVEAKKAVPRD 345 K H + G E K A P++ Sbjct: 213 KKFHTVSGSKCEIKVAQPKE 232
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 104 bits (259), Expect = 1e-22 Identities = 54/132 (40%), Positives = 76/132 (57%), Gaps = 4/132 (3%) Frame = +1 Query: 109 GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTM 288 GKLFVGG+ W T ++ LR YF ++GEV + VIM+D+ T ++RGFGF+ F + V Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69 Query: 289 DK-HMIDGRMVEAKKAVPRDDQSIASK-NNGSSIGSPGP--VRTRKIFVGGLASNVTEVE 456 + H +DGR ++ K PR Q S+ G P R+ KIFVGG+ N E E Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETE 129 Query: 457 FXRYFEQFGMIT 492 YF +FG++T Sbjct: 130 LKEYFNRFGVVT 141 Score = 77.4 bits (189), Expect = 2e-14 Identities = 44/93 (47%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA-EAGVAERV 282 S K+FVGGI E L++YF RFG VTE V++ D R RGFGFI F E V + V Sbjct: 113 SNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 172 Query: 283 TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSS 381 M H I G+ VE K+A PRD +S GS+ Sbjct: 173 NMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSN 205
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 103 bits (258), Expect = 2e-22 Identities = 53/133 (39%), Positives = 78/133 (58%), Gaps = 1/133 (0%) Frame = +1 Query: 97 EADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 E + GKLFVGG+SWET ++ L YF RFG++ + V+M++ +GR+RGFGF+ FA+ Sbjct: 3 EDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVN 62 Query: 277 RVTMD-KHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEV 453 V + H +DGR ++ K PR Q K G K+F+GGL SNVTE Sbjct: 63 HVLQNGPHTLDGRTIDPKPCNPRTLQK-PKKGGG-----------YKVFLGGLPSNVTET 110 Query: 454 EFXRYFEQFGMIT 492 + +F ++G +T Sbjct: 111 DLRTFFNRYGKVT 123 Score = 78.6 bits (192), Expect = 9e-15 Identities = 40/96 (41%), Positives = 60/96 (62%), Gaps = 1/96 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+F+GG+ E LR +F R+G+VTE VIM D+ ++RGFGF+ F E E VT + Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156 Query: 292 KHM-IDGRMVEAKKAVPRDDQSIASKNNGSSIGSPG 396 +++ ++G+ VE KKA PRD + NN + G+ G Sbjct: 157 RYINLNGKQVEIKKAEPRDGSGGQNSNNSTVGGAYG 192
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 103 bits (257), Expect = 2e-22 Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 3/131 (2%) Frame = +1 Query: 109 GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTM 288 GKLFVGG+ W T ++ LR YF ++GEV + VIM+D+ T ++RGFGF+ F + V Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69 Query: 289 DK-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSP--GPVRTRKIFVGGLASNVTEVEF 459 + H +DGR ++ K PR Q ++ P ++ KIFVGG+ N E E Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETEL 129 Query: 460 XRYFEQFGMIT 492 YF++FG++T Sbjct: 130 REYFKKFGVVT 140 Score = 79.7 bits (195), Expect = 4e-15 Identities = 47/110 (42%), Positives = 61/110 (55%), Gaps = 1/110 (0%) Frame = +1 Query: 55 TTADRGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRAR 234 T G + G + + S K+FVGGI E LR+YF +FG VTE V++ D R R Sbjct: 95 TRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPR 154 Query: 235 GFGFIVFA-EAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSS 381 GFGFI F E V + V M H I G+ VE K+A PRD ++ A G+S Sbjct: 155 GFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGAS 204
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 103 bits (256), Expect = 3e-22 Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 3/131 (2%) Frame = +1 Query: 109 GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTM 288 GKLFVGG+ W T ++ LR YF ++GEV + VIM+D+ T ++RGFGF+ F + V Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69 Query: 289 DK-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSP--GPVRTRKIFVGGLASNVTEVEF 459 + H +DGR ++ K PR Q ++ P ++ KIFVGG+ N E E Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129 Query: 460 XRYFEQFGMIT 492 YF++FG++T Sbjct: 130 REYFKKFGVVT 140 Score = 80.9 bits (198), Expect = 2e-15 Identities = 48/110 (43%), Positives = 61/110 (55%), Gaps = 1/110 (0%) Frame = +1 Query: 55 TTADRGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRAR 234 T G + G + + S K+FVGGI E LR+YF +FG VTE V++ D R R Sbjct: 95 TRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPR 154 Query: 235 GFGFIVFA-EAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSS 381 GFGFI F E V + V M H I G+ VE K+A PRD +S A G+S Sbjct: 155 GFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGAS 204
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 100 bits (250), Expect = 2e-21 Identities = 53/128 (41%), Positives = 79/128 (61%), Gaps = 2/128 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAG-VAERVTM 288 KLF+GG+S+ET ++ LR++F ++G +T+ V+MRD N+ R+RGFGF+ + V +T Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGP-VRTRKIFVGGLASNVTEVEFXR 465 H +DGR+VE K+AV R+D S PG + +KIFVGG+ + E Sbjct: 75 RPHKVDGRVVEPKRAVSREDSS-----------RPGAHLTVKKIFVGGIKEDTEEDHLRE 123 Query: 466 YFEQFGMI 489 YFEQ+G I Sbjct: 124 YFEQYGKI 131 Score = 68.2 bits (165), Expect = 1e-11 Identities = 31/94 (32%), Positives = 56/94 (59%), Gaps = 1/94 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGGI +T+ED LR+YF ++G++ IM DR +G+ RGF F+ F + +++ + Sbjct: 106 KIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQ 165 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGS 390 K H ++ + +KA+ + + + S + GS Sbjct: 166 KYHTVNNHNSQVRKALSKQEMASVSGSQRERGGS 199 Score = 33.9 bits (76), Expect = 0.24 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +1 Query: 397 PVRTRKIFVGGLASNVTEVEFXRYFEQFGMIT 492 P + RK+F+GGL+ T+ +FEQ+G +T Sbjct: 10 PEQLRKLFIGGLSFETTDESLREHFEQWGTLT 41
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 100 bits (249), Expect = 2e-21 Identities = 49/139 (35%), Positives = 88/139 (63%), Gaps = 2/139 (1%) Frame = +1 Query: 82 GEDAMEADS-GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA 258 G+ ++E ++ K+FVGG++ T +D +R+++ +FGE+T+ ++MRD T R+RGFGF+ F+ Sbjct: 13 GDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFS 72 Query: 259 -EAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLA 435 + V + H+IDG+ V+ K+AVPRDD++ + N V T++++V G+ Sbjct: 73 GKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESN----------VSTKRLYVSGVR 122 Query: 436 SNVTEVEFXRYFEQFGMIT 492 + TE YF ++G +T Sbjct: 123 EDHTEDMLTEYFTKYGTVT 141 Score = 64.3 bits (155), Expect = 2e-10 Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 1/87 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 +L+V G+ + ED L +YF ++G VT++ I+ D+ T + RGFGF+ F + ++ + Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ 174 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKN 369 K HM++G + +K + +D+ S A N Sbjct: 175 KSHMVNGHRCDVRKGLSKDEMSKAQMN 201 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/41 (51%), Positives = 24/41 (58%) Frame = +1 Query: 370 NGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRYFEQFGMIT 492 NGS S P RKIFVGGL SN T+ ++ QFG IT Sbjct: 10 NGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEIT 50
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 99.8 bits (247), Expect = 4e-21 Identities = 53/128 (41%), Positives = 80/128 (62%), Gaps = 2/128 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAE-AGVAERVTM 288 KLF+GG+S+ET E+ LR+Y+ ++G++T+ V+MRD + R+RGFGF+ F+ A V + Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGP-VRTRKIFVGGLASNVTEVEFXR 465 H IDGR+VE K+AV R++ G PG V +K+FVGG+ + E Sbjct: 70 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 118 Query: 466 YFEQFGMI 489 YFE++G I Sbjct: 119 YFEEYGKI 126 Score = 74.7 bits (182), Expect = 1e-13 Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 2/90 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 KLFVGGI +T+E LRDYF +G++ I+ DR +G+ RGFGF+ F + +++ + Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160 Query: 292 K-HMIDGRMVEAKKAVPRDD-QSIASKNNG 375 K H I+G E +KA+ R + Q + S +G Sbjct: 161 KYHTINGHNAEVRKALSRQEMQEVQSSRSG 190 Score = 33.9 bits (76), Expect = 0.24 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +1 Query: 409 RKIFVGGLASNVTEVEFXRYFEQFGMIT 492 RK+F+GGL+ TE Y+EQ+G +T Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLT 36
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 99.8 bits (247), Expect = 4e-21 Identities = 53/128 (41%), Positives = 80/128 (62%), Gaps = 2/128 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAE-AGVAERVTM 288 KLF+GG+S+ET E+ LR+Y+ ++G++T+ V+MRD + R+RGFGF+ F+ A V + Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGP-VRTRKIFVGGLASNVTEVEFXR 465 H IDGR+VE K+AV R++ G PG V +K+FVGG+ + E Sbjct: 82 RPHSIDGRVVEPKRAVAREES-----------GKPGAHVTVKKLFVGGIKEDTEEHHLRD 130 Query: 466 YFEQFGMI 489 YFE++G I Sbjct: 131 YFEEYGKI 138 Score = 74.7 bits (182), Expect = 1e-13 Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 2/90 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 KLFVGGI +T+E LRDYF +G++ I+ DR +G+ RGFGF+ F + +++ + Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172 Query: 292 K-HMIDGRMVEAKKAVPRDD-QSIASKNNG 375 K H I+G E +KA+ R + Q + S +G Sbjct: 173 KYHTINGHNAEVRKALSRQEMQEVQSSRSG 202 Score = 33.9 bits (76), Expect = 0.24 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +1 Query: 409 RKIFVGGLASNVTEVEFXRYFEQFGMIT 492 RK+F+GGL+ TE Y+EQ+G +T Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLT 48
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 99.8 bits (247), Expect = 4e-21 Identities = 57/145 (39%), Positives = 85/145 (58%), Gaps = 4/145 (2%) Frame = +1 Query: 67 RGRRG--GEDAMEADS-GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARG 237 R RRG G D E + KLF+GG+S+ET +D LR++F ++G +T+ V+MRD T R+RG Sbjct: 18 RRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRG 77 Query: 238 FGFIVFA-EAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRK 414 FGF+ ++ V + H +DGR+VE K+AV R+D S+ + +K Sbjct: 78 FGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED----------SVKPGAHLTVKK 127 Query: 415 IFVGGLASNVTEVEFXRYFEQFGMI 489 IFVGG+ + E YFE++G I Sbjct: 128 IFVGGIKEDTEEYNLRDYFEKYGKI 152 Score = 75.9 bits (185), Expect = 6e-14 Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 1/94 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGGI +T+E LRDYF ++G++ +M DR +G+ RGF F+ F + +++ + Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGS 390 K H I+G E KKA+ + + A G GS Sbjct: 187 KYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGS 220 Score = 33.1 bits (74), Expect = 0.41 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +1 Query: 337 PRDDQSIASKNNGSSIGSPG-PVRTRKIFVGGLASNVTEVEFXRYFEQFGMIT 492 P+ D + G P P + RK+F+GGL+ T+ +FE++G +T Sbjct: 10 PQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLT 62
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 99.8 bits (247), Expect = 4e-21 Identities = 57/145 (39%), Positives = 85/145 (58%), Gaps = 4/145 (2%) Frame = +1 Query: 67 RGRRG--GEDAMEADS-GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARG 237 R RRG G D E + KLF+GG+S+ET +D LR++F ++G +T+ V+MRD T R+RG Sbjct: 18 RRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRG 77 Query: 238 FGFIVFA-EAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRK 414 FGF+ ++ V + H +DGR+VE K+AV R+D S+ + +K Sbjct: 78 FGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED----------SVKPGAHLTVKK 127 Query: 415 IFVGGLASNVTEVEFXRYFEQFGMI 489 IFVGG+ + E YFE++G I Sbjct: 128 IFVGGIKEDTEEYNLRDYFEKYGKI 152 Score = 75.9 bits (185), Expect = 6e-14 Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 1/94 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGGI +T+E LRDYF ++G++ +M DR +G+ RGF F+ F + +++ + Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGS 390 K H I+G E KKA+ + + A G GS Sbjct: 187 KYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGS 220 Score = 33.1 bits (74), Expect = 0.41 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +1 Query: 337 PRDDQSIASKNNGSSIGSPG-PVRTRKIFVGGLASNVTEVEFXRYFEQFGMIT 492 P+ D + G P P + RK+F+GGL+ T+ +FE++G +T Sbjct: 10 PQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLT 62
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 99.8 bits (247), Expect = 4e-21 Identities = 57/145 (39%), Positives = 85/145 (58%), Gaps = 4/145 (2%) Frame = +1 Query: 67 RGRRG--GEDAMEADS-GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARG 237 R RRG G D E + KLF+GG+S+ET +D LR++F ++G +T+ V+MRD T R+RG Sbjct: 18 RRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRG 77 Query: 238 FGFIVFA-EAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRK 414 FGF+ ++ V + H +DGR+VE K+AV R+D S+ + +K Sbjct: 78 FGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED----------SVKPGAHLTVKK 127 Query: 415 IFVGGLASNVTEVEFXRYFEQFGMI 489 IFVGG+ + E YFE++G I Sbjct: 128 IFVGGIKEDTEEYNLRDYFEKYGKI 152 Score = 75.9 bits (185), Expect = 6e-14 Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 1/94 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGGI +T+E LRDYF ++G++ +M DR +G+ RGF F+ F + +++ + Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGS 390 K H I+G E KKA+ + + A G GS Sbjct: 187 KYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGS 220 Score = 33.1 bits (74), Expect = 0.41 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +1 Query: 337 PRDDQSIASKNNGSSIGSPG-PVRTRKIFVGGLASNVTEVEFXRYFEQFGMIT 492 P+ D + G P P + RK+F+GGL+ T+ +FE++G +T Sbjct: 10 PQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLT 62
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 99.0 bits (245), Expect = 6e-21 Identities = 53/127 (41%), Positives = 79/127 (62%), Gaps = 1/127 (0%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEA-GVAERVTM 288 KLF+GG+S+ET ++ LR +F ++G +T+ V+MRD NT R+RGFGF+ +A V + Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 H +DGR+VE K+AV R+D S+ G+ + +KIFVGG+ + E Y Sbjct: 74 RPHKVDGRVVEPKRAVSRED----SQRPGAHL------TVKKIFVGGIKEDTEEHHLRDY 123 Query: 469 FEQFGMI 489 FEQ+G I Sbjct: 124 FEQYGKI 130 Score = 72.8 bits (177), Expect = 5e-13 Identities = 34/94 (36%), Positives = 57/94 (60%), Gaps = 1/94 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGGI +T+E LRDYF ++G++ IM DR +G+ RGF F+ F + +++ + Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGS 390 K H ++G E +KA+ + + + AS + GS Sbjct: 165 KYHTVNGHNCEVRKALCKQEMASASSSQRGRSGS 198 Score = 33.5 bits (75), Expect = 0.32 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +1 Query: 397 PVRTRKIFVGGLASNVTEVEFXRYFEQFGMIT 492 P + RK+F+GGL+ T+ +FEQ+G +T Sbjct: 9 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLT 40
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 99.0 bits (245), Expect = 6e-21 Identities = 53/127 (41%), Positives = 79/127 (62%), Gaps = 1/127 (0%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEA-GVAERVTM 288 KLF+GG+S+ET ++ LR +F ++G +T+ V+MRD NT R+RGFGF+ +A V + Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 H +DGR+VE K+AV R+D S+ G+ + +KIFVGG+ + E Y Sbjct: 74 RPHKVDGRVVEPKRAVSRED----SQRPGAHL------TVKKIFVGGIKEDTEEHHLRDY 123 Query: 469 FEQFGMI 489 FEQ+G I Sbjct: 124 FEQYGKI 130 Score = 73.6 bits (179), Expect = 3e-13 Identities = 34/94 (36%), Positives = 57/94 (60%), Gaps = 1/94 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGGI +T+E LRDYF ++G++ IM DR +G+ RGF F+ F + +++ + Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGS 390 K H ++G E +KA+ + + + AS + GS Sbjct: 165 KYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS 198 Score = 33.5 bits (75), Expect = 0.32 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +1 Query: 397 PVRTRKIFVGGLASNVTEVEFXRYFEQFGMIT 492 P + RK+F+GGL+ T+ +FEQ+G +T Sbjct: 9 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLT 40
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 99.0 bits (245), Expect = 6e-21 Identities = 53/127 (41%), Positives = 79/127 (62%), Gaps = 1/127 (0%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEA-GVAERVTM 288 KLF+GG+S+ET ++ LR +F ++G +T+ V+MRD NT R+RGFGF+ +A V + Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 73 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 H +DGR+VE K+AV R+D S+ G+ + +KIFVGG+ + E Y Sbjct: 74 RPHKVDGRVVEPKRAVSRED----SQRPGAHL------TVKKIFVGGIKEDTEEHHLRDY 123 Query: 469 FEQFGMI 489 FEQ+G I Sbjct: 124 FEQYGKI 130 Score = 73.9 bits (180), Expect = 2e-13 Identities = 34/94 (36%), Positives = 57/94 (60%), Gaps = 1/94 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGGI +T+E LRDYF ++G++ IM DR +G+ RGF F+ F + +++ + Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQ 164 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGS 390 K H ++G E +KA+ + + + AS + GS Sbjct: 165 KYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS 198 Score = 33.5 bits (75), Expect = 0.32 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +1 Query: 397 PVRTRKIFVGGLASNVTEVEFXRYFEQFGMIT 492 P + RK+F+GGL+ T+ +FEQ+G +T Sbjct: 9 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLT 40
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 99.0 bits (245), Expect = 6e-21 Identities = 53/127 (41%), Positives = 79/127 (62%), Gaps = 1/127 (0%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEA-GVAERVTM 288 KLF+GG+S+ET ++ LR +F ++G +T+ V+MRD NT R+RGFGF+ +A V + Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 H +DGR+VE K+AV R+D S+ G+ + +KIFVGG+ + E Y Sbjct: 74 RPHKVDGRVVEPKRAVSRED----SQRPGAHL------TVKKIFVGGIKEDTEEHHLRDY 123 Query: 469 FEQFGMI 489 FEQ+G I Sbjct: 124 FEQYGKI 130 Score = 73.6 bits (179), Expect = 3e-13 Identities = 34/94 (36%), Positives = 57/94 (60%), Gaps = 1/94 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGGI +T+E LRDYF ++G++ IM DR +G+ RGF F+ F + +++ + Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGS 390 K H ++G E +KA+ + + + AS + GS Sbjct: 165 KYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS 198 Score = 33.5 bits (75), Expect = 0.32 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +1 Query: 397 PVRTRKIFVGGLASNVTEVEFXRYFEQFGMIT 492 P + RK+F+GGL+ T+ +FEQ+G +T Sbjct: 9 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLT 40
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 99.0 bits (245), Expect = 6e-21 Identities = 53/127 (41%), Positives = 79/127 (62%), Gaps = 1/127 (0%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEA-GVAERVTM 288 KLF+GG+S+ET ++ LR +F ++G +T+ V+MRD NT R+RGFGF+ +A V + Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 H +DGR+VE K+AV R+D S+ G+ + +KIFVGG+ + E Y Sbjct: 74 RPHKVDGRVVEPKRAVSRED----SQRPGAHL------TVKKIFVGGIKEDTEEHHLRDY 123 Query: 469 FEQFGMI 489 FEQ+G I Sbjct: 124 FEQYGKI 130 Score = 71.6 bits (174), Expect = 1e-12 Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 1/87 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGGI +T+E LRDYF ++G++ IM DR +G+ RGF F+ F + +++ + Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKN 369 K H ++G E +KA+ + + + AS + Sbjct: 165 KYHTVNGHNCEVRKALSKQEMASASSS 191 Score = 33.5 bits (75), Expect = 0.32 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +1 Query: 397 PVRTRKIFVGGLASNVTEVEFXRYFEQFGMIT 492 P + RK+F+GGL+ T+ +FEQ+G +T Sbjct: 9 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLT 40
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 98.6 bits (244), Expect = 8e-21 Identities = 54/147 (36%), Positives = 75/147 (51%), Gaps = 1/147 (0%) Frame = +1 Query: 52 TTTADRGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRA 231 +T + D KLFVGG+SWET E LRD+FG++GE+ + D TGR+ Sbjct: 37 STNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRS 96 Query: 232 RGFGFIVFAEAGVAERVT-MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRT 408 RGF FIVF ++V+ D+H+I+ + V+ KKA R Sbjct: 97 RGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKA---------------------KARH 135 Query: 409 RKIFVGGLASNVTEVEFXRYFEQFGMI 489 KIFVGGL + +++ E YF QFG I Sbjct: 136 GKIFVGGLTTEISDEEIKTYFGQFGNI 162 Score = 63.2 bits (152), Expect = 4e-10 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 1/98 (1%) Frame = +1 Query: 97 EADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF-AEAGVA 273 +A GK+FVGG++ E ++ ++ YFG+FG + E + D+ + +GF FI F +E V Sbjct: 132 KARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVT 191 Query: 274 ERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIG 387 + + K I G+ V+ K+A P+ + + G G Sbjct: 192 DLLKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRG 229
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 96.3 bits (238), Expect = 4e-20 Identities = 51/128 (39%), Positives = 79/128 (61%), Gaps = 2/128 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA-EAGVAERVTM 288 KLF+GG+S+ET +D LR++F ++G++T+ V+MRD T R+RGFGF+ ++ V ++ Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGP-VRTRKIFVGGLASNVTEVEFXR 465 H +DGR+VE K+AV R+D + PG + +KIFVGG+ + E Sbjct: 88 RPHKVDGRVVEPKRAVSREDSA-----------RPGAHLTVKKIFVGGIKEDTEEYHLRD 136 Query: 466 YFEQFGMI 489 YFE +G I Sbjct: 137 YFEGYGKI 144 Score = 70.5 bits (171), Expect = 2e-12 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGGI +T+E LRDYF +G++ +M DR +G+ RGF F+ F + +++ + Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIG 387 K H I+ E KKA+ + + AS G G Sbjct: 179 KYHTINLHNCEVKKALSKQEMQTASAQRGRGGG 211 Score = 33.5 bits (75), Expect = 0.32 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +1 Query: 397 PVRTRKIFVGGLASNVTEVEFXRYFEQFGMIT 492 P + RK+F+GGL+ T+ +FEQ+G +T Sbjct: 23 PEQLRKLFIGGLSFETTDDSLREHFEQWGKLT 54
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 96.3 bits (238), Expect = 4e-20 Identities = 53/132 (40%), Positives = 81/132 (61%), Gaps = 6/132 (4%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA-----EAGVAE 276 KLF+GG+S+ET E+ LR+Y+ ++G +T+ V+MRD + R+RGFGF+ F+ +A +A Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69 Query: 277 RVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGP-VRTRKIFVGGLASNVTEV 453 R H IDGR+VE K+AV R++ + PG V +K+FVGG+ + E Sbjct: 70 R----PHTIDGRVVEPKRAVAREESA-----------KPGAHVTVKKLFVGGIKEDTEEH 114 Query: 454 EFXRYFEQFGMI 489 YFE++G I Sbjct: 115 HLREYFEEYGKI 126 Score = 67.8 bits (164), Expect = 2e-11 Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 4/96 (4%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 KLFVGGI +T+E LR+YF +G++ I+ D+ +G+ RGF F+ F + +++ + Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQ 160 Query: 292 K-HMIDGRMVEAKKAVPR---DDQSIASKNNGSSIG 387 K H I+G E +KA+ + D N G + G Sbjct: 161 KYHTINGHNAEVRKALSKQEMQDVQNTRNNRGGNFG 196 Score = 33.9 bits (76), Expect = 0.24 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +1 Query: 409 RKIFVGGLASNVTEVEFXRYFEQFGMIT 492 RK+F+GGL+ TE Y+EQ+G +T Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLT 36
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 95.5 bits (236), Expect = 7e-20 Identities = 49/127 (38%), Positives = 79/127 (62%), Gaps = 1/127 (0%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 KLF+GG++ T E+ L+ ++G++G+V + V+MRD T R+RGFGFI + ++ + +R + Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 + H+IDG+ VEAK+A+PR ++ N + +K+FVGGL N E Y Sbjct: 93 RPHIIDGKTVEAKRALPRPERESRETN----------ISVKKLFVGGLKDNHDEECLREY 142 Query: 469 FEQFGMI 489 F QFG + Sbjct: 143 FLQFGNV 149 Score = 59.3 bits (142), Expect = 5e-09 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 KLFVGG+ DE+ LR+YF +FG V ++ D+ TG+ RGF F+ F + ++ + Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILK 183 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNG 375 K H I V+ KK++ D+ + G Sbjct: 184 KQHAIKYVHVDVKKSIYNLDKKEKQQPGG 212
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 95.5 bits (236), Expect = 7e-20 Identities = 53/138 (38%), Positives = 83/138 (60%), Gaps = 2/138 (1%) Frame = +1 Query: 82 GEDAMEADS-GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA 258 GE+ E + KLF+GG+ + T +D L+ +F ++G + + V+M+D T R+RGFGFI ++ Sbjct: 14 GEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYS 73 Query: 259 EAGVAERVTMDK-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLA 435 ++ + + + H IDGR VE K+AVPR Q I S N G+++ +K+FVGGL Sbjct: 74 QSYMIDNAQNARPHKIDGRTVEPKRAVPR--QEIDSPNAGATV--------KKLFVGGLR 123 Query: 436 SNVTEVEFXRYFEQFGMI 489 + E YF+ FG I Sbjct: 124 DDHDEECLREYFKDFGQI 141 Score = 68.2 bits (165), Expect = 1e-11 Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 KLFVGG+ + DE+ LR+YF FG++ I+ D++TG+ RGF FI F + +++ + Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ 175 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSP 393 K H I + ++ KKA+ + D + G G P Sbjct: 176 KTHSIKNKTLDVKKAIAKQDMD--RQGGGGGRGGP 208
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 95.1 bits (235), Expect = 9e-20 Identities = 50/128 (39%), Positives = 80/128 (62%), Gaps = 2/128 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAG-VAERVTM 288 KLF+GG+S+ET E+ LR+++ ++G++T+ V+MRD + R+RGFGF+ F+ V ++ Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGP-VRTRKIFVGGLASNVTEVEFXR 465 H IDGR+VE K+AV R++ + PG V +K+FVGG+ + E Sbjct: 70 RPHTIDGRVVEPKRAVAREESA-----------KPGAHVTVKKLFVGGIKEDTEEHHLRE 118 Query: 466 YFEQFGMI 489 YFE++G I Sbjct: 119 YFEEYGKI 126 Score = 70.5 bits (171), Expect = 2e-12 Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 4/96 (4%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 KLFVGGI +T+E LR+YF +G++ I+ D+ +G+ RGFGF+ F + +++ + Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQ 160 Query: 292 K-HMIDGRMVEAKKAVPR---DDQSIASKNNGSSIG 387 K H I+G E +KA+ + D N G + G Sbjct: 161 KYHTINGHNAEVRKALSKQEMQDVQNTRNNRGGNFG 196 Score = 32.7 bits (73), Expect = 0.54 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +1 Query: 409 RKIFVGGLASNVTEVEFXRYFEQFGMIT 492 RK+F+GGL+ TE ++EQ+G +T Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLT 36
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 94.7 bits (234), Expect = 1e-19 Identities = 53/139 (38%), Positives = 82/139 (58%), Gaps = 3/139 (2%) Frame = +1 Query: 82 GEDAMEADS-GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA 258 G D E + KLF+GG+S+ET +D LR++F ++G++T+ V+MRD T R+RGFGF+ ++ Sbjct: 17 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYS 76 Query: 259 -EAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGP-VRTRKIFVGGL 432 V ++ H +DGR+VE K+AV R+D + PG + +KIFVGG+ Sbjct: 77 CVEEVDASMSARPHKVDGRVVEPKRAVSREDSA-----------RPGAHLTVKKIFVGGI 125 Query: 433 ASNVTEVEFXRYFEQFGMI 489 + E Y E +G I Sbjct: 126 KEDTEEYHLRDYSESYGKI 144 Score = 71.6 bits (174), Expect = 1e-12 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGGI +T+E LRDY +G++ +M DR +G+ RGF F+ F + +++ + Sbjct: 119 KIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIG 387 K H I+G E KKA+ + + AS G G Sbjct: 179 KYHTINGHNCEVKKALSKQEMQTASAQRGRGGG 211 Score = 33.5 bits (75), Expect = 0.32 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +1 Query: 397 PVRTRKIFVGGLASNVTEVEFXRYFEQFGMIT 492 P + RK+F+GGL+ T+ +FEQ+G +T Sbjct: 23 PEQLRKLFIGGLSFETTDDSLREHFEQWGKLT 54
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 94.4 bits (233), Expect = 2e-19 Identities = 48/127 (37%), Positives = 77/127 (60%), Gaps = 1/127 (0%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 KLF+GG+ + T ++ L+ +F ++G + + V+M+D T R+RGFGFI ++ + + + Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 + H IDGR+VE K+AVPR D I S N G+++ +K+FVG L + E Y Sbjct: 92 RPHKIDGRVVEPKRAVPRQD--IDSPNAGATV--------KKLFVGALKDDHDEQSIRDY 141 Query: 469 FEQFGMI 489 F+ FG I Sbjct: 142 FQHFGNI 148 Score = 75.5 bits (184), Expect = 7e-14 Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 KLFVG + + DE +RDYF FG + + I+ D+ TG+ RGF F+ F + ++V + Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPG 396 K H ++G+MV+ KKA+P+ + + G G PG Sbjct: 183 KQHQLNGKMVDVKKALPKQND---QQGGGGGRGGPG 215 Score = 28.9 bits (63), Expect = 7.8 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 397 PVRTRKIFVGGLASNVTEVEFXRYFEQFGMI 489 P RK+F+GGL T+ +FE++G I Sbjct: 27 PEHMRKLFIGGLDYRTTDENLKAHFEKWGNI 57
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 93.2 bits (230), Expect = 3e-19 Identities = 47/128 (36%), Positives = 78/128 (60%), Gaps = 2/128 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 KLF+GG+ + T ++ L+ +F ++GE+ + V+M+D T R+RGFGFI ++ A + + Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRT-RKIFVGGLASNVTEVEFXR 465 + H +DGR+VE K+AVPR + IG P T +K+FVGG+ + E + Sbjct: 78 RPHKVDGRVVEPKRAVPR-----------TEIGRPEAGATVKKLFVGGIKEEMEENDLRD 126 Query: 466 YFEQFGMI 489 YF+Q+G + Sbjct: 127 YFKQYGTV 134 Score = 70.9 bits (172), Expect = 2e-12 Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 KLFVGGI E +E+ LRDYF ++G V A I+ D+ T + RGF F+ F + +++ + Sbjct: 109 KLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLS 168 Query: 292 K-HMIDGRMVEAKKAVPRDD 348 + H I G+ ++ KKA+P+ D Sbjct: 169 RNHQIRGKHIDVKKALPKGD 188 Score = 31.6 bits (70), Expect = 1.2 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 397 PVRTRKIFVGGLASNVTEVEFXRYFEQFGMI 489 P RK+F+GGL T+ ++FEQ+G I Sbjct: 13 PEHVRKLFIGGLDYRTTDESLKQHFEQWGEI 43
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 90.9 bits (224), Expect = 2e-18 Identities = 47/134 (35%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = +1 Query: 91 AMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGV 270 A + + K+F+GG+SW+T + L+DYF +FGEV + + D TGR+RGFGF++F E+ Sbjct: 91 AAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 150 Query: 271 AERVTMDK-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVT 447 ++V K H ++G++++ K+A ++ + PV +KIFVGGL+ + Sbjct: 151 VDKVMDQKEHKLNGKVIDPKRA--------------KAMKTKEPV--KKIFVGGLSPDTP 194 Query: 448 EVEFXRYFEQFGMI 489 E + YF FG + Sbjct: 195 EEKIREYFGGFGEV 208 Score = 61.2 bits (147), Expect = 1e-09 Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGG+S +T E+++R+YFG FGEV + D T + RGF FI F E +++ Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 K H + E K A+ + +Q + GS G G R R GG S + Y Sbjct: 243 KYHNVGLSKCEIKVAMSK-EQYQQQQQWGSRGGFAGRARGR----GGGPSQNWNQGYSNY 297 Query: 469 FEQ 477 + Q Sbjct: 298 WNQ 300
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 89.7 bits (221), Expect = 4e-18 Identities = 46/132 (34%), Positives = 78/132 (59%), Gaps = 1/132 (0%) Frame = +1 Query: 97 EADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 + + K+F+GG+SW+T + L+DYF +FGEV + + D TGR+RGFGF++F E+ + Sbjct: 93 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152 Query: 277 RVTMDK-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEV 453 +V K H ++G++++ K+A ++ + PV +KIFVGGL+ + E Sbjct: 153 KVMDQKEHKLNGKVIDPKRA--------------KAMKTKEPV--KKIFVGGLSPDTPEE 196 Query: 454 EFXRYFEQFGMI 489 + YF FG + Sbjct: 197 KIREYFGGFGEV 208 Score = 61.2 bits (147), Expect = 1e-09 Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGG+S +T E+++R+YFG FGEV + D T + RGF FI F E +++ Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 K H + E K A+ + +Q + GS G G R R GG S + Y Sbjct: 243 KYHNVGLSKCEIKVAMSK-EQYQQQQQWGSRGGFAGRARGR----GGGPSQNWNQGYSNY 297 Query: 469 FEQ 477 + Q Sbjct: 298 WNQ 300
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 88.6 bits (218), Expect = 8e-18 Identities = 45/132 (34%), Positives = 78/132 (59%), Gaps = 1/132 (0%) Frame = +1 Query: 97 EADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 + + K+F+GG+SW+T + L+DYF +FG+V + + D TGR+RGFGF++F E+ + Sbjct: 91 QREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 150 Query: 277 RVTMDK-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEV 453 +V K H ++G++++ K+A ++ + PV +KIFVGGL+ + E Sbjct: 151 KVMDQKEHKLNGKVIDPKRA--------------KAMKTKEPV--KKIFVGGLSPDTPEE 194 Query: 454 EFXRYFEQFGMI 489 + YF FG + Sbjct: 195 KIREYFGGFGEV 206 Score = 61.2 bits (147), Expect = 1e-09 Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGG+S +T E+++R+YFG FGEV + D T + RGF FI F E +++ Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 K H + E K A+ + +Q + GS G G R R GG S + Y Sbjct: 241 KYHNVGLSKCEIKVAMSK-EQYQQQQQWGSRGGFAGRARGR----GGGPSQNWNQGYSNY 295 Query: 469 FEQ 477 + Q Sbjct: 296 WNQ 298
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 87.4 bits (215), Expect = 2e-17 Identities = 46/123 (37%), Positives = 66/123 (53%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 L V G+ W+T E L++YF FGEV + +D TG ++GFGF+ F E +V + Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165 Query: 295 HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRYFE 474 HMIDGR + K +P QS P+R+RK+FVG ++TE E +F Sbjct: 166 HMIDGRWCDCK--LPNSKQS-----------QDEPLRSRKVFVGRCTEDMTEDELREFFS 212 Query: 475 QFG 483 Q+G Sbjct: 213 QYG 215 Score = 50.1 bits (118), Expect = 3e-06 Identities = 28/97 (28%), Positives = 51/97 (52%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT 285 S K+FVG + + ED LR++F ++G+V + I + R F F+ FA+ +A+ + Sbjct: 190 SRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLC 244 Query: 286 MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPG 396 + +I G V A P+ + + + +G G+PG Sbjct: 245 GEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPG 281
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 85.9 bits (211), Expect = 5e-17 Identities = 46/125 (36%), Positives = 67/125 (53%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 L V G+ W+T E L+DYF FGEV + +D TG ++GFGF+ F E +V + Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165 Query: 295 HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRYFE 474 HMIDGR + K +P QS P+R+RK+FVG ++T E ++F Sbjct: 166 HMIDGRWCDCK--LPNSKQS-----------PDEPLRSRKVFVGRCTEDMTAEELQQFFC 212 Query: 475 QFGMI 489 Q+G + Sbjct: 213 QYGEV 217 Score = 44.7 bits (104), Expect = 1e-04 Identities = 27/97 (27%), Positives = 49/97 (50%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT 285 S K+FVG + + + L+ +F ++GEV + I + R F F+ FA+ VA+ + Sbjct: 190 SRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC 244 Query: 286 MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPG 396 + +I G V A P+ + + + +G G+PG Sbjct: 245 GEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPG 281
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 83.6 bits (205), Expect = 3e-16 Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 2/128 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE-RVTM 288 KLF+GG++ +T E LR +F FG +T+ V++ + T R+R FGF+ ++ A+ + Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGP-VRTRKIFVGGLASNVTEVEFXR 465 H +DG VE K+AV R+D + PG + +K+FVGGL +V E + Sbjct: 68 SPHAVDGNTVELKRAVSREDSA-----------RPGAHAKVKKLFVGGLKGDVAEGDLIE 116 Query: 466 YFEQFGMI 489 +F QFG + Sbjct: 117 HFSQFGTV 124 Score = 71.6 bits (174), Expect = 1e-12 Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 KLFVGG+ + E L ++F +FG V +A I+ D+ +G+ RGFGF+ F A++ + Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 158 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGS 378 K H I G VE KKAVP++D GS Sbjct: 159 KFHPIQGHRVEVKKAVPKEDIYSGGGGGGS 188
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 77.4 bits (189), Expect = 2e-14 Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 2/100 (2%) Frame = +1 Query: 94 MEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVA 273 M +D GKLFVGG+S++T+E L F ++G+++E V+++DR T R+RGFGF+ F A Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60 Query: 274 E--RVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIG 387 + + M+ +DGR + +A D GS+ G Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 77.4 bits (189), Expect = 2e-14 Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 2/100 (2%) Frame = +1 Query: 94 MEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVA 273 M +D GKLFVGG+S++T+E L F ++G+++E V+++DR T R+RGFGF+ F A Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60 Query: 274 E--RVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIG 387 + + M+ +DGR + +A D GS+ G Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 77.4 bits (189), Expect = 2e-14 Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 2/100 (2%) Frame = +1 Query: 94 MEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVA 273 M +D GKLFVGG+S++T+E L F ++G+++E V+++DR T R+RGFGF+ F A Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60 Query: 274 E--RVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIG 387 + + M+ +DGR + +A D GS+ G Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 77.4 bits (189), Expect = 2e-14 Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 2/100 (2%) Frame = +1 Query: 94 MEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVA 273 M +D GKLFVGG+S++T+E L F ++G+++E V+++DR T R+RGFGF+ F A Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60 Query: 274 E--RVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIG 387 + + M+ +DGR + +A D GS+ G Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 77.4 bits (189), Expect = 2e-14 Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 2/100 (2%) Frame = +1 Query: 94 MEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVA 273 M +D GKLFVGG+S++T+E L F ++G+++E V+++DR T R+RGFGF+ F A Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60 Query: 274 E--RVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIG 387 + + M+ +DGR + +A D GS+ G Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG 100
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 76.3 bits (186), Expect = 4e-14 Identities = 38/83 (45%), Positives = 53/83 (63%), Gaps = 3/83 (3%) Frame = +1 Query: 94 MEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA---EA 264 M ++ GKLFVGG+++ TDE L D+F FG ++E V+++DR T R+RGFGFI F A Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60 Query: 265 GVAERVTMDKHMIDGRMVEAKKA 333 VA R M+ +DGR + A Sbjct: 61 SVAMR-AMNGESLDGRQIRVDHA 82
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 76.3 bits (186), Expect = 4e-14 Identities = 41/99 (41%), Positives = 54/99 (54%), Gaps = 2/99 (2%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV- 282 S KLF+GG+SW TD+ LRD F FG+V +A ++ DR TGR+RGFGF+ F + G A Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 283 -TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPG 396 MD ++GR + A R A G G G Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAPRAYGGGGGYSGGGG 132
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 74.7 bits (182), Expect = 1e-13 Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 2/98 (2%) Frame = +1 Query: 100 ADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE- 276 +D GKLF+GG+++ET+ED L F ++G ++E V+++DR T R+RGFGF+ F A+ Sbjct: 2 SDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKD 61 Query: 277 -RVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIG 387 + M+ +DGR + +A + GSS G Sbjct: 62 AMMAMNGKSVDGRQIRVDQAGKSSGERRGGYRGGSSGG 99
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 73.9 bits (180), Expect = 2e-13 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 2/82 (2%) Frame = +1 Query: 94 MEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVA 273 M ++ GKLFVGG+++ TDE L D+F FG ++E V+++DR T R+RGFGFI F A Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60 Query: 274 ERV--TMDKHMIDGRMVEAKKA 333 M+ +DGR + A Sbjct: 61 SDAMRAMNGESLDGRQIRVDHA 82
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 70.9 bits (172), Expect = 2e-12 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGG+ + T + LR YF FG++ EAV++ DR TG++RG+GF+ A+ AER D Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 292 KH-MIDGRMVEAKKA 333 + +IDGR A Sbjct: 72 PNPIIDGRKANVNLA 86 Score = 32.3 bits (72), Expect = 0.71 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +1 Query: 385 GSPGPVRTRKIFVGGLASNVTEVEFXRYFEQFGMI 489 GS KIFVGGL + T+ +YFE FG I Sbjct: 3 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDI 37
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 69.7 bits (169), Expect = 4e-12 Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGG+ + T + LR YF FG++ EAV++ DR TG++RG+GF+ A+ A+R D Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92 Query: 292 KH-MIDGRMVEAKKA 333 + +IDGR A Sbjct: 93 PNPIIDGRKANVNLA 107 Score = 32.0 bits (71), Expect = 0.92 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +1 Query: 385 GSPGPVRTRKIFVGGLASNVTEVEFXRYFEQFGMI 489 GS KIFVGGL + T+ +YFE FG I Sbjct: 24 GSRKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDI 58
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 69.3 bits (168), Expect = 5e-12 Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 3/109 (2%) Frame = +1 Query: 94 MEADS-GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGV 270 +EAD GKLF+GG++ ET+E L FG++G + E ++M+DR T ++RGF F+ F Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61 Query: 271 AERVTMDKH--MIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTR 411 A+ V D + +DG+ ++ ++A +S G P P R+R Sbjct: 62 AKDVARDMNGKSLDGKAIKVEQATKPSFES-------GRRGPPPPPRSR 103
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 68.2 bits (165), Expect = 1e-11 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 3/109 (2%) Frame = +1 Query: 94 MEADS-GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGV 270 +EAD GKLF+GG++ ET+E L FG++G + E ++M+DR T ++RGF F+ F Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61 Query: 271 AERVTMDKH--MIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTR 411 A+ D + +DG+ ++ ++A +S G P P R+R Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATKPSFES-------GRRGPPPPPRSR 103
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 67.4 bits (163), Expect = 2e-11 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 2/97 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA-EAGVAERVT- 285 + FVGG++W T+++ L F +FG++T++ I+ DR TGR+RGFGF+ F E + + + Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66 Query: 286 MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPG 396 M+ +DGR + +A R + G G G Sbjct: 67 MNGQELDGRNITVNEAQSRGSGGGGGRREGGGGGYGG 103
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 67.0 bits (162), Expect = 3e-11 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 2/108 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA-EAGVAERVT- 285 + FVGG++W TDE L F +FGE+ ++ I+ DR TGR+RGFGF+ F E + + + Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 286 MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGG 429 M+ +DGR + +A QS S G G G R + GG Sbjct: 69 MNGQDLDGRSITVNEA-----QSRGSGAGGGGRGGGGGYRGGGGYGGG 111
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 65.9 bits (159), Expect = 6e-11 Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 2/101 (1%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA-EAGVAERVT- 285 + FVGG++W TD+ L F ++GEV ++ I+ DR TGR+RGFGF+ F E + + + Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 286 MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRT 408 M+ +DGR + +A QS S G G G R+ Sbjct: 69 MNGQDLDGRSITVNEA-----QSRGSGGGGGGRGGGGGYRS 104
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 65.1 bits (157), Expect = 1e-10 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 3/109 (2%) Frame = +1 Query: 94 MEADS-GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGV 270 +EAD GKLF+GG++ ET+E L FG++G + E ++M+DR T ++RGF F+ Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPAD 61 Query: 271 AERVTMDKH--MIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTR 411 A+ D + +DG+ ++ ++A +S G P P R+R Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATKPFFES-------GRRGPPPPPRSR 103
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 63.5 bits (153), Expect = 3e-10 Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 2/97 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA-EAGVAERV-T 285 + FVGG++W T+++ L+ F +FG+V ++ I+ DR +GR+RGFGF+ F E + + + Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 286 MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPG 396 M+ +DGR++ +A QS S G G G Sbjct: 67 MNGKELDGRVITVNEA-----QSRGSGGGGGGRGGSG 98
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 63.2 bits (152), Expect = 4e-10 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA-EAGVAERV-T 285 + FVGG++W T + L F +FGEV ++ I+ DR TGR+RGFGF+ F E + + + Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66 Query: 286 MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPG 396 M+ +DGR + +A R + G G G Sbjct: 67 MNGKELDGRTITVNEAQSRGGGGGGGRGGGGYGGRGG 103
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 63.2 bits (152), Expect = 4e-10 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT-- 285 + FVGG++W TD+ L F ++G+V ++ I+ DR TGR+RGFGF+ F + + Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68 Query: 286 MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPG 396 M+ +DGR + +A QS S G G G Sbjct: 69 MNGQDLDGRSITVNEA-----QSRGSGGGGGHRGGGG 100
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 62.8 bits (151), Expect = 5e-10 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF-AEAGVAERV-T 285 + FVGG++W T+ + L F FG+V ++ ++ DR TGR+RGFGF+ F +E + + + Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68 Query: 286 MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPG 396 M+ +DGR + +A QS G G G Sbjct: 69 MNGKELDGRNITVNQA-----QSRGGGGGGGGYGGGG 100
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 61.6 bits (148), Expect = 1e-09 Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 3/143 (2%) Frame = +1 Query: 70 GRRGGEDAMEA-DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGF 246 G GG+ E + KLFVG + ++ D ++L F G V A ++ +R T R+RGFGF Sbjct: 41 GVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGF 100 Query: 247 IVFAEAGVAERVT--MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIF 420 + + AE+ ++ + +DGR + KA PR A + + + +++ Sbjct: 101 VTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEP--------SCRVY 152 Query: 421 VGGLASNVTEVEFXRYFEQFGMI 489 VG L +V + F + G + Sbjct: 153 VGNLPWDVDTSRLEQLFSEHGKV 175 Score = 59.3 bits (142), Expect = 5e-09 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF-AEAGVAERV 282 S +++VG + W+ D RL F G+V A ++ DR TGR+RGFGF+ +E+ V + + Sbjct: 148 SCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAI 207 Query: 283 -TMDKHMIDGRMVEAKKAVPR 342 +D +DGR V A R Sbjct: 208 AALDGQTLDGRAVRVNVAEER 228
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 61.2 bits (147), Expect = 1e-09 Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 23/169 (13%) Frame = +1 Query: 52 TTTADRGRRGGEDAMEADSGKL-------------FVGGISWETDEDRLRDYFGRFGEVT 192 +++ D +R E A E K+ FVG +SW D+ L F +G + Sbjct: 231 SSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIV 290 Query: 193 EAVIMRDRNTGRARGFGFIVF-----AEAGVAERVTMDKHMIDGRMVEAKKAVPR--DDQ 351 A ++ D +GR++G+G++ F A+A VA T + IDGRMV + PR + Q Sbjct: 291 GARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKE---IDGRMVNLDLSNPRPANPQ 347 Query: 352 SIASK---NNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRYFEQFGMI 489 A + N G + P +FVG L+ N TE + F G I Sbjct: 348 PYAQQRAGNFGDQLSEPSDT----VFVGNLSFNATEDDLSTAFGGCGDI 392 Score = 54.7 bits (130), Expect = 1e-07 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 1/115 (0%) Frame = +1 Query: 88 DAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAG 267 D + S +FVG +S+ ED L FG G++ + D +GR +GFG++ F++ Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418 Query: 268 VAER-VTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGG 429 A++ V M+ H I GR + PR S+ G G R F GG Sbjct: 419 SAKKCVEMNGHFIAGRPCRLDFSTPRTGG--GSRGGRGGFGGRGGFGGRGGFGGG 471
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 61.2 bits (147), Expect = 1e-09 Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 2/79 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF-AEAGVAERV-T 285 + FVGG++W T + L + F +GE+ ++ ++ DR TGR+RGFGF+ F +E + + + Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68 Query: 286 MDKHMIDGRMVEAKKAVPR 342 M+ +DGR + +A R Sbjct: 69 MNGKELDGRNITVNQAQSR 87
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 60.5 bits (145), Expect = 2e-09 Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA-EAGVAERV 282 S +++VG I W D+ RL F G+V A ++ DR TGR+RGFGF+ A EA +++ + Sbjct: 229 SYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAI 288 Query: 283 -TMDKHMIDGRMVEAKKAVPR 342 +D +DGR + A R Sbjct: 289 ANLDGQSLDGRTIRVNVAEDR 309 Score = 54.7 bits (130), Expect = 1e-07 Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Frame = +1 Query: 70 GRRGGEDAMEADS-----------GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDR 216 G G D +EAD KLFVG + ++ D + L F + G V A ++ +R Sbjct: 112 GDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNR 171 Query: 217 NTGRARGFGFIVFAEAGVAERVT--MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGS 390 +T ++RGFGF+ + AE+ +++ ++GR++ KA R ++ Sbjct: 172 DTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFE---- 227 Query: 391 PGPVRTRKIFVGGLASNVTEVEFXRYFEQFGMI 489 ++ +I+VG + + + + F + G + Sbjct: 228 ----QSYRIYVGNIPWGIDDARLEQLFSEHGKV 256
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 60.1 bits (144), Expect = 3e-09 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 1/101 (0%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 K+FVGG+S +T E+++R+YFG FGEV + D T + RGF FI F E +++ Sbjct: 35 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 94 Query: 292 K-HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTR 411 K H + E K A+ + +Q + GS G G R R Sbjct: 95 KYHNVGLSKCEIKVAMSK-EQYQQQQQWGSRGGFAGRARGR 134 Score = 30.8 bits (68), Expect = 2.1 Identities = 18/66 (27%), Positives = 34/66 (51%) Frame = +1 Query: 292 KHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRYF 471 +H ++G++++ K+A ++ + PV+ KIFVGGL+ + E + YF Sbjct: 11 EHKLNGKVIDPKRA--------------KAMKTKEPVK--KIFVGGLSPDTPEEKIREYF 54 Query: 472 EQFGMI 489 FG + Sbjct: 55 GGFGEV 60
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 60.1 bits (144), Expect = 3e-09 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF-AEAGVAERV-T 285 +++VG I W+ D+ RL F G+V A ++ DR +GR+RGFGF+ +EA ++E + Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251 Query: 286 MDKHMIDGRMVEAKKAVPR 342 +D +DGR + A R Sbjct: 252 LDGQTLDGRTIRVNAAEER 270 Score = 57.4 bits (137), Expect = 2e-08 Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 2/132 (1%) Frame = +1 Query: 100 ADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAER 279 ++ KLFVG + ++ D + L F + G V A ++ +R T R+RGFGF+ + A++ Sbjct: 94 SEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADK 153 Query: 280 VT--MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEV 453 ++ ++GR++ KA PR + + T +I+VG + ++ + Sbjct: 154 AVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQP--------TYRIYVGNIPWDIDDA 205 Query: 454 EFXRYFEQFGMI 489 + F + G + Sbjct: 206 RLEQVFSEHGKV 217
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 59.3 bits (142), Expect = 5e-09 Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 9/108 (8%) Frame = +1 Query: 94 MEADS-GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGV 270 +EAD GKLF+GG++ ET+E L+ FG+ G ++E ++++DR T ++RGF FI F Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPAD 60 Query: 271 AERVTMDKH--MIDGRMVEAKKAVPRDDQS------IASKNNGSSIGS 390 A+ D + + G+ ++ ++A QS AS N S GS Sbjct: 61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGS 108
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 58.5 bits (140), Expect = 9e-09 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 2/93 (2%) Frame = +1 Query: 70 GRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFI 249 G GG + +++VG +SW D+ L F G+V EA ++ DR++GR++GFGF+ Sbjct: 191 GYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFV 250 Query: 250 VFAEAGVAERV--TMDKHMIDGRMVEAKKAVPR 342 + + + ++D +DGR + +A R Sbjct: 251 TYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283 Score = 53.9 bits (128), Expect = 2e-07 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 13/148 (8%) Frame = +1 Query: 85 EDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEA 264 E + AD KLFVG + + D +L F G V ++ D+ TGR+RGFGF+ + Sbjct: 84 EQSFSADL-KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142 Query: 265 GVAERVT--MDKHMIDGRMVEAKKAVP---RDD-------QSIASKNNG-SSIGSPGPVR 405 E + + +DGR + P R+D S S +G G G Sbjct: 143 SEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGS 202 Query: 406 TRKIFVGGLASNVTEVEFXRYFEQFGMI 489 +++VG L+ V ++ F + G + Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKV 230
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 58.5 bits (140), Expect = 9e-09 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 2/93 (2%) Frame = +1 Query: 70 GRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFI 249 G RGG S +++VG ++W D+D L F G+V +A ++ DR++GR+RGFGF+ Sbjct: 177 GSRGGGSF--DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFV 234 Query: 250 VFAEAGVAERV--TMDKHMIDGRMVEAKKAVPR 342 ++ A ++D ++GR + A R Sbjct: 235 TYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 267 Score = 58.5 bits (140), Expect = 9e-09 Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 7/143 (4%) Frame = +1 Query: 82 GEDAMEADSG-----KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGF 246 G+D +E + K+FVG + + D L + F R G V ++ D+ TGR+RGFGF Sbjct: 73 GDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGF 132 Query: 247 IVFAEAGVAERV--TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIF 420 + + E + + +DGR + P + + +S GS G + +++ Sbjct: 133 VTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSR-GGGSFDSSNRVY 191 Query: 421 VGGLASNVTEVEFXRYFEQFGMI 489 VG LA V + F + G + Sbjct: 192 VGNLAWGVDQDALETLFSEQGKV 214
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 58.5 bits (140), Expect = 9e-09 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 2/93 (2%) Frame = +1 Query: 70 GRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFI 249 G RGG S +++VG ++W D+D L F G+V +A ++ DR++GR+RGFGF+ Sbjct: 183 GSRGGGSF--DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFV 240 Query: 250 VFAEAGVAERV--TMDKHMIDGRMVEAKKAVPR 342 ++ A ++D ++GR + A R Sbjct: 241 TYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 273 Score = 55.8 bits (133), Expect = 6e-08 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 18/153 (11%) Frame = +1 Query: 85 EDAMEADSG-----------KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRA 231 ED + D G K+FVG + + D L + F R G V ++ D+ TGR+ Sbjct: 68 EDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRS 127 Query: 232 RGFGFIVFAEAGVAERV--TMDKHMIDGRMVEAKKAVP---RDDQSIASKNN--GSSIGS 390 RGFGF+ + E + + +DGR + P R++ S ++ G S G Sbjct: 128 RGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGG 187 Query: 391 PGPVRTRKIFVGGLASNVTEVEFXRYFEQFGMI 489 + +++VG LA V + F + G + Sbjct: 188 GSFDSSNRVYVGNLAWGVDQDALETLFSEQGKV 220
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 58.2 bits (139), Expect = 1e-08 Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 2/93 (2%) Frame = +1 Query: 70 GRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFI 249 G G + +L+VG +SW D+ L + F G+V EA ++ DR++GR++GFGF+ Sbjct: 244 GSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFV 303 Query: 250 VFAEAGVAERV--TMDKHMIDGRMVEAKKAVPR 342 + + ++ +++ +DGR + +A R Sbjct: 304 TLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336 Score = 48.5 bits (114), Expect = 1e-05 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 4/97 (4%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT-- 285 KLFVG +S+ D +L F G V ++ D+ TGR+RGFGF+ + A E Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 286 MDKHMIDGR--MVEAKKAVPRDDQSIASKNNGSSIGS 390 + + +GR V A P+ ++S + GS Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGS 196
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 58.2 bits (139), Expect = 1e-08 Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 15/158 (9%) Frame = +1 Query: 61 ADRGRRGGEDAMEADSG-KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARG 237 +D G G D + S KLFVG + E+ +R YF + G V E +++D+ TG+ +G Sbjct: 103 SDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQG 162 Query: 238 FGFIVFAEAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTR-- 411 F+ +A + A+R H N + G GPV+ R Sbjct: 163 CCFVKYATSKDADRAIRALH-----------------------NQITLPGGTGPVQVRYA 199 Query: 412 ------------KIFVGGLASNVTEVEFXRYFEQFGMI 489 K+FVG L TE E F QFG + Sbjct: 200 DGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHV 237 Score = 36.6 bits (83), Expect = 0.037 Identities = 18/54 (33%), Positives = 31/54 (57%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVA 273 KLFVG ++ + E + + F +FG V + +MRD ++RG GF+ ++ A Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETA 264
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 58.2 bits (139), Expect = 1e-08 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 2/93 (2%) Frame = +1 Query: 70 GRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFI 249 G RGG S +++VG +SW D+ L++ F G V +A ++ DR++GR+RGFGF+ Sbjct: 197 GARGGRSV--DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFV 254 Query: 250 VFAEAGVAERV--TMDKHMIDGRMVEAKKAVPR 342 ++ A +++ +DGR + A R Sbjct: 255 TYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287 Score = 48.5 bits (114), Expect = 1e-05 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 20/146 (13%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA--EAGVAERVT 285 KLFVG + + D L F R G V ++ D+ +GR+RGFGF+ + E A Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148 Query: 286 MDKHMIDGRMVEAKKA---VPRDDQSIASKNNGSSI---------------GSPGPVRTR 411 + + IDGR + R++ S G+S G + Sbjct: 149 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN 208 Query: 412 KIFVGGLASNVTEVEFXRYFEQFGMI 489 +++VG L+ V ++ F + G + Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNV 234
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 57.8 bits (138), Expect = 2e-08 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--T 285 +++VG + W+ D RL F G+V EA ++ DR TGR+RGFGF+ ++ Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304 Query: 286 MDKHMIDGRMVEAKKAVPR 342 +D ++GR + A R Sbjct: 305 LDGQNLEGRAIRVNVAEER 323 Score = 53.1 bits (126), Expect = 4e-07 Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 2/132 (1%) Frame = +1 Query: 100 ADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAER 279 ++ KLFVG ++++ + L F + G V A ++ +R T ++RGFGF+ + AE Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206 Query: 280 VT--MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEV 453 +++ ++GR++ KA PR + + P +++VG L +V Sbjct: 207 AVEKFNRYDLNGRLLTVNKAAPRGSR----PERAPRVYEP----AFRVYVGNLPWDVDNG 258 Query: 454 EFXRYFEQFGMI 489 + F + G + Sbjct: 259 RLEQLFSEHGKV 270
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 57.0 bits (136), Expect = 3e-08 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 2/93 (2%) Frame = +1 Query: 70 GRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFI 249 G RGG S +++VG +SW D+ L++ F G V +A ++ DR++GR+RGFGF+ Sbjct: 196 GARGGRSV--DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFV 253 Query: 250 VFAEAGVAERV--TMDKHMIDGRMVEAKKAVPR 342 ++ + +++ +DGR + A R Sbjct: 254 TYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286 Score = 50.4 bits (119), Expect = 3e-06 Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 20/146 (13%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA--EAGVAERVT 285 KLFVG + + D L F R G V ++ D+ TGR+RGFGF+ + E A Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147 Query: 286 MDKHMIDGRMVEAKKA---VPRDDQSIASKNNGSSI---------------GSPGPVRTR 411 + + IDGR + R++ S G+S G + Sbjct: 148 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN 207 Query: 412 KIFVGGLASNVTEVEFXRYFEQFGMI 489 +++VG L+ V ++ F + G + Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNV 233
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 56.6 bits (135), Expect = 4e-08 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 8/133 (6%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAER--VTM 288 +FVG +S E + ++ F FG++++A +++D TG+++G+GF+ F AE V M Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175 Query: 289 DKHMIDGRMVEA-----KKAVPRDDQSIASKN-NGSSIGSPGPVRTRKIFVGGLASNVTE 450 + GR + K P+ Q +K + + + ++ GG+AS +T+ Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235 Query: 451 VEFXRYFEQFGMI 489 + F FG I Sbjct: 236 QLMRQTFSPFGQI 248
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 56.2 bits (134), Expect = 5e-08 Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 8/133 (6%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAER--VTM 288 +FVG +S E + ++ F FG++++A +++D TG+++G+GF+ F AE V M Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGS------SIGSPGPVRTRKIFVGGLASNVTE 450 + GR + A + +++ N + + + + ++ GG+AS +T+ Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 218 Query: 451 VEFXRYFEQFGMI 489 + F FG I Sbjct: 219 QLMRQTFSPFGQI 231
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 55.8 bits (133), Expect = 6e-08 Identities = 26/50 (52%), Positives = 36/50 (72%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF 255 S KL++GG+S TDE L+D F F VTEA +M ++ TGR+RG+GF+ F Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 55.1 bits (131), Expect = 1e-07 Identities = 23/56 (41%), Positives = 38/56 (67%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAER 279 +L+VG + + ED LR F FG++ V+M+D +TGR++G+GFI F+++ A R Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARR 319 Score = 50.4 bits (119), Expect = 3e-06 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 3/134 (2%) Frame = +1 Query: 97 EADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAE---AG 267 E D+ +F ++ L D+F G+V + I+ DRN+ R++G ++ F E Sbjct: 162 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 221 Query: 268 VAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVT 447 +A +T + + +V+A +A + +A+ N G+ GP+R ++VG L N+T Sbjct: 222 LAIGLTGQRLLGVPIIVQASQA---EKNRLAAMANNLQKGNGGPMR---LYVGSLHFNIT 275 Query: 448 EVEFXRYFEQFGMI 489 E FE FG I Sbjct: 276 EDMLRGIFEPFGKI 289
>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)| Length = 225 Score = 54.7 bits (130), Expect = 1e-07 Identities = 24/48 (50%), Positives = 33/48 (68%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF 255 K+FVGG+S +T E+++R+YFG FGEV + D T + RGF FI F Sbjct: 173 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 220 Score = 30.0 bits (66), Expect = 3.5 Identities = 21/81 (25%), Positives = 42/81 (51%) Frame = +1 Query: 247 IVFAEAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVG 426 ++F E+ V ++V + K++ ++++ K+A ++ + PV+ KIFVG Sbjct: 135 LLFKESNV-DKVMIKKNINSWKVIDPKRA--------------KAMKTKEPVK--KIFVG 177 Query: 427 GLASNVTEVEFXRYFEQFGMI 489 GL+ + E + YF FG + Sbjct: 178 GLSPDTPEEKIREYFGGFGEV 198
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 54.7 bits (130), Expect = 1e-07 Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 2/95 (2%) Frame = +1 Query: 70 GRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFI 249 G +GG A S LFV G+S +T E+ L++ F G V A I+ DR+TG ++GFGF+ Sbjct: 489 GPQGGGRGGSAQSKTLFVRGLSEDTTEETLKEAFD--GSVN-ARIVTDRDTGASKGFGFV 545 Query: 250 VF--AEAGVAERVTMDKHMIDGRMVEAKKAVPRDD 348 F AE A + M+ IDG V A P+ D Sbjct: 546 DFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGD 580 Score = 46.2 bits (108), Expect = 5e-05 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 2/134 (1%) Frame = +1 Query: 79 GGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA 258 G + E DS L V +S+ ED LR+ F + I +N GRA+GF FI F+ Sbjct: 404 GNKKGPEGDSKVLVVNNLSYSATEDSLREVFEK-----ATSIRIPQNQGRAKGFAFIEFS 458 Query: 259 EAGVAERV--TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGL 432 A A+ + + I+GR + + + G G +++ +FV GL Sbjct: 459 SAEDAKDAMDSCNNTEIEGRSIRLE---------FSQGGGPQGGGRGGSAQSKTLFVRGL 509 Query: 433 ASNVTEVEFXRYFE 474 + + TE F+ Sbjct: 510 SEDTTEETLKEAFD 523
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 54.3 bits (129), Expect = 2e-07 Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 2/105 (1%) Frame = +1 Query: 67 RGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGF 246 +G RG +A S LFV G+S +T E+ L++ F G V A I+ DR TG ++GFGF Sbjct: 559 QGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGF 615 Query: 247 IVF--AEAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNG 375 + F E A + M+ IDG V A P+ + + G Sbjct: 616 VDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGG 660
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 54.3 bits (129), Expect = 2e-07 Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 2/105 (1%) Frame = +1 Query: 67 RGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGF 246 +G RG +A S LFV G+S +T E+ L++ F G V A I+ DR TG ++GFGF Sbjct: 558 QGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGF 614 Query: 247 IVF--AEAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNG 375 + F E A + M+ IDG V A P+ + + G Sbjct: 615 VDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGG 659
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 54.3 bits (129), Expect = 2e-07 Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 2/105 (1%) Frame = +1 Query: 67 RGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGF 246 +G RG +A S LFV G+S +T E+ L++ F G V A I+ DR TG ++GFGF Sbjct: 557 QGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGF 613 Query: 247 IVF--AEAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNG 375 + F E A + M+ IDG V A P+ + + G Sbjct: 614 VDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGG 658
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 54.3 bits (129), Expect = 2e-07 Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 5/100 (5%) Frame = +1 Query: 61 ADRGRRGGEDAMEA---DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRA 231 A GR G+ + DS L V +S +T E+ LRD F RFG + + +D+ TGRA Sbjct: 183 AGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRA 242 Query: 232 RGFGFIVF--AEAGVAERVTMDKHMIDGRMVEAKKAVPRD 345 +GF F+ + + + R +D + + ++ + + PRD Sbjct: 243 KGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSKPRD 282
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 53.9 bits (128), Expect = 2e-07 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--T 285 +L+VG + + ED LR F FG + +M D TGR++G+GFI F+++ A++ Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310 Query: 286 MDKHMIDGRMVEAKKAVPRDDQSIAS 363 ++ + GR ++ R D S AS Sbjct: 311 LNGFELAGRPMKVGHVTERTDASSAS 336 Score = 49.7 bits (117), Expect = 4e-06 Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 1/132 (0%) Frame = +1 Query: 97 EADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAE-AGVA 273 E D+ +F ++ L ++F G+V + ++ DRN+ R+RG ++ F + + V Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVR 208 Query: 274 ERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEV 453 + + + G + + + +++ A NN GS GP+R ++VG L N+TE Sbjct: 209 LAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQK-GSAGPMR---LYVGSLHFNITED 264 Query: 454 EFXRYFEQFGMI 489 FE FG I Sbjct: 265 MLRGIFEPFGRI 276
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 53.9 bits (128), Expect = 2e-07 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--T 285 +L+VG + + ED LR F FG + +M D TGR++G+GFI F+++ A++ Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310 Query: 286 MDKHMIDGRMVEAKKAVPRDDQSIAS 363 ++ + GR ++ R D S AS Sbjct: 311 LNGFELAGRPMKVGHVTERTDASSAS 336 Score = 48.5 bits (114), Expect = 1e-05 Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 1/132 (0%) Frame = +1 Query: 97 EADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAE-AGVA 273 E D+ +F ++ L ++F G+V + ++ DRN+ R++G ++ F + + V Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVP 208 Query: 274 ERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEV 453 + + + G + + + +++ A NN GS GP+R ++VG L N+TE Sbjct: 209 LAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQK-GSAGPMR---LYVGSLHFNITED 264 Query: 454 EFXRYFEQFGMI 489 FE FG I Sbjct: 265 MLRGIFEPFGRI 276
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 53.9 bits (128), Expect = 2e-07 Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 2/105 (1%) Frame = +1 Query: 67 RGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGF 246 +G RG +A S LFV G+S +T E+ L++ F G V A I+ DR TG ++GFGF Sbjct: 557 QGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGF 613 Query: 247 IVF--AEAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNG 375 + F E A + M+ IDG V A P+ + + G Sbjct: 614 VDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGG 658
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 53.9 bits (128), Expect = 2e-07 Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 2/105 (1%) Frame = +1 Query: 67 RGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGF 246 +G RG +A S LFV G+S +T E+ L++ F G V A I+ DR TG ++GFGF Sbjct: 560 QGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGF 616 Query: 247 IVF--AEAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNG 375 + F E A + M+ IDG V A P+ + + G Sbjct: 617 VDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGG 661
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 53.5 bits (127), Expect = 3e-07 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Frame = +1 Query: 52 TTTADRGRRGGEDAME---ADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNT 222 +TT +GR GE+ E ADSG+LFV +S+ + E+ L F +G ++E D T Sbjct: 378 STTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLT 437 Query: 223 GRARGFGFI--VFAEAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSS 381 + +GF F+ +F E V +D + GRM+ + + + S + GSS Sbjct: 438 KKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQEANAPGSS 492 Score = 33.9 bits (76), Expect = 0.24 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEV-TEAVIMRDRNTGRARGFGFIVF 255 + K+ V I ++ ++ +R+ F FGE+ T + + TG RGFGF+ F Sbjct: 823 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDF 873
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 53.5 bits (127), Expect = 3e-07 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 2/127 (1%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 +FVG +SW D++ L+ F G V A ++ +R T R+RG+G++ F AE+ M Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 IDGR + + + + + G + +F+G L+ N Sbjct: 230 QGKEIDGRPINCDMST---SKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFEL 286 Query: 469 FEQFGMI 489 F + G + Sbjct: 287 FAKHGEV 293 Score = 47.8 bits (112), Expect = 2e-05 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%) Frame = +1 Query: 64 DRGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFG 243 DR ++ G+ E S LF+G +S+ D D + + F + GEV I T + +GFG Sbjct: 253 DRAKKFGDTPSEP-SDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFG 311 Query: 244 FIVFAEAGVAERV--TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPG 396 ++ F+ A++ + ID R V + PR + N+G GS G Sbjct: 312 YVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPN------NDGGRGGSRG 358
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 52.8 bits (125), Expect = 5e-07 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 8/137 (5%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV 282 D +FVG +S E + ++ F FG +++A +++D TG+++G+GF+ F AE Sbjct: 104 DHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 163 Query: 283 --TMDKHMIDGRMVEA-----KKAVPRDD-QSIASKNNGSSIGSPGPVRTRKIFVGGLAS 438 M + GR + K P+ +S + + + S ++ GG+ S Sbjct: 164 IQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTS 223 Query: 439 NVTEVEFXRYFEQFGMI 489 +TE + F FG I Sbjct: 224 GLTEQLMRQTFSPFGQI 240
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 52.4 bits (124), Expect = 7e-07 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 2/87 (2%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV 282 ++G+LF+ IS+E E+ R F ++G + E I D TG+++GF ++ F + A R Sbjct: 308 ETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRA 367 Query: 283 --TMDKHMIDGRMVEAKKAVPRDDQSI 357 ++DK + GR++ A + D + Sbjct: 368 YRSLDKQIFQGRLLHILPADKKKDHRL 394 Score = 47.8 bits (112), Expect = 2e-05 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT-- 285 +L V G+ E++LR++F + G+VT+ +M+ RN G +R F FI + A AER Sbjct: 3 RLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRN-GESRKFAFIGYKSADAAERAVKY 61 Query: 286 MDKHMIDGRMVEAKKAVPRDDQSI 357 +K ID +E + A D ++ Sbjct: 62 FNKSFIDTARIEVEFAKTFSDPTV 85
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 52.4 bits (124), Expect = 7e-07 Identities = 30/130 (23%), Positives = 68/130 (52%), Gaps = 4/130 (3%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 ++V ++ T +D L++ FG +G++T AV+M+D G+++GFGF+ F A A R ++ Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESL 275 Query: 289 DKHMIDGRMVEAKKAVPRDDQ--SIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFX 462 + H D + +A + ++ + + + + ++ ++V L ++++ + Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 335 Query: 463 RYFEQFGMIT 492 F FG +T Sbjct: 336 EIFSPFGTVT 345 Score = 43.1 bits (100), Expect = 4e-04 Identities = 32/137 (23%), Positives = 53/137 (38%) Frame = +1 Query: 79 GGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA 258 GG A + + L+VG + + + +L D FG+ G V + RD T R+ G+G++ F Sbjct: 26 GGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFT 85 Query: 259 EAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLAS 438 A R + + I + D S+ G+ IF+ L Sbjct: 86 NPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGN------------IFIKNLDE 133 Query: 439 NVTEVEFXRYFEQFGMI 489 ++ F FG I Sbjct: 134 SIDHKALHDTFSSFGNI 150
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 52.0 bits (123), Expect = 9e-07 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Frame = +1 Query: 94 MEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVA 273 +EADS +FVG I+ + +++ D+F G++ ++ DRNTG +G+G+I F Sbjct: 59 LEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYR 118 Query: 274 ERVTMDKHMIDGRMVEAKK-AVPRDDQSIASKN 369 E+ ++G ++ KK AV R +I N Sbjct: 119 EKAL----QLNGGELKGKKIAVSRKRTNIPGFN 147
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 51.2 bits (121), Expect = 1e-06 Identities = 23/65 (35%), Positives = 42/65 (64%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 ++FVGGI ++T+E+ LR +F ++G V E I+ DR G ++G+GFI F A+++ + Sbjct: 34 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQE 92 Query: 292 KHMID 306 ++ Sbjct: 93 AEKLN 97 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +1 Query: 367 NNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRYFEQFGMI 489 NN +S G V +IFVGG+ E + ++F Q+G + Sbjct: 19 NNPTSGPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSV 59
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 51.2 bits (121), Expect = 1e-06 Identities = 32/146 (21%), Positives = 67/146 (45%), Gaps = 4/146 (2%) Frame = +1 Query: 67 RGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGF 246 R R+ +A++A+ +++ + E E D FG+FGE+T +++D+N + RGFGF Sbjct: 247 RERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQN-DKPRGFGF 305 Query: 247 IVFAEAGVAERVT--MDKHMIDGRMVEAKKAVPRD--DQSIASKNNGSSIGSPGPVRTRK 414 + +A A++ ++ G+ + +A + ++ + + + + Sbjct: 306 VNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVN 365 Query: 415 IFVGGLASNVTEVEFXRYFEQFGMIT 492 +F+ L V + F FG IT Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTIT 391 Score = 45.4 bits (106), Expect = 8e-05 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT--M 288 LF+ + E D++RL+ F FG +T A IM D G+++GFGF+ + A + M Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEM 424 Query: 289 DKHMIDGR 312 ++ M+ G+ Sbjct: 425 NQRMLAGK 432
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 51.2 bits (121), Expect = 1e-06 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 7/89 (7%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAER- 279 ++G+LF+ I + ED R F +GE+ E I D TG+++GF +++F A A Sbjct: 328 ETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATA 387 Query: 280 -VTMDKHMIDGRMV-----EAKKAVPRDD 348 V +DK + GR++ +AKK+ D+ Sbjct: 388 FVELDKQIFQGRLLHILPADAKKSHKLDE 416
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 50.8 bits (120), Expect = 2e-06 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA--EAGVAER 279 +G+LF+ I + + ED + F +GE+ E + D TG ++GF +++FA E V Sbjct: 324 TGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAY 383 Query: 280 VTMDKHMIDGRMVEAKKAVPRDDQSI 357 + +DK + GR++ A D + Sbjct: 384 IELDKQIFQGRLLHILAADEMKDHRL 409 Score = 35.4 bits (80), Expect = 0.084 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%) Frame = +1 Query: 67 RGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGF 246 +G G ++ +A +GK+ V + +E + + F FG++ ++V + + ARGF F Sbjct: 724 QGNAGSQEKKKAKNGKIIVKNLPFEATRKDVFELFNSFGQL-KSVRVPKKFDKSARGFAF 782 Query: 247 IVFAEAGVAERVTMDK----HMIDGRMV 318 + F AE MD+ H++ R+V Sbjct: 783 VEFVLPKEAEN-AMDQLQGVHLLGRRLV 809
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 50.8 bits (120), Expect = 2e-06 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Frame = +1 Query: 97 EADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 E L V + ++ L+ FG GE+ ++RD+ TG++ G+GF+ + + AE Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 277 RV--TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTE 450 + T++ + + ++ A P S +R ++V GL +T+ Sbjct: 95 KAINTLNGLRLQTKTIKVSYARP----------------SSASIRDANLYVSGLPKTMTQ 138 Query: 451 VEFXRYFEQFGMI 489 E + F Q+G I Sbjct: 139 KELEQLFSQYGRI 151 Score = 43.5 bits (101), Expect = 3e-04 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIV---FAEAGVA 273 +FV ++ + DE L FG FG VT ++RD NT + +GFGF+ + EA +A Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333 Score = 34.3 bits (77), Expect = 0.19 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 L+V G+ + L F ++G + + I+ D+ TG +RG GFI F + AE Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 50.8 bits (120), Expect = 2e-06 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Frame = +1 Query: 97 EADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 E L V + ++ L+ FG GE+ ++RD+ TG++ G+GF+ + + AE Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 277 RV--TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTE 450 + T++ + + ++ A P S +R ++V GL +T+ Sbjct: 95 KAINTLNGLRLQTKTIKVSYARP----------------SSASIRDANLYVSGLPKTMTQ 138 Query: 451 VEFXRYFEQFGMI 489 E + F Q+G I Sbjct: 139 KELEQLFSQYGRI 151 Score = 43.5 bits (101), Expect = 3e-04 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIV---FAEAGVA 273 +FV ++ + DE L FG FG VT ++RD NT + +GFGF+ + EA +A Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333 Score = 34.3 bits (77), Expect = 0.19 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 L+V G+ + L F ++G + + I+ D+ TG +RG GFI F + AE Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 50.8 bits (120), Expect = 2e-06 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Frame = +1 Query: 97 EADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 E L V + ++ L+ FG GE+ ++RD+ TG++ G+GF+ + + AE Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 277 RV--TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTE 450 + T++ + + ++ A P S +R ++V GL +T+ Sbjct: 95 KAINTLNGLRLQTKTIKVSYARP----------------SSASIRDANLYVSGLPKTMTQ 138 Query: 451 VEFXRYFEQFGMI 489 E + F Q+G I Sbjct: 139 KELEQLFSQYGRI 151 Score = 43.5 bits (101), Expect = 3e-04 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIV---FAEAGVA 273 +FV ++ + DE L FG FG VT ++RD NT + +GFGF+ + EA +A Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 334 Score = 34.3 bits (77), Expect = 0.19 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 L+V G+ + L F ++G + + I+ D+ TG +RG GFI F + AE Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 50.4 bits (119), Expect = 3e-06 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 2/135 (1%) Frame = +1 Query: 91 AMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGV 270 A + L V + ++ R FG GE+ ++RD+ TG++ G+GF+ + + Sbjct: 45 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104 Query: 271 AERV--TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNV 444 AE+ T++ + + ++ A P S +R ++V GL + Sbjct: 105 AEKAINTLNGLRLQTKTIKVSYARP----------------SSASIRDANLYVSGLPKTM 148 Query: 445 TEVEFXRYFEQFGMI 489 T+ E + F Q+G I Sbjct: 149 TQKELEQLFSQYGRI 163 Score = 43.1 bits (100), Expect = 4e-04 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIV---FAEAGVA 273 +FV +S ++DE L FG FG V ++RD NT + +GFGF+ + EA +A Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 359 Score = 34.3 bits (77), Expect = 0.19 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 L+V G+ + L F ++G + + I+ D+ TG +RG GFI F + AE Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 192
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 50.4 bits (119), Expect = 3e-06 Identities = 22/65 (33%), Positives = 41/65 (63%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 ++FVGGI ++T+E LR +F ++G V E I+ DR G ++G+GF+ F A+++ + Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 292 KHMID 306 ++ Sbjct: 93 AEKLN 97 Score = 31.6 bits (70), Expect = 1.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +1 Query: 367 NNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRYFEQFGMI 489 NN +S G V +IFVGG+ E + ++F Q+G + Sbjct: 19 NNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSV 59
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 50.4 bits (119), Expect = 3e-06 Identities = 22/65 (33%), Positives = 41/65 (63%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 ++FVGGI ++T+E LR +F ++G V E I+ DR G ++G+GF+ F A+++ + Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 292 KHMID 306 ++ Sbjct: 93 AEKLN 97 Score = 31.6 bits (70), Expect = 1.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +1 Query: 367 NNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRYFEQFGMI 489 NN +S G V +IFVGG+ E + ++F Q+G + Sbjct: 19 NNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSV 59
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 50.4 bits (119), Expect = 3e-06 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 2/135 (1%) Frame = +1 Query: 91 AMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGV 270 A + L V + ++ R FG GE+ ++RD+ TG++ G+GF+ + + Sbjct: 33 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92 Query: 271 AERV--TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNV 444 AE+ T++ + + ++ A P S +R ++V GL + Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARP----------------SSASIRDANLYVSGLPKTM 136 Query: 445 TEVEFXRYFEQFGMI 489 T+ E + F Q+G I Sbjct: 137 TQKELEQLFSQYGRI 151 Score = 43.1 bits (100), Expect = 4e-04 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIV---FAEAGVA 273 +FV +S ++DE L FG FG V ++RD NT + +GFGF+ + EA +A Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 347 Score = 34.3 bits (77), Expect = 0.19 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 L+V G+ + L F ++G + + I+ D+ TG +RG GFI F + AE Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 50.1 bits (118), Expect = 3e-06 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 2/107 (1%) Frame = +1 Query: 85 EDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF--A 258 + AM+ +FVG I +E E++L+D F G V ++ DR TG+ +G+GF + Sbjct: 8 DPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 259 EAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGP 399 E ++ ++ GR + A AS+ N + S GP Sbjct: 68 ETALSAMRNLNGREFSGRALRVDNA--------ASEKNKEELKSLGP 106
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 50.1 bits (118), Expect = 3e-06 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 2/107 (1%) Frame = +1 Query: 85 EDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF--A 258 + AM+ +FVG I +E E++L+D F G V ++ DR TG+ +G+GF + Sbjct: 8 DPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 259 EAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGP 399 E ++ ++ GR + A AS+ N + S GP Sbjct: 68 ETALSAMRNLNGREFSGRALRVDNA--------ASEKNKEELKSLGP 106
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 50.1 bits (118), Expect = 3e-06 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 2/127 (1%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 L V + ++ R FG GE+ ++RD+ TG++ G+GF+ + + AE+ T+ Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 + + + ++ A P S +R ++V GL +T+ E + Sbjct: 108 NGLRLQTKTIKVSYARP----------------SSASIRDANLYVSGLPKTMTQKELEQL 151 Query: 469 FEQFGMI 489 F Q+G I Sbjct: 152 FSQYGRI 158 Score = 43.1 bits (100), Expect = 4e-04 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIV---FAEAGVA 273 +FV +S ++DE L FG FG V ++RD NT + +GFGF+ + EA +A Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 354 Score = 34.3 bits (77), Expect = 0.19 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 L+V G+ + L F ++G + + I+ D+ TG +RG GFI F + AE Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 187
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 49.7 bits (117), Expect = 4e-06 Identities = 29/139 (20%), Positives = 61/139 (43%), Gaps = 2/139 (1%) Frame = +1 Query: 79 GGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA 258 G A + L V + +D + FG G++ ++RD+ TG++ G+GF+ ++ Sbjct: 29 GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88 Query: 259 EAGVAERV--TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGL 432 + A++ T++ + + ++ A P S +R ++V GL Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARP----------------SSASIRDANLYVSGL 132 Query: 433 ASNVTEVEFXRYFEQFGMI 489 +++ E + F Q+G I Sbjct: 133 PKTMSQKEMEQLFSQYGRI 151 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIV---FAEAGVA 273 +FV +S E DE L FG FG VT ++RD T + +GFGF+ + EA +A Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMA 341 Score = 34.7 bits (78), Expect = 0.14 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 L+V G+ + + F ++G + + I+ D+ TG +RG GFI F + AE Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAE 180
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 49.7 bits (117), Expect = 4e-06 Identities = 29/139 (20%), Positives = 61/139 (43%), Gaps = 2/139 (1%) Frame = +1 Query: 79 GGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA 258 G A + L V + +D + FG G++ ++RD+ TG++ G+GF+ ++ Sbjct: 29 GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88 Query: 259 EAGVAERV--TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGL 432 + A++ T++ + + ++ A P S +R ++V GL Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARP----------------SSASIRDANLYVSGL 132 Query: 433 ASNVTEVEFXRYFEQFGMI 489 +++ E + F Q+G I Sbjct: 133 PKTMSQKEMEQLFSQYGRI 151 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIV---FAEAGVA 273 +FV +S E DE L FG FG VT ++RD T + +GFGF+ + EA +A Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMA 341 Score = 33.9 bits (76), Expect = 0.24 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 L+V G+ + + F ++G + + I+ D+ TG +RG GFI F + AE Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 49.7 bits (117), Expect = 4e-06 Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 2/116 (1%) Frame = +1 Query: 148 EDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TMDKHMIDGRMVE 321 ++ L+ FG GE+ ++RD+ TG++ G+GF+ + + AE+ T++ + + ++ Sbjct: 52 QEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 111 Query: 322 AKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRYFEQFGMI 489 A P S +R ++V GL +T+ E + F Q+G I Sbjct: 112 VSYARP----------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 151 Score = 43.5 bits (101), Expect = 3e-04 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIV---FAEAGVA 273 +FV ++ + DE L FG FG VT ++RD NT + +GFGF+ + EA +A Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333 Score = 34.3 bits (77), Expect = 0.19 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 L+V G+ + L F ++G + + I+ D+ TG +RG GFI F + AE Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 49.7 bits (117), Expect = 4e-06 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 8/133 (6%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 +FVG +S + + ++ F FG +++A +++D TG+++G+GF+ F AE M Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 289 DKHMIDGRMVEA-----KKAVPRDD-QSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTE 450 + GR + K P+ +S + + + + ++ GG+ S +TE Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227 Query: 451 VEFXRYFEQFGMI 489 + F FG I Sbjct: 228 QLMRQTFSPFGQI 240
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 49.7 bits (117), Expect = 4e-06 Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 2/130 (1%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV- 282 SG +F+ + + D L D F FG++ + I D N G+++GFGF+ F E G A+ Sbjct: 124 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAI 182 Query: 283 -TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEF 459 ++ +++G+ + + R ++ + ++V + S T+ +F Sbjct: 183 DALNGMLLNGQEIYVAPHLSRKERDSQLEET--------KAHYTNLYVKNINSETTDEQF 234 Query: 460 XRYFEQFGMI 489 F +FG I Sbjct: 235 QELFAKFGPI 244 Score = 44.3 bits (103), Expect = 2e-04 Identities = 20/61 (32%), Positives = 36/61 (59%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 LFV + D+++L + F +G +T A +MR N G+++GFGF+ F+ A + +K Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTEN-GKSKGFGFVCFSTPEEATKAITEK 381 Query: 295 H 297 + Sbjct: 382 N 382
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 49.7 bits (117), Expect = 4e-06 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT--M 288 +++ + D+ RLR+ F FG +M D +TGR+RGFGF+ + A++ M Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTR--KIFVGGLASNVTEVEFX 462 + ++GRM+ +A R ++ K I R + ++V L + + Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311 Query: 463 RYFEQFGMIT 492 + F +G IT Sbjct: 312 KEFSPYGTIT 321 Score = 42.0 bits (97), Expect = 9e-04 Identities = 23/71 (32%), Positives = 39/71 (54%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 L+V + D+DRLR F +G +T A +M + G ++GFGF+ F+ A + + Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTE- 352 Query: 295 HMIDGRMVEAK 327 ++GR+V K Sbjct: 353 --MNGRIVSTK 361
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 49.7 bits (117), Expect = 4e-06 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA--EAGVAERVTM 288 LFV GI+ ED L+ F +FG VT IMR+ T +RGFGF+ F+ E + + Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162 Query: 289 DKHMIDGRMVEAKKA 333 + GR++ +KA Sbjct: 163 NSQEFYGRVLNVQKA 177 Score = 29.6 bits (65), Expect = 4.6 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 5/79 (6%) Frame = +1 Query: 271 AERVTMDKHMIDG-----RMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLA 435 A + M+ H +D + + + P ++ + K S +FV G+A Sbjct: 50 AGSIAMNVHQLDTAGEPLQSMNEDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIA 109 Query: 436 SNVTEVEFXRYFEQFGMIT 492 S + E E + F +FG +T Sbjct: 110 SRMQEDELQQIFSKFGTVT 128
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 49.3 bits (116), Expect = 6e-06 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 2/96 (2%) Frame = +1 Query: 67 RGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGF 246 +G S LFV G+S +T E+ LR+ F G ++ A I+ DR+TG ++GFGF Sbjct: 539 KGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGF 595 Query: 247 IVFA--EAGVAERVTMDKHMIDGRMVEAKKAVPRDD 348 + F+ E A + M+ IDG V A P+ + Sbjct: 596 VDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGE 631
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 49.3 bits (116), Expect = 6e-06 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT--M 288 +++ + D+ RL++ F FG +M D N+GR+RGFGF+ + A++ M Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEM 251 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTR--KIFVGGLASNVTEVEFX 462 + ++GRMV +A R ++ K I R + ++V L + + Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311 Query: 463 RYFEQFGMIT 492 + F +G IT Sbjct: 312 KEFSPYGTIT 321 Score = 40.4 bits (93), Expect = 0.003 Identities = 22/71 (30%), Positives = 38/71 (53%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 L+V + D+DRLR F +G +T +M + G ++GFGF+ F+ A + + Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTE- 352 Query: 295 HMIDGRMVEAK 327 ++GR+V K Sbjct: 353 --MNGRIVSTK 361
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 49.3 bits (116), Expect = 6e-06 Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 2/100 (2%) Frame = +1 Query: 82 GEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF-- 255 G ++ S LFV G+S +T E+ L++ F G V A I+ DR TG ++GFGF+ F Sbjct: 559 GSNSRSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNS 615 Query: 256 AEAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNG 375 E A + M+ IDG V A P+ + + G Sbjct: 616 EEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGG 655
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 49.3 bits (116), Expect = 6e-06 Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEA--GVAER 279 +G+LF+ I + + E+ R F FGE+ E + D TG+++GF +++F ++ V Sbjct: 344 TGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAY 403 Query: 280 VTMDKHMIDGRMV 318 V +DK + GR++ Sbjct: 404 VELDKQIFQGRLL 416 Score = 29.3 bits (64), Expect = 6.0 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT 285 SGK+ V + +E + + F FG++ ++V + + ARGF F+ F AE Sbjct: 762 SGKIIVKNLPFEATRKDVFELFNSFGQL-KSVRVPKKFDKSARGFAFVEFLLPKEAEN-A 819 Query: 286 MDK----HMIDGRMV 318 MD+ H++ R+V Sbjct: 820 MDQLHGVHLLGRRLV 834
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 49.3 bits (116), Expect = 6e-06 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 LFVGGI + DE+ +R++F ++G V E I+ R G +G+GF+ F+E + + Sbjct: 49 LFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRG-GICKGYGFVYFSEDVDIQTIVDQP 107 Query: 295 HMIDGRMVEAKKAV--PRDDQSIASKNNGSS 381 G+ ++ A+ R +S++S G S Sbjct: 108 ISFKGKKLKLGPAIMKERSSRSVSSPMIGPS 138
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 48.9 bits (115), Expect = 7e-06 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF--AEAGVAERVT 285 KL+V +SW LRD F A ++ DR++GR+RGFGFI F AEA + T Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277 Query: 286 MDKHMIDGR 312 M++ ++GR Sbjct: 278 MNEVELEGR 286 Score = 43.9 bits (102), Expect = 2e-04 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 6/92 (6%) Frame = +1 Query: 85 EDAMEADS---GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF 255 E+ +E++S G+L+VG + + +L + F G V I+ DR T R+RGF F+ Sbjct: 103 EERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTM 162 Query: 256 AEAGVAERV--TMDKHMIDGRMVEAK-KAVPR 342 A+ D + GR V+ VPR Sbjct: 163 GSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPR 194
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 48.9 bits (115), Expect = 7e-06 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Frame = +1 Query: 52 TTTADRGRRGGEDAME---ADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNT 222 TT + +GR GE+ E A+SG+LFV + + + E+ L F ++G ++E D T Sbjct: 380 TTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLT 439 Query: 223 GRARGFGFI--VFAEAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSS 381 + +GF FI +F E V +D + GRM+ + + + S + GSS Sbjct: 440 KKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSS 494 Score = 33.1 bits (74), Expect = 0.41 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEV-TEAVIMRDRNTGRARGFGFIVFAEAGVAER 279 + K+ V I ++ +R+ F FGE+ T + + TG RGFGF+ F A+R Sbjct: 831 TSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKR 889
>NOP12_SCHPO (O13741) Nucleolar protein 12| Length = 438 Score = 48.9 bits (115), Expect = 7e-06 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 2/111 (1%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTM-- 288 +FVG +++E +E+ L YFG G + I+RD T +GF +I F + ++ + Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASN 441 +K M +GR + +A +SI G R RK+ G A N Sbjct: 332 EKKMPEGRTLRIMRAKSTKPKSITRSKRGDEKTRTLQGRARKLI--GKAGN 380 Score = 29.6 bits (65), Expect = 4.6 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 2/117 (1%) Frame = +1 Query: 145 DEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDKHMIDGRMVEA 324 D L +F +FG V +++ R A F + +ER T++ +++ A Sbjct: 181 DYKDLTKHFRQFGAV-DSIRFRSLAFSEAIPRKVAFFEKKFHSERDTVNAYIVFRDSSSA 239 Query: 325 KKAVPRDDQSIASKN-NGSSIGSPGPVRTRK-IFVGGLASNVTEVEFXRYFEQFGMI 489 + A+ + ++ S+ P P T++ +FVG LA E RYF G I Sbjct: 240 RSALSLNGTMFMDRHLRVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSI 296
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 48.9 bits (115), Expect = 7e-06 Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT--M 288 +++ + D++RL+D FG+FG +M D +G+++GFGF+ F A++ M Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTR--KIFVGGLASNVTEVEFX 462 + ++G+ + +A + ++ K + R + ++V L + + Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 463 RYFEQFGMIT 492 + F FG IT Sbjct: 312 KEFSPFGTIT 321 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/71 (33%), Positives = 40/71 (56%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 L+V + D++RLR F FG +T A +M + GR++GFGF+ F+ A + + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE- 352 Query: 295 HMIDGRMVEAK 327 ++GR+V K Sbjct: 353 --MNGRIVATK 361 Score = 34.3 bits (77), Expect = 0.19 Identities = 17/57 (29%), Positives = 27/57 (47%) Frame = +1 Query: 109 GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAER 279 G +F+ + D L D F FG + ++ D N ++G+GF+ F AER Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAER 153
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 48.9 bits (115), Expect = 7e-06 Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT--M 288 +++ + D++RL+D FG+FG +M D +G+++GFGF+ F A++ M Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTR--KIFVGGLASNVTEVEFX 462 + ++G+ + +A + ++ K + R + ++V L + + Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 463 RYFEQFGMIT 492 + F FG IT Sbjct: 312 KEFSPFGTIT 321 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/71 (33%), Positives = 40/71 (56%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 L+V + D++RLR F FG +T A +M + GR++GFGF+ F+ A + + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE- 352 Query: 295 HMIDGRMVEAK 327 ++GR+V K Sbjct: 353 --MNGRIVATK 361 Score = 34.3 bits (77), Expect = 0.19 Identities = 17/57 (29%), Positives = 27/57 (47%) Frame = +1 Query: 109 GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAER 279 G +F+ + D L D F FG + ++ D N ++G+GF+ F AER Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAER 153
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 48.9 bits (115), Expect = 7e-06 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 3/83 (3%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV---T 285 ++VG +S++ E L F +G V + DR TGR RGFGF+ EA E Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVEL-EADAEETAAIEA 61 Query: 286 MDKHMIDGRMVEAKKAVPRDDQS 354 +D GR ++ KA PR+++S Sbjct: 62 LDGAEWMGRDLKVNKAKPRENRS 84
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 48.9 bits (115), Expect = 7e-06 Identities = 26/83 (31%), Positives = 48/83 (57%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FVGGI +E +R YF ++G V E I+ DR TG ++G+GF+ F + +++ + Sbjct: 38 VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSFLDNVDVQKIVESQ 96 Query: 295 HMIDGRMVEAKKAVPRDDQSIAS 363 + G+ ++ A+ R Q++ S Sbjct: 97 ISVHGKRLKLGPAI-RKQQNLCS 118 Score = 32.3 bits (72), Expect = 0.71 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = +1 Query: 319 EAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRYFEQFGMI 489 EA+ +D + +S + G + +FVGG+ + E E YFEQ+G + Sbjct: 6 EAQCGSISEDNTHSSTTCQGYVLPEGKIMPNTVFVGGIDIRMNEAEIRSYFEQYGTV 62
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 48.9 bits (115), Expect = 7e-06 Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT--M 288 +++ + D++RL+D FG+FG +M D +G+++GFGF+ F A++ M Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTR--KIFVGGLASNVTEVEFX 462 + ++G+ + +A + ++ K + R + ++V L + + Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311 Query: 463 RYFEQFGMIT 492 + F FG IT Sbjct: 312 KAFSPFGTIT 321 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/71 (33%), Positives = 40/71 (56%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 L+V + D++RLR F FG +T A +M + GR++GFGF+ F+ A + + Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE- 352 Query: 295 HMIDGRMVEAK 327 ++GR+V K Sbjct: 353 --MNGRIVATK 361 Score = 32.0 bits (71), Expect = 0.92 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Frame = +1 Query: 109 GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT- 285 G +FV + + L D FG + ++ D N ++G+GF+ F AER Sbjct: 99 GNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIK 156 Query: 286 -MDKHMIDGRMV 318 M+ +++GR V Sbjct: 157 KMNGMLLNGRKV 168
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 48.5 bits (114), Expect = 1e-05 Identities = 43/141 (30%), Positives = 61/141 (43%), Gaps = 19/141 (13%) Frame = +1 Query: 67 RGRRGGEDAMEA------------DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMR 210 RG R G ME DS +LFVG + + DE+ L+++F FG V E I Sbjct: 305 RGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINT 364 Query: 211 DRNTGRARGFGFIVFAEAGVAERVTMDKH-MIDGRM---VEAKK---AVPRDDQSIASKN 369 G+ FGF+VF ++ +R+ + K M G + VE KK A R+ + Sbjct: 365 KGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDR 424 Query: 370 NGSSIGSPGPVRTRKIFVGGL 432 GP R I GG+ Sbjct: 425 RDIRRNDRGPGGPRGIVGGGM 445
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 48.5 bits (114), Expect = 1e-05 Identities = 43/141 (30%), Positives = 61/141 (43%), Gaps = 19/141 (13%) Frame = +1 Query: 67 RGRRGGEDAMEA------------DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMR 210 RG R G ME DS +LFVG + + DE+ L+++F FG V E I Sbjct: 305 RGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINT 364 Query: 211 DRNTGRARGFGFIVFAEAGVAERVTMDKH-MIDGRM---VEAKK---AVPRDDQSIASKN 369 G+ FGF+VF ++ +R+ + K M G + VE KK A R+ + Sbjct: 365 KGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDR 424 Query: 370 NGSSIGSPGPVRTRKIFVGGL 432 GP R I GG+ Sbjct: 425 RDIRRNDRGPGGPRGIVGGGM 445
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 48.5 bits (114), Expect = 1e-05 Identities = 24/78 (30%), Positives = 43/78 (55%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FVGGI DE +R +F R+G V E I+ DR TG ++G+GF+ F +++ + Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVESQ 100 Query: 295 HMIDGRMVEAKKAVPRDD 348 G+ ++ A+ + + Sbjct: 101 INFHGKKLKLGPAIRKQN 118
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 48.5 bits (114), Expect = 1e-05 Identities = 24/78 (30%), Positives = 43/78 (55%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FVGGI DE +R +F R+G V E I+ DR TG ++G+GF+ F +++ + Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVESQ 100 Query: 295 HMIDGRMVEAKKAVPRDD 348 G+ ++ A+ + + Sbjct: 101 INFHGKKLKLGPAIRKQN 118
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 48.5 bits (114), Expect = 1e-05 Identities = 24/78 (30%), Positives = 43/78 (55%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FVGGI DE +R +F R+G V E I+ DR TG ++G+GF+ F +++ + Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQ 100 Query: 295 HMIDGRMVEAKKAVPRDD 348 G+ ++ A+ + + Sbjct: 101 INFHGKKLKLGPAIRKQN 118
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 48.1 bits (113), Expect = 1e-05 Identities = 28/106 (26%), Positives = 50/106 (47%) Frame = +1 Query: 85 EDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEA 264 + A++ +FVG I +E E++L+D F G V ++ DR TG+ +G+GF + + Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD- 66 Query: 265 GVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPV 402 E ++GR + + S +K S+G+ PV Sbjct: 67 --QETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPV 110
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 48.1 bits (113), Expect = 1e-05 Identities = 28/106 (26%), Positives = 50/106 (47%) Frame = +1 Query: 85 EDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEA 264 + A++ +FVG I +E E++L+D F G V ++ DR TG+ +G+GF + + Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD- 66 Query: 265 GVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPV 402 E ++GR + + S +K S+G+ PV Sbjct: 67 --QETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPV 110
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 48.1 bits (113), Expect = 1e-05 Identities = 28/106 (26%), Positives = 50/106 (47%) Frame = +1 Query: 85 EDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEA 264 + A++ +FVG I +E E++L+D F G V ++ DR TG+ +G+GF + + Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD- 66 Query: 265 GVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPV 402 E ++GR + + S +K S+G+ PV Sbjct: 67 --QETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPV 110
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/78 (30%), Positives = 43/78 (55%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FVGGI DE +R +F R+G V E I+ DR TG ++G+GF+ F +++ + Sbjct: 42 VFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVESQ 100 Query: 295 HMIDGRMVEAKKAVPRDD 348 G+ ++ A+ + + Sbjct: 101 INFHGKKLKLGPAIRKQN 118
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 48.1 bits (113), Expect = 1e-05 Identities = 28/106 (26%), Positives = 50/106 (47%) Frame = +1 Query: 85 EDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEA 264 + A++ +FVG I +E E++L+D F G V ++ DR TG+ +G+GF + + Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD- 66 Query: 265 GVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPV 402 E ++GR + + S +K S+G+ PV Sbjct: 67 --QETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPV 110
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Frame = +1 Query: 85 EDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAE- 261 E+ MEAD+ ++VG + + + L +F G V I+ D+ +G +GF +I F++ Sbjct: 159 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK 218 Query: 262 AGVAERVTMDKHMIDGRMVEAKKAVPR 342 V + +D+ + GR + K +P+ Sbjct: 219 ESVRTSLALDESLFRGRQI---KVIPK 242
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Frame = +1 Query: 85 EDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAE- 261 E+ MEAD+ ++VG + + + L +F G V I+ D+ +G +GF +I F++ Sbjct: 163 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK 222 Query: 262 AGVAERVTMDKHMIDGRMVEAKKAVPR 342 V + +D+ + GR + K +P+ Sbjct: 223 ESVRTSLALDESLFRGRQI---KVIPK 246
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Frame = +1 Query: 85 EDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAE- 261 E+ MEAD+ ++VG + + + L +F G V I+ D+ +G +GF +I F++ Sbjct: 163 EEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK 222 Query: 262 AGVAERVTMDKHMIDGRMVEAKKAVPR 342 V + +D+ + GR + K +P+ Sbjct: 223 ESVRTSLALDESLFRGRQI---KVIPK 246
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 48.1 bits (113), Expect = 1e-05 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 16/141 (11%) Frame = +1 Query: 115 LFVGGISWET-DEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 +FVG + T D D + + T A I+ D TG +R +GF+ F+ + M Sbjct: 184 IFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMH 243 Query: 292 K--HMIDGRMVEAKKAVPRDDQSIAS-------------KNNGSSIGSPGPVRTRKIFVG 426 ++ GR + A P+ SIA+ + + S P+ T +FVG Sbjct: 244 MQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTT-VFVG 302 Query: 427 GLASNVTEVEFXRYFEQFGMI 489 GLASN++E + F+ FG I Sbjct: 303 GLASNLSEKDLQVCFQPFGRI 323 Score = 30.0 bits (66), Expect = 3.5 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 2/95 (2%) Frame = +1 Query: 1 AAPRLXXXXXXXXXXXXTTTADRGRRGGEDAMEAD--SGKLFVGGISWETDEDRLRDYFG 174 A+P+ T+ R+ +D D + +FVGG++ E L+ F Sbjct: 259 ASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQ 318 Query: 175 RFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAER 279 FG + I +G GF+ ++E AE+ Sbjct: 319 PFGRILNIKI------PFGKGCGFVQYSEKSAAEK 347
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 48.1 bits (113), Expect = 1e-05 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 4/138 (2%) Frame = +1 Query: 88 DAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDR--NTGRARGFGFIVF-- 255 D + D+ K+FVG + E LR+ F ++G V E I+RDR N +++G F+ F Sbjct: 9 DQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYT 68 Query: 256 AEAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLA 435 +A + + + + M + P D + KNN V RK+F+G ++ Sbjct: 69 RKAALEAQNALHNMKVLPGMHHPIQMKPADSE----KNNA--------VEDRKLFIGMIS 116 Query: 436 SNVTEVEFXRYFEQFGMI 489 TE + F FG I Sbjct: 117 KKCTENDIRVMFSSFGQI 134 Score = 37.7 bits (86), Expect = 0.017 Identities = 21/62 (33%), Positives = 33/62 (53%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 KLF+G IS + E+ +R F FG++ E I+R + G +RG F+ F +A+ Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRTMAQTAIKA 167 Query: 292 KH 297 H Sbjct: 168 MH 169 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/51 (27%), Positives = 24/51 (47%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF 255 + LF+ + E + L F FG V A + D+ T ++ FGF+ + Sbjct: 399 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 449
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 48.1 bits (113), Expect = 1e-05 Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 11/152 (7%) Frame = +1 Query: 70 GRRGGEDAMEADSG-------KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGR 228 GR + EA+ G +++ + D++RL++ FG+FG +M D + G+ Sbjct: 171 GRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GK 229 Query: 229 ARGFGFIVFAEAGVAERVT--MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPV 402 ++GFGF+ F A++ M+ ++G+ + +A + ++ K + Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 289 Query: 403 RTR--KIFVGGLASNVTEVEFXRYFEQFGMIT 492 R + ++V L + + + F FG IT Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTIT 321 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/71 (33%), Positives = 40/71 (56%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 L+V + D++RLR F FG +T A +M + GR++GFGF+ F+ A + + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE- 352 Query: 295 HMIDGRMVEAK 327 ++GR+V K Sbjct: 353 --MNGRIVATK 361 Score = 35.0 bits (79), Expect = 0.11 Identities = 26/125 (20%), Positives = 52/125 (41%) Frame = +1 Query: 109 GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTM 288 G +F+ + D L D F FG + ++ D N ++G+GF+ F AER Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAI- 155 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 ++G ++ +K +S K + +G+ T +++ ++ + Sbjct: 156 --EKMNGMLLNDRKVFVGRFKS--QKEREAELGARAKEFT-NVYIKNFGEDMDDERLKEL 210 Query: 469 FEQFG 483 F +FG Sbjct: 211 FGKFG 215
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 47.8 bits (112), Expect = 2e-05 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT--M 288 +++ + D+ RLR+ F FG +M D ++GR+RGFGF+ + A++ M Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTR--KIFVGGLASNVTEVEFX 462 + ++GRM+ +A R ++ K I R + ++V L + + Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311 Query: 463 RYFEQFGMIT 492 + F +G IT Sbjct: 312 KEFLPYGTIT 321 Score = 40.4 bits (93), Expect = 0.003 Identities = 23/71 (32%), Positives = 39/71 (54%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 L+V + D+DRLR F +G +T A +M + G ++GFGF+ F+ A + + Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTE- 352 Query: 295 HMIDGRMVEAK 327 ++GR+V K Sbjct: 353 --MNGRIVSTK 361
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 47.8 bits (112), Expect = 2e-05 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 12/113 (10%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV 282 DS +LF+G + E D+ L+D+F FG V E +R + G+ FGF+VF ++ ++V Sbjct: 336 DSHQLFIGNLPHEVDKSELKDFFQNFGNVVE---LRINSGGKLPNFGFVVFDDSEPVQKV 392 Query: 283 TMDKHM---------IDGRMVEAKKAVPRDDQSI---ASKNNGSSIGSPGPVR 405 ++ + ++ + A + R D + G S G GP R Sbjct: 393 LSNRPIMFRGAVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGPSGGMRGPPR 445
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 47.8 bits (112), Expect = 2e-05 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 4/138 (2%) Frame = +1 Query: 88 DAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDR--NTGRARGFGFIVF-- 255 D + D+ K+FVG + E LR+ F ++G V E ++RDR N +++G F+ F Sbjct: 9 DQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYT 68 Query: 256 AEAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLA 435 +A + + + + M + P D + KNN V RK+F+G ++ Sbjct: 69 RKAALEAQNALHNMKVLPGMHHPIQMKPADSE----KNNA--------VEDRKLFIGMIS 116 Query: 436 SNVTEVEFXRYFEQFGMI 489 TE + F FG I Sbjct: 117 KKCTENDIRVMFSSFGQI 134 Score = 38.5 bits (88), Expect = 0.010 Identities = 21/62 (33%), Positives = 33/62 (53%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 KLF+G IS + E+ +R F FG++ E I+R + G +RG F+ F +A+ Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKA 167 Query: 292 KH 297 H Sbjct: 168 MH 169 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/51 (27%), Positives = 24/51 (47%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF 255 + LF+ + E + L F FG V A + D+ T ++ FGF+ + Sbjct: 399 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 449
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 47.8 bits (112), Expect = 2e-05 Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 8/145 (5%) Frame = +1 Query: 79 GGEDAMEADSG------KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGF 240 G ED M D L V + +D LR F GEV A ++RD+ G + G+ Sbjct: 4 GYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGY 63 Query: 241 GFIVFAEAGVAERV--TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRK 414 GF+ + A AER T++ + + ++ A P S ++ Sbjct: 64 GFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP----------------SSEVIKDAN 107 Query: 415 IFVGGLASNVTEVEFXRYFEQFGMI 489 +++ GL +T+ + F +FG I Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRI 132 Score = 43.5 bits (101), Expect = 3e-04 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIV---FAEAGVA 273 +F+ + + DE L FG FG VT ++RD NT + +GFGF+ + EA +A Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMA 301 Score = 37.7 bits (86), Expect = 0.017 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 L++ G+ + + D F RFG + + ++ D+ TG +RG FI F + AE Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAE 161
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 47.4 bits (111), Expect = 2e-05 Identities = 19/59 (32%), Positives = 37/59 (62%) Frame = +1 Query: 85 EDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAE 261 + + + S LFVG + +ET + L+++FG+ G++ +M +TG+ +GFGF+ F + Sbjct: 220 QSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 47.4 bits (111), Expect = 2e-05 Identities = 28/130 (21%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT--M 288 +++ + D++RL++ FG+FG +M D + G+++GFGF+ F A++ M Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 251 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTR--KIFVGGLASNVTEVEFX 462 + ++G+ + +A + ++ K + R + ++V L + + Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 463 RYFEQFGMIT 492 + F FG IT Sbjct: 312 KEFSPFGTIT 321 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/71 (33%), Positives = 40/71 (56%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 L+V + D++RLR F FG +T A +M + GR++GFGF+ F+ A + + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE- 352 Query: 295 HMIDGRMVEAK 327 ++GR+V K Sbjct: 353 --MNGRIVATK 361 Score = 34.7 bits (78), Expect = 0.14 Identities = 26/125 (20%), Positives = 52/125 (41%) Frame = +1 Query: 109 GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTM 288 G +F+ + D L D F FG + ++ D N ++G+GF+ F AER Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAI- 155 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 ++G ++ +K +S K + +G+ T +++ ++ + Sbjct: 156 --EKMNGMLLNDRKVFVGRFKS--RKEREAELGARAKEFT-NVYIKNFGEDMDDERLKEL 210 Query: 469 FEQFG 483 F +FG Sbjct: 211 FGKFG 215
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 47.0 bits (110), Expect = 3e-05 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 5/131 (3%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--T 285 +L+VG I + D LR G + A +M D+ +GR+R FGF+ A V Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144 Query: 286 MDKHMIDGRMVE---AKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVE 456 ++ I GR ++ +K + D + + + SP K+++G LA VT Sbjct: 145 LNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESP-----YKVYIGNLAKTVTNEL 199 Query: 457 FXRYFEQFGMI 489 +F + G + Sbjct: 200 LKDFFSEKGKV 210 Score = 43.5 bits (101), Expect = 3e-04 Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = +1 Query: 85 EDAMEADSG-KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAE 261 ED+ +S K+++G ++ + L+D+F G+V A + R T ++ GFGF+ F+ Sbjct: 175 EDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSS 234 Query: 262 AGVAERV--TMDKHMIDGRMVEAKKA 333 E ++ +++G+ + KA Sbjct: 235 EEEVEAAIQALNNSVLEGQKIRVNKA 260
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 47.0 bits (110), Expect = 3e-05 Identities = 32/146 (21%), Positives = 70/146 (47%), Gaps = 10/146 (6%) Frame = +1 Query: 85 EDAMEADSG------KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGF 246 +D ++SG ++V + E +D L+ FG++G+++ AV+M+D+ +G +R FGF Sbjct: 211 QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGF 269 Query: 247 IVFA--EAGVAERVTMDKHMIDGRMVEAKKAVPRDD--QSIASKNNGSSIGSPGPVRTRK 414 + F EA M+ + ++ +A + D + + K I ++ Sbjct: 270 VNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN 329 Query: 415 IFVGGLASNVTEVEFXRYFEQFGMIT 492 +++ L +V + + F ++G +T Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVT 355 Score = 37.7 bits (86), Expect = 0.017 Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 2/96 (2%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA--EAGVAERVTM 288 L++ + ++++L++ F +G VT +M + + G +RGFGF+ ++ E + M Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEM 388 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPG 396 + MI + + A ++++ ++ + I SPG Sbjct: 389 NGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPG 424 Score = 37.7 bits (86), Expect = 0.017 Identities = 27/130 (20%), Positives = 59/130 (45%), Gaps = 2/130 (1%) Frame = +1 Query: 109 GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV-- 282 G +F+ + D L + F FG + + D GR++G+GF+ F + A+ Sbjct: 132 GNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAID 190 Query: 283 TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFX 462 ++ +++ + V V R D+ +++ ++ S ++V L +T+ E Sbjct: 191 KLNGMLLNDKQVFVGHFVRRQDR---ARSESGAVPS-----FTNVYVKNLPKEITDDELK 242 Query: 463 RYFEQFGMIT 492 + F ++G I+ Sbjct: 243 KTFGKYGDIS 252
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 47.0 bits (110), Expect = 3e-05 Identities = 38/140 (27%), Positives = 65/140 (46%) Frame = +1 Query: 70 GRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFI 249 G R G D+++ IS T E LR++F FG++ + ++RD++T ++G F+ Sbjct: 12 GFRPGVDSLDEPPNSRIFLVISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFV 71 Query: 250 VFAEAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGG 429 FA + A R + H G+ + P S+++GS TR IFV Sbjct: 72 KFARSSQACRAMEEMH---GQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTR-IFV-M 126 Query: 430 LASNVTEVEFXRYFEQFGMI 489 + + TE + F+ +G I Sbjct: 127 IPKSYTEEDLREKFKVYGDI 146
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 46.6 bits (109), Expect = 4e-05 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 L V +++ T D LR F ++G V + I RDR T +RGF F+ F + AE M Sbjct: 15 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74 Query: 289 DKHMIDGRMVEAKKA 333 D ++DGR + + A Sbjct: 75 DGAVLDGRELRVQMA 89
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 46.6 bits (109), Expect = 4e-05 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 L V +++ T D LR F ++G V + I RDR T +RGF F+ F + AE M Sbjct: 15 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74 Query: 289 DKHMIDGRMVEAKKA 333 D ++DGR + + A Sbjct: 75 DGAVLDGRELRVQMA 89
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 46.6 bits (109), Expect = 4e-05 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 L V +++ T D LR F ++G V + I RDR T +RGF F+ F + AE M Sbjct: 15 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74 Query: 289 DKHMIDGRMVEAKKA 333 D ++DGR + + A Sbjct: 75 DGAVLDGRELRVQMA 89
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 46.6 bits (109), Expect = 4e-05 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 L V +++ T D LR F ++G V + I RDR T +RGF F+ F + AE M Sbjct: 15 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74 Query: 289 DKHMIDGRMVEAKKA 333 D ++DGR + + A Sbjct: 75 DGAVLDGRELRVQMA 89
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 46.6 bits (109), Expect = 4e-05 Identities = 28/130 (21%), Positives = 62/130 (47%), Gaps = 4/130 (3%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT--M 288 +++ E D++ L++ F +FG+ +MRD N G+++GFGF+ + + A + M Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 251 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTR--KIFVGGLASNVTEVEFX 462 + I G+++ +A + ++ K + R + +++ L + + + Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311 Query: 463 RYFEQFGMIT 492 + F FG IT Sbjct: 312 KEFSPFGSIT 321 Score = 42.4 bits (98), Expect = 7e-04 Identities = 22/71 (30%), Positives = 41/71 (57%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 L++ + D+++LR F FG +T A +M + GR++GFGF+ F+ A + + Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 352 Query: 295 HMIDGRMVEAK 327 ++GR+V +K Sbjct: 353 --MNGRIVGSK 361 Score = 33.1 bits (74), Expect = 0.41 Identities = 25/125 (20%), Positives = 50/125 (40%) Frame = +1 Query: 109 GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTM 288 G +F+ + D L D F FG + ++ D N ++G+ F+ F A++ Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAI- 155 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 ++G ++ +K +S K + +G+ T +++ V + Sbjct: 156 --EKMNGMLLNDRKVFVGRFKS--RKEREAELGAKAKEFT-NVYIKNFGEEVDDESLKEL 210 Query: 469 FEQFG 483 F QFG Sbjct: 211 FSQFG 215
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 46.6 bits (109), Expect = 4e-05 Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 7/88 (7%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAER-- 279 +G+LF+ I ++ E+ + F +GE+ E + D TG+++GF +++F + A Sbjct: 300 TGRLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAY 359 Query: 280 VTMDKHMIDGRMV-----EAKKAVPRDD 348 + +DK + GR++ +AKK D+ Sbjct: 360 IELDKQIFQGRLLHILPADAKKTHRLDE 387 Score = 30.4 bits (67), Expect = 2.7 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT 285 SGK+ V + +E + + F FG++ ++V + + ARGF F+ F AE Sbjct: 711 SGKIIVKNLPFEATRKDVFELFSSFGQL-KSVRVPKKFDKSARGFAFVEFLLPSEAEN-A 768 Query: 286 MDK----HMIDGRMVEAKKAVPRDD 348 MD+ H++ R+V DD Sbjct: 769 MDQLQGVHLLGRRLVMQYAEQESDD 793
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 46.6 bits (109), Expect = 4e-05 Identities = 24/64 (37%), Positives = 31/64 (48%) Frame = +1 Query: 88 DAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAG 267 D +D V + E +ED LRD FG+ G V I RD+ TG +GF F+ F Sbjct: 169 DRNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRD 228 Query: 268 VAER 279 A R Sbjct: 229 DAAR 232
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 46.6 bits (109), Expect = 4e-05 Identities = 18/49 (36%), Positives = 35/49 (71%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAE 261 +F+G + ++ DE L+ YF +FGE+ + I++D+ T +++G+ FIVF + Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKD 157 Score = 28.9 bits (63), Expect = 7.8 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +1 Query: 409 RKIFVGGLASNVTEVEFXRYFEQFGMI 489 R IF+G L ++ E+E +YF +FG I Sbjct: 107 RTIFIGRLPYDLDEIELQKYFVKFGEI 133
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 46.6 bits (109), Expect = 4e-05 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF----AEAGVAERV 282 ++V + E ED LR FG+FG ++ AV+MRD+ +G +R FGF+ F A A E++ Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKM 289 Query: 283 TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFX 462 D V + ++ + K I + +++ L +V + + Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349 Query: 463 RYFEQFGMIT 492 F ++G +T Sbjct: 350 EMFSEYGNVT 359 Score = 43.1 bits (100), Expect = 4e-04 Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 2/104 (1%) Frame = +1 Query: 97 EADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 ++ L++ + D+++L++ F +G VT + +M + G +RGFGF+ ++ A Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEAL 386 Query: 277 RV--TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPV 402 R M+ MI + + A ++D+ + S I +PGP+ Sbjct: 387 RALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAPGPM 430 Score = 43.1 bits (100), Expect = 4e-04 Identities = 32/128 (25%), Positives = 59/128 (46%) Frame = +1 Query: 109 GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTM 288 G +F+ + D L + F FG + + D TGR++G+GF+ F E + + + Sbjct: 136 GNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQF-EKEESAQAAI 193 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 DK ++G ++ K+ I + +P P R ++V L + E E + Sbjct: 194 DK--LNGMLMNDKQVFV--GHFIRRQERARDENTPTP-RFTNVYVKNLPKEIGEDELRKT 248 Query: 469 FEQFGMIT 492 F +FG+I+ Sbjct: 249 FGKFGVIS 256
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 46.6 bits (109), Expect = 4e-05 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV 282 D+ LFVG ++ D++ LR+ F F +M D TG +RG+GF+ F A+ Sbjct: 159 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNA 218 Query: 283 --TMDKHMIDGRMVEAKKAVPRDDQS 354 +M ++GR + A RD+ + Sbjct: 219 MDSMQGQDLNGRPLRINWAAKRDNNN 244 Score = 31.6 bits (70), Expect = 1.2 Identities = 29/128 (22%), Positives = 49/128 (38%) Frame = +1 Query: 97 EADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 E L+VG + ED L+ YF G + IM D+N F E + Sbjct: 70 ETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVN----YAFVEYHQSH 125 Query: 277 RVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVE 456 + ++G+ +E + + + + S+ + S T +FVG L NV + Sbjct: 126 DANIALQTLNGKQIE--NNIVKINWAFQSQQSSSD-------DTFNLFVGDLNVNVDDET 176 Query: 457 FXRYFEQF 480 F+ F Sbjct: 177 LRNAFKDF 184
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 46.6 bits (109), Expect = 4e-05 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 L V +++ T D LR F ++G V + I RDR T +RGF F+ F + AE M Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75 Query: 289 DKHMIDGRMVEAKKA 333 D ++DGR + + A Sbjct: 76 DGAVLDGRELRVQMA 90
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 46.2 bits (108), Expect = 5e-05 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 8/145 (5%) Frame = +1 Query: 79 GGEDAMEADSG------KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGF 240 G ED M D L V + ++ LR F GEV A ++RD+ G + G+ Sbjct: 4 GYEDHMAEDCRGDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGY 63 Query: 241 GFIVFAEAGVAERV--TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRK 414 GF+ + A AER T++ + + ++ A P S ++ Sbjct: 64 GFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARP----------------SSEVIKDAN 107 Query: 415 IFVGGLASNVTEVEFXRYFEQFGMI 489 +++ GL +T+ + F +FG I Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRI 132 Score = 42.7 bits (99), Expect = 5e-04 Identities = 18/45 (40%), Positives = 27/45 (60%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFI 249 +F+ + + DE L FG FG VT ++RD NT + +GFGF+ Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 290 Score = 37.7 bits (86), Expect = 0.017 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 L++ G+ + + D F RFG + + ++ D+ TG +RG FI F + AE Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAE 161
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 46.2 bits (108), Expect = 5e-05 Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Frame = +1 Query: 109 GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV-- 282 G +++G I E +LR+YF +FG VT + R + TG ++G+ ++ F VA+ V Sbjct: 41 GVIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVAD 100 Query: 283 TMDKHMIDGRMVEAKKAVP 339 TM+ ++ R+++ + P Sbjct: 101 TMNNYLFCERLLKCEFVPP 119
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 45.8 bits (107), Expect = 6e-05 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Frame = +1 Query: 109 GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV-- 282 G L+VG + E +L+ YF +FG+V + R + TG ++G+GF+ F VA+ V Sbjct: 45 GVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAE 104 Query: 283 TMDKHMIDGRMVEAKKAVP 339 TM+ +++ R+++ P Sbjct: 105 TMNNYLMGERIIKCHVIPP 123
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 45.8 bits (107), Expect = 6e-05 Identities = 26/71 (36%), Positives = 39/71 (54%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 L+V + D+DRLR F +G +T A +M D GR++GFGF+ F A T Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCF---NAASEATCAV 344 Query: 295 HMIDGRMVEAK 327 ++GR+V +K Sbjct: 345 TELNGRVVGSK 355 Score = 40.8 bits (94), Expect = 0.002 Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 12/138 (8%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTM-- 288 ++V + + D+++L+++F +G++T +M + G+++GFGF+ F AE Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243 Query: 289 -DKHMIDGRMV---------EAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLAS 438 K M +G+ + E ++ + R + + K + S G ++V L Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGV-------NLYVKNLDD 296 Query: 439 NVTEVEFXRYFEQFGMIT 492 + + F +G IT Sbjct: 297 TIDDDRLRIAFSPYGNIT 314
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 45.8 bits (107), Expect = 6e-05 Identities = 28/130 (21%), Positives = 62/130 (47%), Gaps = 4/130 (3%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT--M 288 +++ + D++RL+++FG++G +M D + G++RGFGF+ F A++ M Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDM 251 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTR--KIFVGGLASNVTEVEFX 462 + ++G+ + +A + ++ K + R + ++V L + + Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 463 RYFEQFGMIT 492 + F FG IT Sbjct: 312 KEFTPFGSIT 321 Score = 42.7 bits (99), Expect = 5e-04 Identities = 24/71 (33%), Positives = 40/71 (56%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 L+V + D++RLR F FG +T A +M + GR++GFGF+ F+ A + + Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTE- 352 Query: 295 HMIDGRMVEAK 327 ++GR+V K Sbjct: 353 --MNGRIVATK 361 Score = 37.4 bits (85), Expect = 0.022 Identities = 28/125 (22%), Positives = 56/125 (44%) Frame = +1 Query: 109 GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTM 288 G +F+ + D L D F FG + ++ D N ++G+GF+ F AER + Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAER-AI 155 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 DK ++G ++ +K +S K + +G+ T +++ ++ + + Sbjct: 156 DK--MNGMLLNDRKVFVGRFKS--RKEREAELGARAKEFT-NVYIKNFGEDMDDERLKEW 210 Query: 469 FEQFG 483 F Q+G Sbjct: 211 FGQYG 215
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 45.8 bits (107), Expect = 6e-05 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 11/137 (8%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FV I + D+++L++ F +G ++RD + G+++GFGF+ + A++ +D Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDL 259 Query: 295 H--MIDGRM---------VEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASN 441 H IDG++ +E + R + + K G P I++ L Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-------IYIKNLDET 312 Query: 442 VTEVEFXRYFEQFGMIT 492 + + + F FG I+ Sbjct: 313 INDEKLKEEFSSFGSIS 329 Score = 30.0 bits (66), Expect = 3.5 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 L+VG + + ED L F G + I RD T G+G++ F AE TM Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 + +I+G+ + P D + S +G+ IF+ L ++ Sbjct: 80 NFDLINGKPFRLMWSQPDD------RLRKSGVGN--------IFIKNLDKSIDNRALFYL 125 Query: 469 FEQFGMI 489 F FG I Sbjct: 126 FSAFGNI 132
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 45.8 bits (107), Expect = 6e-05 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 11/137 (8%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FV I + D+++L++ F +G ++RD + G+++GFGF+ + A++ +D Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDL 259 Query: 295 H--MIDGRM---------VEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASN 441 H IDG++ +E + R + + K G P I++ L Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-------IYIKNLDET 312 Query: 442 VTEVEFXRYFEQFGMIT 492 + + + F FG I+ Sbjct: 313 INDEKLKEEFSSFGSIS 329 Score = 30.0 bits (66), Expect = 3.5 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 L+VG + + ED L F G + I RD T G+G++ F AE TM Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 + +I+G+ + P D + S +G+ IF+ L ++ Sbjct: 80 NFDLINGKPFRLMWSQPDD------RLRKSGVGN--------IFIKNLDKSIDNRALFYL 125 Query: 469 FEQFGMI 489 F FG I Sbjct: 126 FSAFGNI 132
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 45.8 bits (107), Expect = 6e-05 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 11/137 (8%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FV I + D+++L++ F +G ++RD + G+++GFGF+ + A++ +D Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDL 259 Query: 295 H--MIDGRM---------VEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASN 441 H IDG++ +E + R + + K G P I++ L Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-------IYIKNLDET 312 Query: 442 VTEVEFXRYFEQFGMIT 492 + + + F FG I+ Sbjct: 313 INDEKLKEEFSSFGSIS 329 Score = 30.0 bits (66), Expect = 3.5 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 L+VG + + ED L F G + I RD T G+G++ F AE TM Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 + +I+G+ + P D + S +G+ IF+ L ++ Sbjct: 80 NFDLINGKPFRLMWSQPDD------RLRKSGVGN--------IFIKNLDKSIDNRALFYL 125 Query: 469 FEQFGMI 489 F FG I Sbjct: 126 FSAFGNI 132
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 45.8 bits (107), Expect = 6e-05 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 11/137 (8%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FV I + D+++L++ F +G ++RD + G+++GFGF+ + A++ +D Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDL 259 Query: 295 H--MIDGRM---------VEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASN 441 H IDG++ +E + R + + K G P I++ L Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-------IYIKNLDET 312 Query: 442 VTEVEFXRYFEQFGMIT 492 + + + F FG I+ Sbjct: 313 INDEKLKEEFSSFGSIS 329 Score = 30.0 bits (66), Expect = 3.5 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 L+VG + + ED L F G + I RD T G+G++ F AE TM Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 + +I+G+ + P D + S +G+ IF+ L ++ Sbjct: 80 NFDLINGKPFRLMWSQPDD------RLRKSGVGN--------IFIKNLDKSIDNRALFYL 125 Query: 469 FEQFGMI 489 F FG I Sbjct: 126 FSAFGNI 132
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 45.8 bits (107), Expect = 6e-05 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 11/137 (8%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FV I + D+++L++ F +G ++RD + G+++GFGF+ + A++ +D Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDL 259 Query: 295 H--MIDGRM---------VEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASN 441 H IDG++ +E + R + + K G P I++ L Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-------IYIKNLDET 312 Query: 442 VTEVEFXRYFEQFGMIT 492 + + + F FG I+ Sbjct: 313 INDEKLKEEFSSFGSIS 329 Score = 30.0 bits (66), Expect = 3.5 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 L+VG + + ED L F G + I RD T G+G++ F AE TM Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 + +I+G+ + P D + S +G+ IF+ L ++ Sbjct: 80 NFDLINGKPFRLMWSQPDD------RLRKSGVGN--------IFIKNLDKSIDNRALFYL 125 Query: 469 FEQFGMI 489 F FG I Sbjct: 126 FSAFGNI 132
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 45.8 bits (107), Expect = 6e-05 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 11/137 (8%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FV I + D+++L++ F +G ++RD + G+++GFGF+ + A++ +D Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDL 259 Query: 295 H--MIDGRM---------VEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASN 441 H IDG++ +E + R + + K G P I++ L Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-------IYIKNLDET 312 Query: 442 VTEVEFXRYFEQFGMIT 492 + + + F FG I+ Sbjct: 313 INDEKLKEEFSSFGSIS 329 Score = 30.0 bits (66), Expect = 3.5 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 L+VG + + ED L F G + I RD T G+G++ F AE TM Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 + +I+G+ + P D + S +G+ IF+ L ++ Sbjct: 80 NFDLINGKPFRLMWSQPDD------RLRKSGVGN--------IFIKNLDKSIDNRALFYL 125 Query: 469 FEQFGMI 489 F FG I Sbjct: 126 FSAFGNI 132
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 45.8 bits (107), Expect = 6e-05 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 6/119 (5%) Frame = +1 Query: 73 RRGGEDAMEADS----GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGF 240 R GG D A L + +S++T + LR F R+G++ + I RD+ + +++GF Sbjct: 3 RGGGGDRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGF 62 Query: 241 GFIVFAEAGVAERV--TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTR 411 GF+ F E AE D ++DGR E + + + D+ S G G G R+R Sbjct: 63 GFVRFYERRDAEHALDRTDGKLVDGR--ELRVTLAKYDR--PSDERGGRGGGGGRRRSR 117
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 45.4 bits (106), Expect = 8e-05 Identities = 21/64 (32%), Positives = 38/64 (59%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV 282 DS +LF+G + E D+ L+D+F +G V E +R + G+ FGF+VF ++ ++V Sbjct: 338 DSHQLFIGNLPHEVDKSELKDFFQSYGNVVE---LRINSGGKLPNFGFVVFDDSEPVQKV 394 Query: 283 TMDK 294 ++ Sbjct: 395 LSNR 398
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 45.1 bits (105), Expect = 1e-04 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 3/82 (3%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAV-IMRDRNTGRARGFGFIVFA--EAGVAERVT 285 +FVG + E DE L D F FG + + IMRD ++G ++GF FI FA EA Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161 Query: 286 MDKHMIDGRMVEAKKAVPRDDQ 351 M+ + R + A RD + Sbjct: 162 MNGQFLCNRAITVSYAFKRDSK 183 Score = 38.5 bits (88), Expect = 0.010 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 2/127 (1%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 ++VGG+ + E L + + G V + +DR T +GFGF+ F A+ Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74 Query: 295 HMID--GRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 +MI G+ ++ KA ++ +G+ IFVG L V E Sbjct: 75 NMIKLYGKPIKVNKA--------SAHEKNMDVGA-------NIFVGNLDPEVDEKLLYDT 119 Query: 469 FEQFGMI 489 F FG+I Sbjct: 120 FSAFGVI 126
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 45.1 bits (105), Expect = 1e-04 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 ++FVGGIS +T E L F +G V I+ DR G ++G+GF+ F A+R+ D Sbjct: 34 RIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQRLQAD 92 Query: 292 KHMIDGR-----MVEAKKAVPRDDQSIASKN 369 + R + A K P QSI + N Sbjct: 93 GECVVLRDRKLNIAPAIKKQPNPLQSIVATN 123 Score = 30.0 bits (66), Expect = 3.5 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +1 Query: 394 GPVRTRKIFVGGLASNVTEVEFXRYFEQFGMI 489 G + +IFVGG++ + TE + R F +G + Sbjct: 28 GTLIPNRIFVGGISGDTTEADLTRVFSAYGTV 59
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 45.1 bits (105), Expect = 1e-04 Identities = 38/140 (27%), Positives = 64/140 (45%) Frame = +1 Query: 70 GRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFI 249 G R G D+++ IS T E LR+ F FG++ + ++RD++T ++G F+ Sbjct: 12 GFRPGVDSLDEPPNSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFV 71 Query: 250 VFAEAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGG 429 FA + A R + H G+ + P S+++GS TR IFV Sbjct: 72 KFARSSQACRAMEEMH---GQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTR-IFV-M 126 Query: 430 LASNVTEVEFXRYFEQFGMI 489 + + TE + F+ +G I Sbjct: 127 IPKSYTEEDLREKFKVYGDI 146
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 44.7 bits (104), Expect = 1e-04 Identities = 24/65 (36%), Positives = 37/65 (56%) Frame = +1 Query: 61 ADRGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGF 240 ++R R G A + L V G+S T E LR+ F R+G ++ ++ D+ TGR+RGF Sbjct: 101 SNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGF 160 Query: 241 GFIVF 255 F+ F Sbjct: 161 AFVYF 165
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 2/91 (2%) Frame = +1 Query: 61 ADRGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGF 240 A+ + + +E SG ++V + E L YF +FG++ E + R++ TG +R + Sbjct: 75 ANEKKSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHY 134 Query: 241 GFIVFA--EAGVAERVTMDKHMIDGRMVEAK 327 GF+ F E + + +M+ +++ G +++ + Sbjct: 135 GFLEFVNKEDAMIAQESMNNYLLMGHLLQVR 165
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 44.7 bits (104), Expect = 1e-04 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF--AEAGVAERVTM 288 L+VGG++ E D+ L F FG++T+ I D T + RGF F+ F AE A M Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 289 DKHMIDGRMVEAKKAVP 339 ++ + GR + A P Sbjct: 68 NESELFGRTIRVNLAKP 84
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 44.7 bits (104), Expect = 1e-04 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF--AEAGVAERVTM 288 L+VGG++ E D+ L F FG++T+ I D T + RGF F+ F AE A M Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 289 DKHMIDGRMVEAKKAVP 339 ++ + GR + A P Sbjct: 68 NESELFGRTIRVNLAKP 84
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 44.7 bits (104), Expect = 1e-04 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 LFV ++ +T + LR FGR+G + + + D T R RGF ++ F + AE + Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71 Query: 289 DKHMIDGRMVEAKKA 333 D+ I GR +E + A Sbjct: 72 DRKWICGRQIEIQFA 86
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 44.7 bits (104), Expect = 1e-04 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 LFV ++ +T + LR FGR+G + + + D T R RGF ++ F + AE + Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71 Query: 289 DKHMIDGRMVEAKKA 333 D+ I GR +E + A Sbjct: 72 DRKWICGRQIEIQFA 86
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 44.7 bits (104), Expect = 1e-04 Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 17/148 (11%) Frame = +1 Query: 97 EADSGKLFVGGISWETDEDRLRDYFG-RFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVA 273 +A +FVG +S +E + F R+ A IM D T +RG+GF+ F + Sbjct: 182 KASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQ 241 Query: 274 ERVT--MDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSP--------------GPVR 405 + M + R + A P+ + S N + P Sbjct: 242 KSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTA 301 Query: 406 TRKIFVGGLASNVTEVEFXRYFEQFGMI 489 +FVGGL+ V+E E F+ FG I Sbjct: 302 NSTVFVGGLSKFVSEEELKYLFQNFGEI 329 Score = 29.3 bits (64), Expect = 6.0 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAE 276 +FVGG+S E+ L+ F FGE+ I +G GF+ F AE Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKI------PPGKGCGFVQFVNRQSAE 352
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 44.7 bits (104), Expect = 1e-04 Identities = 24/65 (36%), Positives = 37/65 (56%) Frame = +1 Query: 61 ADRGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGF 240 ++R R G A + L V G+S T E LR+ F R+G ++ ++ D+ TGR+RGF Sbjct: 103 SNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGF 162 Query: 241 GFIVF 255 F+ F Sbjct: 163 AFVYF 167
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Frame = +1 Query: 109 GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV-- 282 G +++G I E +L++YF +FG VT + R + TG ++G+ ++ + VA+ V Sbjct: 41 GVIYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIVAD 100 Query: 283 TMDKHMIDGRMVEAKKAVP 339 TM+ ++ R+++ + P Sbjct: 101 TMNNYLFCERLLKCEFVTP 119
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 44.7 bits (104), Expect = 1e-04 Identities = 21/52 (40%), Positives = 32/52 (61%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA 258 D LFV I + +++L D+F F + AV+++D N R+RGFGF+ FA Sbjct: 24 DMKTLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFA 74 Score = 40.4 bits (93), Expect = 0.003 Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 22/125 (17%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAE----------- 261 +FV + ++ E+ L +F +FG V A+ + D++TG A+G F+ F + Sbjct: 292 VFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQYTYNECIKNA 351 Query: 262 --AGVAERV----TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGS----SIG-SPGPVRT 408 AG + M +++ +GR++ + R+D ++ N + ++G +PG Sbjct: 352 PAAGSTSLLIGDDVMPEYVYEGRVLSITPTLVREDAGRMAEKNAAKRKEALGKAPGEKDR 411 Query: 409 RKIFV 423 R +++ Sbjct: 412 RNLYL 416
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 44.3 bits (103), Expect = 2e-04 Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF---AEAGVAERV 282 +L + +S++ ED L+ F +FG V E I R + G+ RGFGF+ F EAG A + Sbjct: 114 RLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKMRGFGFVQFKNLLEAGKALK- 171 Query: 283 TMDKHMIDGRMVEAKKAVPRD 345 M+ I GR V AV +D Sbjct: 172 GMNMKEIKGRTVAVDWAVAKD 192 Score = 40.4 bits (93), Expect = 0.003 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 11/136 (8%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 LFVG + ++L + F + G V + ++ ++ + RGFG++ F+ +R + Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 295 HMIDG---RMVEAKKAVPRDDQSIASKNNGSSIGSPGPV--------RTRKIFVGGLASN 441 +G + AKK + R+ KN S P + ++ + L+ Sbjct: 65 TTFEGCKINVTVAKKKL-RNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFK 123 Query: 442 VTEVEFXRYFEQFGMI 489 +E + F QFG + Sbjct: 124 CSEDDLKTVFAQFGAV 139
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 44.3 bits (103), Expect = 2e-04 Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 1/99 (1%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEA-GVAER 279 D +FVG + + DE L ++F G + I+R+ TG RGFG+++F V Sbjct: 283 DKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 342 Query: 280 VTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPG 396 + ++ + GR + ++V + + + +N+ S+ G Sbjct: 343 LKLNNSELMGRKLRVMRSV--NKEKLKQQNSNPSVKKDG 379
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/74 (31%), Positives = 40/74 (54%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FVGGI DE + FGR+G V E I+ +R TG ++G+GF+ F +++ + Sbjct: 372 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ 430 Query: 295 HMIDGRMVEAKKAV 336 G+ ++ A+ Sbjct: 431 IHFHGKKLKLGPAI 444 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/74 (31%), Positives = 40/74 (54%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FVGGI DE + FGR+G V E I+ +R TG ++G+GF+ F +++ + Sbjct: 207 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ 265 Query: 295 HMIDGRMVEAKKAV 336 G+ ++ A+ Sbjct: 266 IHFHGKKLKLGPAI 279 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/74 (31%), Positives = 40/74 (54%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FVGGI DE + FGR+G V E I+ +R TG ++G+GF+ F +++ + Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ 100 Query: 295 HMIDGRMVEAKKAV 336 G+ ++ A+ Sbjct: 101 IHFHGKKLKLGPAI 114
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = +1 Query: 109 GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV-- 282 G ++V + DE ++ YF +FG VT + R + TG ++G+ F+ F VA+ V Sbjct: 45 GVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAE 104 Query: 283 TMDKHMIDGRMVE 321 TM+ ++ R++E Sbjct: 105 TMNNYLFGERLLE 117
>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 563 Score = 44.3 bits (103), Expect = 2e-04 Identities = 34/125 (27%), Positives = 52/125 (41%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 LF+G + E LR F ++G + E VI R G+ + F+ F +A R K Sbjct: 12 LFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPAR-GQGGAYAFLKFQNLDMAHRA---K 67 Query: 295 HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRYFE 474 + GR++ N IG T +++VGGL N + R F+ Sbjct: 68 VAMSGRVIG---------------RNPIKIGYGKANPTTRLWVGGLGPNTSLAALAREFD 112 Query: 475 QFGMI 489 +FG I Sbjct: 113 RFGSI 117 Score = 33.9 bits (76), Expect = 0.24 Identities = 14/28 (50%), Positives = 21/28 (75%) Frame = +1 Query: 406 TRKIFVGGLASNVTEVEFXRYFEQFGMI 489 TR +F+G L +V+EVE R FE++G+I Sbjct: 9 TRNLFIGNLDHSVSEVELRRAFEKYGII 36
>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 564 Score = 44.3 bits (103), Expect = 2e-04 Identities = 34/125 (27%), Positives = 52/125 (41%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 LF+G + E LR F ++G + E VI R G+ + F+ F +A R K Sbjct: 12 LFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPAR-GQGGAYAFLKFQNLDMAHRA---K 67 Query: 295 HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRYFE 474 + GR++ N IG T +++VGGL N + R F+ Sbjct: 68 VAMSGRVIG---------------RNPIKIGYGKANPTTRLWVGGLGPNTSLAALAREFD 112 Query: 475 QFGMI 489 +FG I Sbjct: 113 RFGSI 117 Score = 33.9 bits (76), Expect = 0.24 Identities = 14/28 (50%), Positives = 21/28 (75%) Frame = +1 Query: 406 TRKIFVGGLASNVTEVEFXRYFEQFGMI 489 TR +F+G L +V+EVE R FE++G+I Sbjct: 9 TRNLFIGNLDHSVSEVELRRAFEKYGII 36
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/74 (31%), Positives = 40/74 (54%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FVGGI DE + FGR+G V E I+ +R TG ++G+GF+ F +++ + Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ 100 Query: 295 HMIDGRMVEAKKAV 336 G+ ++ A+ Sbjct: 101 IHFHGKKLKLGPAI 114
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 44.3 bits (103), Expect = 2e-04 Identities = 17/53 (32%), Positives = 34/53 (64%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAE 261 DS +F+GG+ +E E + F ++GE+ ++RD+ TG+++GF F+ + + Sbjct: 34 DSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYED 86
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/74 (31%), Positives = 40/74 (54%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FVGGI DE + FGR+G V E I+ +R TG ++G+GF+ F +++ + Sbjct: 207 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ 265 Query: 295 HMIDGRMVEAKKAV 336 G+ ++ A+ Sbjct: 266 IHFHGKKLKLGPAI 279 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/74 (31%), Positives = 40/74 (54%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FVGGI DE + FGR+G V E I+ +R TG ++G+GF+ F +++ + Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ 100 Query: 295 HMIDGRMVEAKKAV 336 G+ ++ A+ Sbjct: 101 IHFHGKKLKLGPAI 114
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/74 (31%), Positives = 40/74 (54%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 +FVGGI DE + FGR+G V E I+ +R TG ++G+GF+ F +++ + Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ 100 Query: 295 HMIDGRMVEAKKAV 336 G+ ++ A+ Sbjct: 101 IHFHGKKLKLGPAI 114
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 44.3 bits (103), Expect = 2e-04 Identities = 38/140 (27%), Positives = 64/140 (45%) Frame = +1 Query: 70 GRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFI 249 G R G D+++ IS T E LR+ F FG++ + ++RD++T ++G F+ Sbjct: 12 GFRPGVDSLDEPPNSRIFLVISKHTSELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFV 71 Query: 250 VFAEAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGG 429 FA + A R + H G+ + P S+++GS TR IFV Sbjct: 72 KFARSSQACRAMEEMH---GQCLGPSDTKPIKVFIAQSRSSGSHRDVEDEELTR-IFV-M 126 Query: 430 LASNVTEVEFXRYFEQFGMI 489 + + TE + F+ +G I Sbjct: 127 IPKSYTEEDLREKFKVYGDI 146
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 43.9 bits (102), Expect = 2e-04 Identities = 21/61 (34%), Positives = 36/61 (59%) Frame = +1 Query: 73 RRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIV 252 R GGE + + L+V +S +++L FG++G++ + I+RD++TG RG FI Sbjct: 155 RPGGEQLRDTN---LYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIR 211 Query: 253 F 255 F Sbjct: 212 F 212 Score = 37.0 bits (84), Expect = 0.029 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 L V + + + L F G + IMRD TG + G+GF+ F A R + Sbjct: 80 LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNL 139 Query: 295 HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPG--PVRTRKIFVGGLASNVTEVEFXRY 468 + I ++ +K S PG +R ++V L+ ++T+ + Sbjct: 140 NGI----------------TVRNKRIKVSFARPGGEQLRDTNLYVTNLSRSITDEQLETI 183 Query: 469 FEQFGMI 489 F ++G I Sbjct: 184 FGKYGQI 190
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 43.9 bits (102), Expect = 2e-04 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%) Frame = +1 Query: 67 RGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGF 246 RG R ++++ S L+VG +S+ T E+++ + F + G+V V+ D+ A GF F Sbjct: 18 RGNRSDQESLLKQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCF 77 Query: 247 IVF---AEAGVAERVTMDKHMIDGRMV 318 + + A+AG A R ++ +D R+V Sbjct: 78 VEYYTRADAGTAMRF-INGTRLDDRIV 103
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 43.9 bits (102), Expect = 2e-04 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 4/98 (4%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 LFV ++ T ++ L F RFG++ ++RD+ +G + + FI F E AE+ M Sbjct: 248 LFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAAEQAYFKM 307 Query: 289 DKHMIDGR--MVEAKKAVPRDDQSIASKNNGSSIGSPG 396 ++D R V+ ++V + ++S+ S +N + G G Sbjct: 308 QNVLVDDRRIWVDFSQSVAKMNRSMLSSSNPTGRGGRG 345
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 43.5 bits (101), Expect = 3e-04 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 3/82 (3%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAV-IMRDRNTGRARGFGFIVFA--EAGVAERVT 285 +F+G + E DE L D F FG + + IMRD +TG ++G+ FI FA +A A Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161 Query: 286 MDKHMIDGRMVEAKKAVPRDDQ 351 M+ + R + A +D + Sbjct: 162 MNGQYLCNRPITVSYAFKKDSK 183 Score = 43.5 bits (101), Expect = 3e-04 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 2/127 (1%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 ++VGG+ + E L + F + G V + +DR TG+ +G+GF+ F A+ Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74 Query: 295 HMID--GRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRY 468 +MI G+ + KA ++ N +G+ IF+G L + E Sbjct: 75 NMIKLYGKPIRVNKA--------SAHNKNLDVGA-------NIFIGNLDPEIDEKLLYDT 119 Query: 469 FEQFGMI 489 F FG+I Sbjct: 120 FSAFGVI 126
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 43.5 bits (101), Expect = 3e-04 Identities = 24/94 (25%), Positives = 52/94 (55%), Gaps = 7/94 (7%) Frame = +1 Query: 100 ADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAER 279 +++ +LF+ +++ ED L+ FG FG++ + + D+ T +GF +I F +A A R Sbjct: 320 SETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVR 379 Query: 280 --VTMDKHMIDGRMV-----EAKKAVPRDDQSIA 360 + +D GR++ +A+ ++ DD +++ Sbjct: 380 AYLELDAKPFQGRLLHVLPAKARSSILLDDYALS 413
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 43.1 bits (100), Expect = 4e-04 Identities = 35/125 (28%), Positives = 53/125 (42%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 LF+G + E LR F RFG +TE I R + G+ +GF+ F ++ R K Sbjct: 376 LFLGNLDITVTESDLRRAFDRFGVITEVDIKRP-SRGQTSTYGFLKFENLDMSHRA---K 431 Query: 295 HMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEFXRYFE 474 + G+++ N IG T +++VGGL V R F+ Sbjct: 432 LAMSGKII---------------IRNPIKIGYGKATPTTRLWVGGLGPWVPLAALAREFD 476 Query: 475 QFGMI 489 +FG I Sbjct: 477 RFGTI 481 Score = 30.0 bits (66), Expect = 3.5 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +1 Query: 409 RKIFVGGLASNVTEVEFXRYFEQFGMIT 492 R +F+G L VTE + R F++FG+IT Sbjct: 374 RTLFLGNLDITVTESDLRRAFDRFGVIT 401
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 43.1 bits (100), Expect = 4e-04 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%) Frame = +1 Query: 157 LRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA--EAGVAERVTMDKHMIDGRMVEAKK 330 L F +GEV E+ I+ DR T R+RGFGF+ F+ EA + M+ +DGR + + Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNE 62 Query: 331 AVPR 342 A R Sbjct: 63 AQSR 66
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 43.1 bits (100), Expect = 4e-04 Identities = 17/52 (32%), Positives = 33/52 (63%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAE 261 S +FVGG+ +E E + F ++GE+ ++RD+ TG+++GF F+ + + Sbjct: 35 SAWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYED 86
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 42.7 bits (99), Expect = 5e-04 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 4/98 (4%) Frame = +1 Query: 55 TTADRGR-RGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRA 231 T+ DR R R D +A S + V G++ T + ++R+ F +FG + ++ D +T R+ Sbjct: 87 TSRDRQRMRQARDHPQA-SRCIGVFGLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHRS 145 Query: 232 RGFGFIVFAEAGVAERVTMDK---HMIDGRMVEAKKAV 336 RGF FI F G A RV D +DGR + ++ Sbjct: 146 RGFCFIYFENLGDA-RVAKDACTGMEVDGRRIRVDYSI 182
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 42.7 bits (99), Expect = 5e-04 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 +L V I + + LR FG+FG++ + I+ N ++GFGF+ F + A+R Sbjct: 117 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEII--FNERGSKGFGFVTFENSADADRAREK 174 Query: 292 KH--MIDGRMVEAKKAVPR 342 H +++GR +E A R Sbjct: 175 LHGTVVEGRKIEVNNATAR 193
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 42.7 bits (99), Expect = 5e-04 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 +L V I + + LR FG+FG++ + I+ N ++GFGF+ F + A+R Sbjct: 118 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEII--FNERGSKGFGFVTFENSADADRAREK 175 Query: 292 KH--MIDGRMVEAKKAVPR 342 H +++GR +E A R Sbjct: 176 LHGTVVEGRKIEVNNATAR 194
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 42.7 bits (99), Expect = 5e-04 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 +L V I + + LR FG+FG++ + I+ N ++GFGF+ F + A+R Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEII--FNERGSKGFGFVTFENSADADRAREK 179 Query: 292 KH--MIDGRMVEAKKAVPR 342 H +++GR +E A R Sbjct: 180 LHGTVVEGRKIEVNNATAR 198
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 42.4 bits (98), Expect = 7e-04 Identities = 21/61 (34%), Positives = 33/61 (54%) Frame = +1 Query: 73 RRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIV 252 R GGE + + L+V + +D L FG++G + + I+RD+ TGR RG F+ Sbjct: 179 RPGGESIKDTN---LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVR 235 Query: 253 F 255 F Sbjct: 236 F 236
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 42.4 bits (98), Expect = 7e-04 Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 50/175 (28%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYF-GRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 +FVG ++ E +L + F R+ + A I+ D+ TG ++G+GF+ F + + + Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224 Query: 292 KH--MIDGRMVEAKKAVPRD---------DQSIASKNN----------GSSIGSPG---- 396 ++GR ++ + ++S +S NN G S S G Sbjct: 225 MQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNM 284 Query: 397 ------------PVRTRK------------IFVGGLASNVTEVEFXRYFEQFGMI 489 PV+ + +F+GGL+S VTE E YF+ FG I Sbjct: 285 GFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTI 339 Score = 32.3 bits (72), Expect = 0.71 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 11/131 (8%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNT-----------GRARGFGFIVFA 258 +L++G + D++ +R + GE V M NT +G+ F+ F Sbjct: 55 QLYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFP 114 Query: 259 EAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLAS 438 + A + M+ K + S ++ NN S+ + IFVG LA Sbjct: 115 SSTHAANALLKNGMLIPNFPNKKLKLNWATSSYSNSNN--SLNNVKSGNNCSIFVGDLAP 172 Query: 439 NVTEVEFXRYF 471 NVTE + F Sbjct: 173 NVTESQLFELF 183 Score = 28.9 bits (63), Expect = 7.8 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIV---FAEAGVA 273 +F+GG+S ED LR YF FG + I G+ GF V AEA +A Sbjct: 315 VFIGGLSSLVTEDELRAYFQPFGTIVYVKI----PVGKCCGFVQYVDRLSAEAAIA 366
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 42.0 bits (97), Expect = 9e-04 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA--EAGVAER 279 S +LFV +S+ET E L F FG++ E + D ++GF ++ +A +A V Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAY 353 Query: 280 VTMDKHMIDGRMV 318 +D + GR++ Sbjct: 354 RNLDGKIFQGRLL 366 Score = 31.2 bits (69), Expect = 1.6 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 5/74 (6%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMR--DRNTGRARGFGFIVFAEAGVAER-- 279 K+ + + ++ + +R FG +G++ + + DR+ ARGFGF F A AE Sbjct: 698 KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS---ARGFGFADFVSAREAENAM 754 Query: 280 -VTMDKHMIDGRMV 318 + H++ R+V Sbjct: 755 DALKNTHLLGRRLV 768
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 42.0 bits (97), Expect = 9e-04 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 LFVG +S++ +D LR +F G++ + + ++G+ +GF FI F + DK Sbjct: 241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDK 300 Query: 295 --HMIDGRMVEAKKAVPRDDQSI------ASKNNGSS 381 I GR + + R + + S+NN SS Sbjct: 301 SCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRNNSSS 337
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF--AEAGVAER 279 +G+LF+ + + E+ R F ++GE+ E + + TG+ +GF + F E +A Sbjct: 300 TGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAY 359 Query: 280 VTMDKHMIDGRMVEAKKAVPRDD 348 D + GR++ P+ D Sbjct: 360 EAQDGKIFQGRLLHILPGKPKKD 382 Score = 35.8 bits (81), Expect = 0.064 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 7/135 (5%) Frame = +1 Query: 106 SGKLFVGGISWETDEDRLRDYFGRF-GEVTEAVIMR--DRNTGR--ARGFGFIVFAEAGV 270 S +FV ++++T L D F G + V M+ +N G+ + GFGF+ F+ Sbjct: 604 STSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEA 663 Query: 271 AE--RVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNV 444 AE + MD H++DG ++ K I+++ KI + L Sbjct: 664 AEIAQKAMDGHVLDGHKLQLK---------ISNRGQDEETTETKKAIDSKILIKNLPFEA 714 Query: 445 TEVEFXRYFEQFGMI 489 T+ + + F FG + Sbjct: 715 TKKDVQKLFGAFGSL 729
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 41.6 bits (96), Expect = 0.001 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 13/117 (11%) Frame = +1 Query: 85 EDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA-- 258 E M A ++V ++ E+ LR +F + G +T +M D G+++GFGF+ F+ Sbjct: 296 EQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTP 354 Query: 259 EAGVAERVTMDKHMIDGRMVEAKKAVPRDDQSI-----------ASKNNGSSIGSPG 396 E + T M G+ + A ++D+ + A K++ S+ +PG Sbjct: 355 EEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPG 411 Score = 39.7 bits (91), Expect = 0.004 Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 2/145 (1%) Frame = +1 Query: 61 ADRGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGF 240 AD G + A L+VG + E L D F F +T + +D ++GR+ + Sbjct: 11 ADASSSGSSSPVTAS---LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCY 67 Query: 241 GFIVFAEAGVAERVTMDKH--MIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRK 414 G+ F A K+ +++G+M+ +V D ++ NG +G+ Sbjct: 68 GYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPD----ARRNG--VGN-------- 113 Query: 415 IFVGGLASNVTEVEFXRYFEQFGMI 489 +FV L +VT F++FG I Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNI 138 Score = 38.9 bits (89), Expect = 0.008 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 5/131 (3%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 L++ + + ED LR+ F FG++ I +D N RG+ F+ F A R T+ Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETV 261 Query: 289 DKHMIDGRMV---EAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEF 459 + + + A+K R +Q + + + I+V + VTE E Sbjct: 262 NGTKFGSKCLYVGRAQKKAER-EQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEEL 320 Query: 460 XRYFEQFGMIT 492 ++F Q G IT Sbjct: 321 RKHFSQCGTIT 331 Score = 33.9 bits (76), Expect = 0.24 Identities = 27/136 (19%), Positives = 57/136 (41%), Gaps = 2/136 (1%) Frame = +1 Query: 88 DAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAG 267 DA G +FV + L+D F +FG + + + G++RG+GF+ F + Sbjct: 105 DARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQFEQED 163 Query: 268 VAERV--TMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASN 441 A T++ ++ + + K + + D+ + + +++ L ++ Sbjct: 164 AAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEE------------KYTNLYMKNLDAD 211 Query: 442 VTEVEFXRYFEQFGMI 489 V+E F +FG I Sbjct: 212 VSEDLLREKFAEFGKI 227
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEA-GVAER 279 D +FVG + ++ +E + +F G + I+RD+ TG +GFG+++F V Sbjct: 285 DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLA 344 Query: 280 VTMDKHMIDGRMVEAKKAVPRD 345 + ++ + GR + ++V ++ Sbjct: 345 LKLNNSELMGRKLRVMRSVNKE 366
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 41.6 bits (96), Expect = 0.001 Identities = 24/71 (33%), Positives = 40/71 (56%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 L+V + D++RLR F FG +T A +M + GR++GFGF+ F+ A + + Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE- 352 Query: 295 HMIDGRMVEAK 327 ++GR+V K Sbjct: 353 --MNGRIVATK 361 Score = 41.6 bits (96), Expect = 0.001 Identities = 27/130 (20%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT--M 288 +++ + +++RL++ FG++G +M D N G+++GFGF+ F A++ M Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEM 251 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTR--KIFVGGLASNVTEVEFX 462 + ++G+ + +A + ++ K + R + ++V L + + Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 463 RYFEQFGMIT 492 + F FG IT Sbjct: 312 KEFLPFGTIT 321 Score = 35.0 bits (79), Expect = 0.11 Identities = 21/74 (28%), Positives = 37/74 (50%) Frame = +1 Query: 109 GKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTM 288 G +F+ + D L D F FG + ++ D N ++G+GF+ F AER + Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAER-AI 155 Query: 289 DKHMIDGRMVEAKK 330 DK ++G ++ +K Sbjct: 156 DK--MNGMLLNDRK 167
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Frame = +1 Query: 88 DAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAG 267 D D+ ++VG + + + L+ +F G V I+ D+ TG +GF +I F+E Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPS 107 Query: 268 VAERVTMDKHMIDGRMVEAK--KAVPR 342 + +++G M+ + K P+ Sbjct: 108 LVPNAL----LLNGSMLHERPLKVTPK 130
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 41.2 bits (95), Expect = 0.002 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAE 261 +FVG + +E DE+ L +FG G + I+RD T +GF ++ F E Sbjct: 230 VFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNE 278
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/61 (32%), Positives = 33/61 (54%) Frame = +1 Query: 73 RRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIV 252 R GGE + + L+V + +D L FG++G + + I+RD+ TG+ RG F+ Sbjct: 162 RPGGESIKDTN---LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVR 218 Query: 253 F 255 F Sbjct: 219 F 219
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/59 (33%), Positives = 33/59 (55%) Frame = +1 Query: 73 RRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFI 249 R GGE + + L+V + +D+L FG++G + + I+RD+ TGR RG F+ Sbjct: 204 RPGGESIKDTN---LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFV 259
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/59 (33%), Positives = 33/59 (55%) Frame = +1 Query: 73 RRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFI 249 R GGE + + L+V + +D+L FG++G + + I+RD+ TGR RG F+ Sbjct: 202 RPGGESIKDTN---LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFV 257
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 40.8 bits (94), Expect = 0.002 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 LF+ ++ T + LR FGR+G + + I D T R RGF ++ F + AE + Sbjct: 12 LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71 Query: 289 DKHMIDGRMVEAKKA 333 ++ + GR +E + A Sbjct: 72 NRKWVCGRQIEIQFA 86
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 40.8 bits (94), Expect = 0.002 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 6/137 (4%) Frame = +1 Query: 97 EADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFA-EAGVA 273 E D +FV ++ L D+F + G V +A I+RD+ +GR++G ++ F E V Sbjct: 236 ERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQ 295 Query: 274 ERVTMDKHMIDG-----RMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLAS 438 + + + G ++ EA+K R + A +S P ++ V + Sbjct: 296 AAIALSGKRLLGLPVIVQLTEAEK--NRKAREAAELARAASAEIP----FHRLCVSNIHF 349 Query: 439 NVTEVEFXRYFEQFGMI 489 N+T+ + FE FG I Sbjct: 350 NLTDEDVKAIFEPFGDI 366
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 40.8 bits (94), Expect = 0.002 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Frame = +1 Query: 67 RGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGF 246 R R G A + L V G+S T E LR+ F ++G + + I+ D+ + R+RGF F Sbjct: 104 RRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAF 163 Query: 247 IVFAEAGVAE--RVTMDKHMIDGRMVEAKKAVPR 342 + F A+ + + +DGR + ++ + Sbjct: 164 VYFENVDDAKEAKERANGMELDGRRIRVDFSITK 197
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 40.8 bits (94), Expect = 0.002 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Frame = +1 Query: 67 RGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGF 246 R R G A + L V G+S T E LR+ F ++G + + I+ D+ + R+RGF F Sbjct: 104 RRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAF 163 Query: 247 IVFAEAGVAE--RVTMDKHMIDGRMVEAKKAVPR 342 + F A+ + + +DGR + ++ + Sbjct: 164 VYFENVDDAKEAKERANGMELDGRRIRVDFSITK 197
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 40.8 bits (94), Expect = 0.002 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Frame = +1 Query: 67 RGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGF 246 R R G A + L V G+S T E LR+ F ++G + + I+ D+ + R+RGF F Sbjct: 104 RRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAF 163 Query: 247 IVFAEAGVAE--RVTMDKHMIDGRMVEAKKAVPR 342 + F A+ + + +DGR + ++ + Sbjct: 164 VYFENVDDAKEAKERANGMELDGRRIRVDFSITK 197
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 40.4 bits (93), Expect = 0.003 Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 18/148 (12%) Frame = +1 Query: 94 MEADSGKLFVGGISWETDEDRLRDYFG---RFGEVTEAV--------IMRDRNTGRARGF 240 M + +L+VG I + E+ + D+F R G +T+A I +D+N F Sbjct: 144 MTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKN------F 197 Query: 241 GFIVFAEAG-VAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRT--- 408 F+ F + + D + G+ ++ ++ P D Q + + S+ PG V T Sbjct: 198 AFLEFRSVDETTQAMAFDGIIFQGQSLKIRR--PHDYQPLPGMSENPSVYVPGVVSTVVP 255 Query: 409 ---RKIFVGGLASNVTEVEFXRYFEQFG 483 K+F+GGL + + + + FG Sbjct: 256 DSAHKLFIGGLPNYLNDDQVKELLTSFG 283 Score = 37.0 bits (84), Expect = 0.029 Identities = 20/86 (23%), Positives = 46/86 (53%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 KLF+GG+ ++D++++ FG + +++D TG ++G+ F + + V ++ Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 319 Query: 292 KHMIDGRMVEAKKAVPRDDQSIASKN 369 ++G + KK + + S+ +KN Sbjct: 320 ---LNGMQLGDKKLLVQ-RASVGAKN 341
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 40.4 bits (93), Expect = 0.003 Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 18/148 (12%) Frame = +1 Query: 94 MEADSGKLFVGGISWETDEDRLRDYFG---RFGEVTEAV--------IMRDRNTGRARGF 240 M + +L+VG I + E+ + D+F R G +T+A I +D+N F Sbjct: 144 MTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKN------F 197 Query: 241 GFIVFAEAG-VAERVTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRT--- 408 F+ F + + D + G+ ++ ++ P D Q + + S+ PG V T Sbjct: 198 AFLEFRSVDETTQAMAFDGIIFQGQSLKIRR--PHDYQPLPGMSENPSVYVPGVVSTVVP 255 Query: 409 ---RKIFVGGLASNVTEVEFXRYFEQFG 483 K+F+GGL + + + + FG Sbjct: 256 DSAHKLFIGGLPNYLNDDQVKELLTSFG 283 Score = 37.0 bits (84), Expect = 0.029 Identities = 20/86 (23%), Positives = 46/86 (53%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMD 291 KLF+GG+ ++D++++ FG + +++D TG ++G+ F + + V ++ Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 319 Query: 292 KHMIDGRMVEAKKAVPRDDQSIASKN 369 ++G + KK + + S+ +KN Sbjct: 320 ---LNGMQLGDKKLLVQ-RASVGAKN 341
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 40.4 bits (93), Expect = 0.003 Identities = 19/57 (33%), Positives = 34/57 (59%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV 282 ++FVGG T E LR++F +F V + +++ + G+++G+GFI F AE + Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLD-GQSKGYGFITFETEDQAEEI 123 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +1 Query: 412 KIFVGGLASNVTEVEFXRYFEQF 480 +IFVGG ++ TE E +FE+F Sbjct: 68 RIFVGGFPTSTTETELREHFEKF 90
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/61 (32%), Positives = 34/61 (55%) Frame = +1 Query: 73 RRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIV 252 R GGE + + L+V + +D+L FG++G + + I+RD+ TG+ RG F+ Sbjct: 187 RPGGESIKDTN---LYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVR 243 Query: 253 F 255 F Sbjct: 244 F 244
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 40.0 bits (92), Expect = 0.003 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Frame = +1 Query: 61 ADRGRRGGEDAMEADSGKLF-VGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARG 237 +D R E+ + G+ F V G+S T L++ F R+G+V A ++ + + AR Sbjct: 411 SDTKRLSREEKGRSSCGRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARC 470 Query: 238 FGFIVFAEAGVAERVT--MDKHMIDGRMVEAKKA 333 +GF+ + A A + + K + G+M+ +KA Sbjct: 471 YGFVTMSTAEEATKCINHLHKTELHGKMISVEKA 504
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 40.0 bits (92), Expect = 0.003 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEA--GVAE 276 +SG+LF+ + + D + +F FG V + I D+ T ++G F+ F++ +A Sbjct: 312 ESGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAA 371 Query: 277 RVTMDKHMIDGRMVEAKKAVPRD 345 D GR++ AV +D Sbjct: 372 YRAKDGSTFQGRLLHLLPAVNKD 394 Score = 34.7 bits (78), Expect = 0.14 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVT-- 285 +L V G+ + RLR++F + G VT+ +MR R G +R FGF+ + A++ Sbjct: 3 RLIVRGLPSYLTDARLREHFSQKGAVTDVKLMR-RPDGTSRKFGFVGYRSEQEAQQALDY 61 Query: 286 MDKHMIDGRMVEAKKAVPRDDQSI 357 ++ ID + + A D+ + Sbjct: 62 FNRTFIDTSRISIELAKKIGDEEL 85
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 39.7 bits (91), Expect = 0.004 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Frame = +1 Query: 94 MEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF--AEAG 267 M D ++VGG++ E E L + F FG++ + + D + R RGF FI + +E Sbjct: 1 MSNDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDA 60 Query: 268 VAERVTMDKHMIDGRMVEAKKAVP 339 A M+ + GR + A P Sbjct: 61 AAAIDNMNDSELCGRTIRVNLAKP 84
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 39.7 bits (91), Expect = 0.004 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEA-GVAER 279 D +FVG + ++ ++ L ++F G + I+R+ TG RGFG+++F V Sbjct: 289 DKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 348 Query: 280 VTMDKHMIDGRMVEAKKAVPRD 345 + ++ + GR + ++V ++ Sbjct: 349 LKLNNSELMGRKLRVMRSVNKE 370
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 39.7 bits (91), Expect = 0.004 Identities = 17/51 (33%), Positives = 31/51 (60%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF 255 D+ + V +S +T E L++ F FG ++ + +D+ TG+++GF FI F Sbjct: 237 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 39.7 bits (91), Expect = 0.004 Identities = 17/51 (33%), Positives = 31/51 (60%) Frame = +1 Query: 103 DSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF 255 D+ + V +S +T E L++ F FG ++ + +D+ TG+++GF FI F Sbjct: 237 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/81 (28%), Positives = 42/81 (51%) Frame = +1 Query: 85 EDAMEADSGKLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEA 264 E+ + +L++G ++ + E+ L++ F +GE++EA I ++N F F+ Sbjct: 105 EEIKFSGRNRLYIGNLTSDVTEEELKELFSPYGEISEAFINAEKN------FAFLKIDYR 158 Query: 265 GVAERVTMDKHMIDGRMVEAK 327 AER D +DGRM + K Sbjct: 159 ANAERAKKD---LDGRMRKNK 176
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 39.3 bits (90), Expect = 0.006 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 2/114 (1%) Frame = +1 Query: 7 PRLXXXXXXXXXXXXTTTADRGRRGGEDAMEADSGKLFVGGISWETDEDRLRDYFGRFGE 186 P + T D G D + +L V I + + L+ F +FG Sbjct: 123 PVVATTAGSTNGSAAVTQPDPSTSSGPDGPK----RLHVSNIPFRFRDPDLKTMFEKFGV 178 Query: 187 VTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDKH--MIDGRMVEAKKAVPR 342 V++ I+ N ++GFGF+ AER + H MI+GR +E A R Sbjct: 179 VSDVEIIF--NERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCATAR 230
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 39.3 bits (90), Expect = 0.006 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 3/93 (3%) Frame = +1 Query: 64 DRGRRGGEDAMEADSGK-LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGF 240 ++GR G + SG+ L+V G+S T L++ F ++G+V A ++ + + AR + Sbjct: 397 EKGRVG------SGSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCY 450 Query: 241 GFIVFAEAGVAERVTMDKHM--IDGRMVEAKKA 333 GF+ + + A + H + GRM+ +KA Sbjct: 451 GFVTMSTSDEATKCISHLHRTELHGRMISVEKA 483
>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12| Length = 426 Score = 39.3 bits (90), Expect = 0.006 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTM-- 288 +FVG + +E E+ L +F G + I+RD T +GF ++ FA+ + + Sbjct: 261 VFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFADLVSVNKALLLN 320 Query: 289 DKHMIDGRMVEAKKAVPRDDQSIASKNNGSSI 384 DK M G+ + + R+ Q + ++N +++ Sbjct: 321 DKKMAVGKGRKLRVTRCRNMQKVQRQSNTAAL 352
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 39.3 bits (90), Expect = 0.006 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 4/130 (3%) Frame = +1 Query: 112 KLFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVF--AEAGVAERVT 285 +++VG IS+E ED +R F FG + + D T + +GF F+ + E Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190 Query: 286 MDKHMIDGRMVEAKKA--VPRDDQSIASKNNGSSIGSPGPVRTRKIFVGGLASNVTEVEF 459 M+ ++ GR ++ + +P+ Q I + +I+V + +++E + Sbjct: 191 MNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAK-------SFNRIYVASIHPDLSEEDI 243 Query: 460 XRYFEQFGMI 489 FE FG I Sbjct: 244 KSVFEAFGPI 253
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 38.9 bits (89), Expect = 0.008 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 4/93 (4%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERV--TM 288 LFV ++ T D L F RFG++ +++D+ TG + + FI F + AER M Sbjct: 264 LFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAERAYFKM 323 Query: 289 DKHMIDGR--MVEAKKAVPRDDQSIASKNNGSS 381 ++D R V+ ++V R K N S Sbjct: 324 QNVLVDDRRIWVDFSQSVSRLHGDWVKKRNAGS 356
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 38.9 bits (89), Expect = 0.008 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 3/92 (3%) Frame = +1 Query: 115 LFVGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEAGVAERVTMDK 294 LFVG + D+L + F + G V + ++ ++ + RGFG++ F+ +R + Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 295 HMIDGRMVE---AKKAVPRDDQSIASKNNGSS 381 +G ++ AKK + + N S Sbjct: 65 TTFEGCKIDVTVAKKKLRNKSKETRKNENAES 96
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 38.9 bits (89), Expect = 0.008 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Frame = +1 Query: 61 ADRGRRGGEDAMEADSGKLF-VGGISWETDEDRLRDYFGRFGEVTEAVIMRDRNTGRARG 237 +D R E+ + G+ F V G+S T L++ F ++G+V A ++ + + AR Sbjct: 389 SDTKRLSKEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARC 448 Query: 238 FGFIVFAEAGVAERVT--MDKHMIDGRMVEAKKA 333 +GF+ + A A + + K + G+M+ +KA Sbjct: 449 YGFVTMSTAEEATKCINHLHKTELHGKMISVEKA 482 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,862,605 Number of Sequences: 219361 Number of extensions: 841358 Number of successful extensions: 3837 Number of sequences better than 10.0: 354 Number of HSP's better than 10.0 without gapping: 3231 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3683 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
