ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd17e16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK069184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009A17, full insert sequence Length = 1154 Score = 375 bits (189), Expect = e-100 Identities = 334/381 (87%), Gaps = 1/381 (0%) Strand = Plus / Plus Query: 207 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 266 |||||||| || |||||||| | ||||||||| |||||| |||| ||||||||||||||| Sbjct: 256 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 315 Query: 267 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 326 || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct: 316 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 375 Query: 327 gaggacggcgtcgtctcccttaggcttgaaggggcgtgcagcagttgtcccagctcgacg 386 |||||||||||| ||||||| | ||| ||||| |||||| |||| || |||||||||||| Sbjct: 376 gaggacggcgtcatctccctcaagctcgaaggagcgtgcggcagctgccccagctcgacg 435 Query: 387 acgacgatgaacatgggcatcgagcgagtgctcaaggagaagttcggtgacgccatcaag 446 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||| | || Sbjct: 436 acgacgatgaagatgggcatcgagcgcgtgctcaaggagaagttcggcgacgccgtaaaa 495 Query: 447 gacatccgccaggtgttcgacggggaccagcaacccgaagagacgacgcctgaggcggtg 506 || ||||||||||||||||||| || ||||| || | ||| | ||||| |||||||| Sbjct: 496 gatatccgccaggtgttcgacgacgatcagcagccggcggagccaacgccccaggcggtg 555 Query: 507 aaccggcacctggacatactgcgtccggcgatcgcgaactacggcgggagtgtgggaggt 566 ||| | ||||||||||||||||| ||||||||||| |||||||||||||| || |||||| Sbjct: 556 aacggccacctggacatactgcggccggcgatcgccaactacggcgggagcgt-ggaggt 614 Query: 567 gcttgccgttgacggcgagga 587 | | ||||| ||||||||||| Sbjct: 615 ggtcgccgtcgacggcgagga 635
>gb|AY110393.1| Zea mays CL5132_1 mRNA sequence Length = 844 Score = 204 bits (103), Expect = 2e-49 Identities = 220/261 (84%) Strand = Plus / Minus Query: 207 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 266 |||| ||| || |||||||| ||||| ||||| ||||| ||||| ||||||||||||||| Sbjct: 762 ggagncggcctctactcggcggcgacgtacgagctgaccccggaaaacgtcgaccgcgtc 703 Query: 267 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 326 || |||||||| || || ||||||||||| ||| | ||||| ||||||| |||| Sbjct: 702 ctggacgacgtccggccgtacctcatctctgacnnnnncaacgtcaccgtcgttgccgtc 643 Query: 327 gaggacggcgtcgtctcccttaggcttgaaggggcgtgcagcagttgtcccagctcgacg 386 |||||||| ||| ||||||| | ||| ||||| || ||| |||| || ||||||| |||| Sbjct: 642 gaggacggtgtcatctccctcaagctcgaaggagcttgcggcagctgccccagcttgacg 583 Query: 387 acgacgatgaacatgggcatcgagcgagtgctcaaggagaagttcggtgacgccatcaag 446 ||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| Sbjct: 582 acgacgatgaatatgggcatcgagcgtgtgctcaaggagaagttcggcgacgctttcaag 523 Query: 447 gacatccgccaggtgttcgac 467 || ||||| |||||||||||| Sbjct: 522 gaaatccgtcaggtgttcgac 502 Score = 103 bits (52), Expect = 6e-19 Identities = 61/64 (95%) Strand = Plus / Minus Query: 498 gaggcggtgaaccggcacctggacatactgcgtccggcgatcgcgaactacggcgggagt 557 |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 471 gaggcggtgaaccggcacctggacatactgcggccagcgatcgcgaactacggcgggagc 412 Query: 558 gtgg 561 |||| Sbjct: 411 gtgg 408
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 174 bits (88), Expect = 2e-40 Identities = 127/140 (90%) Strand = Plus / Plus Query: 207 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 266 |||||||| || |||||||| | ||||||||| |||||| |||| ||||||||||||||| Sbjct: 11245233 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 11245292 Query: 267 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 326 || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct: 11245293 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 11245352 Query: 327 gaggacggcgtcgtctccct 346 |||||||||||| ||||||| Sbjct: 11245353 gaggacggcgtcatctccct 11245372 Score = 137 bits (69), Expect = 5e-29 Identities = 99/109 (90%) Strand = Plus / Plus Query: 360 gcgtgcagcagttgtcccagctcgacgacgacgatgaacatgggcatcgagcgagtgctc 419 |||||| |||| || ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 11245516 gcgtgcggcagctgccccagctcgacgacgacgatgaagatgggcatcgagcgcgtgctc 11245575 Query: 420 aaggagaagttcggtgacgccatcaaggacatccgccaggtgttcgacg 468 |||||||||||||| |||||| | || || ||||||||||||||||||| Sbjct: 11245576 aaggagaagttcggcgacgccgtaaaagatatccgccaggtgttcgacg 11245624 Score = 97.6 bits (49), Expect = 4e-17 Identities = 80/89 (89%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 499 aggcggtgaaccggcacctggacatactgcgtccggcgatcgcgaactacggcgggagtg 558 ||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||| | Sbjct: 11245729 aggcggtgaacggccacctggacatactgcggccggcgatcgccaactacggcgggagcg 11245788 Query: 559 tgggaggtgcttgccgttgacggcgagga 587 | ||||||| | ||||| ||||||||||| Sbjct: 11245789 t-ggaggtggtcgccgtcgacggcgagga 11245816 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 cgacggcggcgacgtcgccg 315 |||||||||||||||||||| Sbjct: 26000081 cgacggcggcgacgtcgccg 26000100 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cggcggcgacgtcgccgtcg 318 |||||||||||||||||||| Sbjct: 15507576 cggcggcgacgtcgccgtcg 15507557
>gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0085H08, from chromosome 3, complete sequence Length = 130656 Score = 174 bits (88), Expect = 2e-40 Identities = 127/140 (90%) Strand = Plus / Plus Query: 207 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 266 |||||||| || |||||||| | ||||||||| |||||| |||| ||||||||||||||| Sbjct: 24186 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 24245 Query: 267 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 326 || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct: 24246 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 24305 Query: 327 gaggacggcgtcgtctccct 346 |||||||||||| ||||||| Sbjct: 24306 gaggacggcgtcatctccct 24325 Score = 137 bits (69), Expect = 5e-29 Identities = 99/109 (90%) Strand = Plus / Plus Query: 360 gcgtgcagcagttgtcccagctcgacgacgacgatgaacatgggcatcgagcgagtgctc 419 |||||| |||| || ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 24469 gcgtgcggcagctgccccagctcgacgacgacgatgaagatgggcatcgagcgcgtgctc 24528 Query: 420 aaggagaagttcggtgacgccatcaaggacatccgccaggtgttcgacg 468 |||||||||||||| |||||| | || || ||||||||||||||||||| Sbjct: 24529 aaggagaagttcggcgacgccgtaaaagatatccgccaggtgttcgacg 24577 Score = 97.6 bits (49), Expect = 4e-17 Identities = 80/89 (89%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 499 aggcggtgaaccggcacctggacatactgcgtccggcgatcgcgaactacggcgggagtg 558 ||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||| | Sbjct: 24682 aggcggtgaacggccacctggacatactgcggccggcgatcgccaactacggcgggagcg 24741 Query: 559 tgggaggtgcttgccgttgacggcgagga 587 | ||||||| | ||||| ||||||||||| Sbjct: 24742 t-ggaggtggtcgccgtcgacggcgagga 24769
>gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0085H08, from chromosome 3, complete sequence Length = 126708 Score = 174 bits (88), Expect = 2e-40 Identities = 127/140 (90%) Strand = Plus / Minus Query: 207 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 266 |||||||| || |||||||| | ||||||||| |||||| |||| ||||||||||||||| Sbjct: 35815 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 35756 Query: 267 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 326 || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct: 35755 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 35696 Query: 327 gaggacggcgtcgtctccct 346 |||||||||||| ||||||| Sbjct: 35695 gaggacggcgtcatctccct 35676 Score = 137 bits (69), Expect = 5e-29 Identities = 99/109 (90%) Strand = Plus / Minus Query: 360 gcgtgcagcagttgtcccagctcgacgacgacgatgaacatgggcatcgagcgagtgctc 419 |||||| |||| || ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 35532 gcgtgcggcagctgccccagctcgacgacgacgatgaagatgggcatcgagcgcgtgctc 35473 Query: 420 aaggagaagttcggtgacgccatcaaggacatccgccaggtgttcgacg 468 |||||||||||||| |||||| | || || ||||||||||||||||||| Sbjct: 35472 aaggagaagttcggcgacgccgtaaaagatatccgccaggtgttcgacg 35424 Score = 97.6 bits (49), Expect = 4e-17 Identities = 80/89 (89%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 499 aggcggtgaaccggcacctggacatactgcgtccggcgatcgcgaactacggcgggagtg 558 ||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||| | Sbjct: 35319 aggcggtgaacggccacctggacatactgcggccggcgatcgccaactacggcgggagcg 35260 Query: 559 tgggaggtgcttgccgttgacggcgagga 587 | ||||||| | ||||| ||||||||||| Sbjct: 35259 t-ggaggtggtcgccgtcgacggcgagga 35232
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 174 bits (88), Expect = 2e-40 Identities = 127/140 (90%) Strand = Plus / Plus Query: 207 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 266 |||||||| || |||||||| | ||||||||| |||||| |||| ||||||||||||||| Sbjct: 11241996 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 11242055 Query: 267 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 326 || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct: 11242056 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 11242115 Query: 327 gaggacggcgtcgtctccct 346 |||||||||||| ||||||| Sbjct: 11242116 gaggacggcgtcatctccct 11242135 Score = 137 bits (69), Expect = 5e-29 Identities = 99/109 (90%) Strand = Plus / Plus Query: 360 gcgtgcagcagttgtcccagctcgacgacgacgatgaacatgggcatcgagcgagtgctc 419 |||||| |||| || ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 11242279 gcgtgcggcagctgccccagctcgacgacgacgatgaagatgggcatcgagcgcgtgctc 11242338 Query: 420 aaggagaagttcggtgacgccatcaaggacatccgccaggtgttcgacg 468 |||||||||||||| |||||| | || || ||||||||||||||||||| Sbjct: 11242339 aaggagaagttcggcgacgccgtaaaagatatccgccaggtgttcgacg 11242387 Score = 97.6 bits (49), Expect = 4e-17 Identities = 80/89 (89%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 499 aggcggtgaaccggcacctggacatactgcgtccggcgatcgcgaactacggcgggagtg 558 ||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||| | Sbjct: 11242492 aggcggtgaacggccacctggacatactgcggccggcgatcgccaactacggcgggagcg 11242551 Query: 559 tgggaggtgcttgccgttgacggcgagga 587 | ||||||| | ||||| ||||||||||| Sbjct: 11242552 t-ggaggtggtcgccgtcgacggcgagga 11242579 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 cgacggcggcgacgtcgccg 315 |||||||||||||||||||| Sbjct: 26091390 cgacggcggcgacgtcgccg 26091409 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cggcggcgacgtcgccgtcg 318 |||||||||||||||||||| Sbjct: 15502110 cggcggcgacgtcgccgtcg 15502091
>gb|U95179.1|PAU95179 Prunus armeniaca putative NifU protein mRNA, partial cds Length = 636 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 279 cgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgtagaggacggcgtc 338 |||||||| |||||| | || ||||| ||||||| ||| |||||||| |||||||||||| Sbjct: 43 cgcccctatctcatcgctgatggcggtgacgtcgacgttgtgtccgttgaggacggcgtc 102 Query: 339 gt 340 || Sbjct: 103 gt 104
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Minus Query: 248 ggataacgtcgaccgcgtcctcgacgacgtgcgcccctacctcatctccgacggcggcga 307 |||||||||||| | ||||||||||| |||||||||| | || |||||||||||| | Sbjct: 3071251 ggataacgtcgagctggtcctcgacgaattgcgcccctatttgatgtccgacggcggcaa 3071192 Query: 308 cgtcg 312 ||||| Sbjct: 3071191 cgtcg 3071187
>emb|X04616.2|ANPSBA1 Synechococcus sp. PCC 7942 pmg1 (partial), secG, bcsA, psbK, tgt, sys, end3, pur6, dpdX, dxs, leu1, sek0003, sek0005, sek0006, sek0007, sek0008, sek0009, sek0010, sek0011, sek0012, sel0013, sek0016, sel0017, sek0018, sel0019, sek0020, sek0022, sek0024, sek0025, sek0026, sek0027, sel0028, sek0030, sek0031, sel0032, sel0033, sel0034, sel0035, sel0036, sel0037, sel0039, sek0041, sek0043, sek0044, sek0045, psba-I gene, sek0047 and sel0048 (partial) genes Length = 42558 Score = 44.1 bits (22), Expect = 0.51 Identities = 43/50 (86%) Strand = Plus / Plus Query: 263 cgtcctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcg 312 |||||| ||||| |||||||||||||||| |||| |||||| |||||| Sbjct: 14915 cgtcctggacgagctgcgcccctacctcattgccgatggcggcaacgtcg 14964
>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16 Length = 349737 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 293 ctccgacggcggcgacgtcgcc 314 |||||||||||||||||||||| Sbjct: 317729 ctccgacggcggcgacgtcgcc 317750
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 369 agttgtcccagctcgacgacga 390 |||||||||||||||||||||| Sbjct: 3863412 agttgtcccagctcgacgacga 3863391
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 44.1 bits (22), Expect = 0.51 Identities = 43/50 (86%) Strand = Plus / Plus Query: 263 cgtcctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcg 312 |||||| ||||| |||||||||||||||| |||| |||||| |||||| Sbjct: 1180629 cgtcctggacgagctgcgcccctacctcattgccgatggcggcaacgtcg 1180678
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 369 agttgtcccagctcgacgacga 390 |||||||||||||||||||||| Sbjct: 3864086 agttgtcccagctcgacgacga 3864065
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 44.1 bits (22), Expect = 0.51 Identities = 43/50 (86%) Strand = Plus / Minus Query: 263 cgtcctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcg 312 |||||| ||||| |||||||||||||||| |||| |||||| |||||| Sbjct: 440251 cgtcctggacgagctgcgcccctacctcattgccgatggcggcaacgtcg 440202
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 294 tccgacggcggcgacgtcgccgtcg 318 |||||||||||||| |||||||||| Sbjct: 1458611 tccgacggcggcgaggtcgccgtcg 1458587
>ref|XM_775936.1| PREDICTED: Strongylocentrotus purpuratus similar to CG11081-PA, isoform A (LOC575541), mRNA Length = 4581 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 atctccgacggcggcgacgtc 311 ||||||||||||||||||||| Sbjct: 1545 atctccgacggcggcgacgtc 1525
>gb|AC131967.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0049K09, complete sequence Length = 154181 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 294 tccgacggcggcgacgtcgccgtcg 318 |||||||||||||| |||||||||| Sbjct: 71365 tccgacggcggcgaggtcgccgtcg 71341
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 ataacgtcgaccgcgtcctcg 270 ||||||||||||||||||||| Sbjct: 869679 ataacgtcgaccgcgtcctcg 869699
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 294 tccgacggcggcgacgtcgccgtcg 318 |||||||||||||| |||||||||| Sbjct: 1458611 tccgacggcggcgaggtcgccgtcg 1458587
>gb|AY566569.1| Felis catus myocilin mRNA, complete cds Length = 2125 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 ggacatccgccaggtgttcga 466 ||||||||||||||||||||| Sbjct: 943 ggacatccgccaggtgttcga 963
>dbj|AK107098.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H10, full insert sequence Length = 1686 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 294 tccgacggcggcgacgtcgccgtcg 318 |||||||||||||| |||||||||| Sbjct: 73 tccgacggcggcgaggtcgccgtcg 49
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 ccgacggcggcgacgtcgccg 315 ||||||||||||||||||||| Sbjct: 1373632 ccgacggcggcgacgtcgccg 1373612 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 gcggcgacgtcgccgtcgtg 320 |||||||||||||||||||| Sbjct: 1082174 gcggcgacgtcgccgtcgtg 1082155
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 294 tccgacggcggcgacgtcgccgtcg 318 |||||||||||||| |||||||||| Sbjct: 1458608 tccgacggcggcgaggtcgccgtcg 1458584
>ref|XM_482570.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1110 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 cgacggcggcgacgtcgccg 315 |||||||||||||||||||| Sbjct: 960 cgacggcggcgacgtcgccg 979
>ref|XM_469195.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1405 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cgacggcggcgacgtcgccg 315 |||||||||||||||||||| Sbjct: 587 cgacggcggcgacgtcgccg 568
>ref|XM_470813.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1254 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cggcggcgacgtcgccgtcg 318 |||||||||||||||||||| Sbjct: 1168 cggcggcgacgtcgccgtcg 1149
>gb|AC145388.2| Oryza sativa chromosome 3 BAC OSJNBb0036M02 genomic sequence, complete sequence Length = 125380 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cgacggcggcgacgtcgccg 315 |||||||||||||||||||| Sbjct: 103005 cgacggcggcgacgtcgccg 102986
>ref|XM_612765.2| PREDICTED: Bos taurus similar to diencephalon/mesencephalon homeobox 1 isoform a (LOC540714), mRNA Length = 1776 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 23 gtcgctgaccgcggccgccgctgc 46 ||||||| |||||||||||||||| Sbjct: 1593 gtcgctgtccgcggccgccgctgc 1616
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 gcggcgacgtcgccgtcgtg 320 |||||||||||||||||||| Sbjct: 3121701 gcggcgacgtcgccgtcgtg 3121720
>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster, complete sequence Length = 135638 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 cgtcgctgaccgcggccgcc 41 |||||||||||||||||||| Sbjct: 58619 cgtcgctgaccgcggccgcc 58638
>gb|AC135792.3| Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence, complete sequence Length = 140720 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cgacggcggcgacgtcgccg 315 |||||||||||||||||||| Sbjct: 7839 cgacggcggcgacgtcgccg 7820
>gb|AC099323.6| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence Length = 115079 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cggcggcgacgtcgccgtcg 318 |||||||||||||||||||| Sbjct: 7127 cggcggcgacgtcgccgtcg 7108
>ref|XM_380597.1| Gibberella zeae PH-1 chromosome 1 METK_NEUCR S-adenosylmethionine synthetase (Methionine adenosyltransferase) (AdoMet synthetase) (FG00421.1) partial mRNA Length = 1209 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 gtgacgccatcaaggacatc 452 |||||||||||||||||||| Sbjct: 269 gtgacgccatcaaggacatc 288
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 cgctgaccgcggccgccgct 44 |||||||||||||||||||| Sbjct: 1048445 cgctgaccgcggccgccgct 1048464
>gb|AY327039.1| Oryza sativa (japonica cultivar-group) iron transporter Fe3 mRNA, complete cds Length = 1380 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cgacggcggcgacgtcgccg 315 |||||||||||||||||||| Sbjct: 561 cgacggcggcgacgtcgccg 542
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 cgcggccgccgctgctacctcgtc 55 |||||||||||| ||||||||||| Sbjct: 2510694 cgcggccgccgccgctacctcgtc 2510717
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ccgacggcggcgacgtcgcc 314 |||||||||||||||||||| Sbjct: 128848 ccgacggcggcgacgtcgcc 128829
>gb|DQ397877.1| Cenarchaeum symbiosum clone C06F03, complete sequence Length = 37987 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 atgaacatgggcatcgagcg 412 |||||||||||||||||||| Sbjct: 13122 atgaacatgggcatcgagcg 13103
>gb|AE005908.1| Caulobacter crescentus CB15 section 234 of 359 of the complete genome Length = 11320 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 cgacggcggcgacgtcgccg 315 |||||||||||||||||||| Sbjct: 1920 cgacggcggcgacgtcgccg 1939
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 cgacggcggcgacgtcgccg 315 |||||||||||||||||||| Sbjct: 21150384 cgacggcggcgacgtcgccg 21150403
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 gcgtcctcgacgacgtgcgc 281 |||||||||||||||||||| Sbjct: 1652711 gcgtcctcgacgacgtgcgc 1652692 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cgacggcggcgacgtcgccg 315 |||||||||||||||||||| Sbjct: 55620 cgacggcggcgacgtcgccg 55601
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 254 cgtcgaccgcgtcctcgacgacgt 277 ||||||||||| |||||||||||| Sbjct: 1790964 cgtcgaccgcgacctcgacgacgt 1790941
>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0413H11 Length = 147655 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 cgacggcggcgacgtcgccg 315 |||||||||||||||||||| Sbjct: 121594 cgacggcggcgacgtcgccg 121613
>dbj|AK107681.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-A08, full insert sequence Length = 1405 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cgacggcggcgacgtcgccg 315 |||||||||||||||||||| Sbjct: 587 cgacggcggcgacgtcgccg 568
>emb|AJ331161.1|HSA331161 Homo sapiens genomic sequence surrounding NotI site, clone NR5-DE22RS Length = 714 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 ctccgacggcggcgacgtcg 312 |||||||||||||||||||| Sbjct: 223 ctccgacggcggcgacgtcg 204
>gb|AF065891.1|AF065891 Ralstonia eutropha JMP134 phenol hydroxylase gene cluster, complete sequence Length = 8620 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 cgcggccgccgctgctacctcgtc 55 |||||||||||| ||||||||||| Sbjct: 1930 cgcggccgccgccgctacctcgtc 1907
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cgacggcggcgacgtcgccg 315 |||||||||||||||||||| Sbjct: 659260 cgacggcggcgacgtcgccg 659241
>dbj|AB070226.1| Oryza sativa OsIRT1 mRNA for iron regulated metal transporter, complete cds Length = 1395 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cgacggcggcgacgtcgccg 315 |||||||||||||||||||| Sbjct: 561 cgacggcggcgacgtcgccg 542 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,005,560 Number of Sequences: 3902068 Number of extensions: 3005560 Number of successful extensions: 75466 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73090 Number of HSP's gapped (non-prelim): 2369 length of query: 587 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 564 effective length of database: 17,143,297,704 effective search space: 9668819905056 effective search space used: 9668819905056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
