ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd16p05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CLAT_HUMAN (P28329) Choline O-acetyltransferase (EC 2.3.1.6) (CH... 30 2.2
2WNT11_HUMAN (O96014) Protein Wnt-11 precursor 28 4.9
3WNT11_COTJA (P51891) Protein Wnt-11 precursor 28 4.9
4WNT11_CHICK (P49339) Protein Wnt-11 precursor 28 4.9
5SYV_PYRKO (Q5JGN7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 28 4.9
6CLAT_PIG (P13222) Choline O-acetyltransferase (EC 2.3.1.6) (CHOA... 28 8.3

>CLAT_HUMAN (P28329) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)|
           (Choline acetylase) (ChAT)
          Length = 748

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -1

Query: 232 ASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYALFKGWLLLG 86
           ASL  G L Y+ +L SHS     +   L  +      YY LF  + L G
Sbjct: 236 ASLISGVLSYKALLDSHSIPTDCAKGQLSGQPLCMKQYYGLFSSYRLPG 284



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>WNT11_HUMAN (O96014) Protein Wnt-11 precursor|
          Length = 354

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 138 ALDQ*AITHSLKGGCF*ANLPGCLCTP 58
           AL   AI+H++   C   +LPGC C P
Sbjct: 116 ALSAAAISHAIARACTSGDLPGCSCGP 142



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>WNT11_COTJA (P51891) Protein Wnt-11 precursor|
          Length = 354

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 138 ALDQ*AITHSLKGGCF*ANLPGCLCTP 58
           AL   AI+H++   C   +LPGC C P
Sbjct: 116 ALSAAAISHTIARACTTGDLPGCSCGP 142



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>WNT11_CHICK (P49339) Protein Wnt-11 precursor|
          Length = 354

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 138 ALDQ*AITHSLKGGCF*ANLPGCLCTP 58
           AL   AI+H++   C   +LPGC C P
Sbjct: 116 ALSAAAISHTIARACTTGDLPGCSCGP 142



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>SYV_PYRKO (Q5JGN7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 888

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -1

Query: 160 PVHLQRKGA---RSVSYYALFKGWLLLGKPPW 74
           P  L+ +G    R+ ++Y +F+ W+L G+ PW
Sbjct: 487 PTALRPQGTDIIRTWAFYTIFRTWVLTGEKPW 518



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>CLAT_PIG (P13222) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)|
           (Choline acetylase) (ChAT)
          Length = 640

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 232 ASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYALFKGWLLLG 86
           A+L  G L Y+ +L SHS     +   L  +      YY LF  + L G
Sbjct: 128 ANLISGVLSYKALLDSHSIPIDCAKGQLSGQPLCMKQYYGLFSSYRLPG 176


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,564,408
Number of Sequences: 219361
Number of extensions: 537964
Number of successful extensions: 1417
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 80,573,946
effective HSP length: 54
effective length of database: 68,728,452
effective search space used: 1649482848
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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