>SRY_MOUSE (Q05738) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 395

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = -1

Query: 189 HQQMAEFHEHLYNYLQLQQKTRFGYHQLYQAFRILHSPLLHCQKGDPQHQKNYLLPDRQE 10
           HQQ  +FH+H     Q QQ+    +HQ  Q F   H      Q  D Q Q+     D Q+
Sbjct: 218 HQQQQQFHDHQQQQQQQQQQQFHDHHQQKQQFHDHHHHQQQQQFHDHQQQQQQ-FHDHQQ 276

Query: 9   LAH 1
             H
Sbjct: 277 QQH 279



 Score = 31.6 bits (70), Expect = 1.4
 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
 Frame = -1

Query: 255 QPLSPFHFGPQRQLLCQLPCH*HQQMAEFHEHLYNYLQL----QQKTRF-GYHQLYQAFR 91
           Q    FH  PQ+Q       H  QQ  +FH+H     Q     QQK +F  +HQ  Q F 
Sbjct: 286 QQKQQFHDHPQQQQQFHDHHHQQQQKQQFHDHHQQKQQFHDHHQQKQQFHDHHQQQQQFH 345

Query: 90  ILHSPLLHCQKGDPQHQKNYLLPDRQ 13
             H      Q+   Q Q+     D+Q
Sbjct: 346 DHHQ-----QQQQQQQQQQQQFHDQQ 366

>SYA_PROAC (Q6A8I8) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 892

 Score = 32.3 bits (72), Expect = 0.82
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 168 GTQPFAGANDMAVDTTIASVDQNGKDSTAA 257
           G  PF G  D+ VDTT+  +  NG   TAA
Sbjct: 468 GETPFLGYTDLTVDTTVTGIIANGTSVTAA 497

>OVO_DROME (P51521) Protein ovo (Protein shaven baby)|
          Length = 1351

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 41/145 (28%), Positives = 54/145 (37%), Gaps = 7/145 (4%)
 Frame = -1

Query: 444  QQSASSVYHQQ*LNLPDHHSFHQNSXXXXXXXXXXXHEPTLSFLVYPSVSEALMFQVAIQ 265
            QQ   SV  QQ  N+   H   Q              +P  S   Y   +  LM Q   Q
Sbjct: 851  QQQQHSVQQQQQHNVQQQHGVQQQHVQQ---------QPPPS---YQHATRGLMMQQQPQ 898

Query: 264  LQG-QPLSPFHFGPQRQLLCQLP--CH*HQQMAEFHEHLYN----YLQLQQKTRFGYHQL 106
              G Q  +      Q+QLL Q     H  QQ  + H   Y     Y Q QQ+ +  +HQ 
Sbjct: 899  HGGYQQQAAIMSQQQQQLLSQQQQQSHHQQQQQQQHAAAYQQHNIYAQQQQQQQQQHHQQ 958

Query: 105  YQAFRILHSPLLHCQKGDPQHQKNY 31
             Q  +  H    H Q+  PQ Q ++
Sbjct: 959  QQQQQ--HHHFHHQQQQQPQPQSHH 981

>NCAP_IBVDE (Q9J4B0) Nucleocapsid protein (N structural protein) (NC)|
          Length = 409

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 69  GARGNVEFERLDIADDIQIESSVGVADNCIDVHGTQP 179
           G    +EF  +   DD Q ++ V + D C+D  GT+P
Sbjct: 295 GLHLKIEFTTVVSRDDPQFDNYVKICDQCVDGVGTRP 331

>Y1000_PSEAE (P20581) Hypothetical protein PA1000|
          Length = 301

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 235 MERTQRLPLKLNCNLKHQSLRNGRVNQEG-QSRFVQCLKMLK 357
           +ER QRLP  L     H  L  GR+  +G +S + +CL++ +
Sbjct: 205 LERLQRLPTLLQLIPGHGGLLRGRLAADGAESAYTECLRLCR 246

>GBF_DICDI (P36417) G-box-binding factor (GBF)|
          Length = 708

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -1

Query: 195 H*HQQMAEFHEHLYNYLQLQQKTRFGYHQLYQAFRILHSPLLHCQKGDPQHQKNYLLPDR 16
           H HQQ  +  +H   + Q QQ+ +  +HQ  Q  +       H      QHQ N     +
Sbjct: 191 HQHQQQQQQQQHQQQHHQQQQQQQQQHHQQQQHHQHSQPQQQHQHNQQQQHQHNQQQHQQ 250

Query: 15  QE 10
           Q+
Sbjct: 251 QQ 252

>SRY_MUSSP (Q62563) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 355

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = -1

Query: 255 QPLSPFHFGPQRQLLCQLPCH*HQQMAE-FHEHLYNYLQLQQKTRFGYHQLYQAFRILHS 79
           Q    FH   Q+Q   Q   H HQQ  + FH+H ++  Q QQ+    +HQ  Q F   H 
Sbjct: 195 QQKQQFHDHQQQQQ--QFHDHHHQQQQQQFHDHHHH--QQQQQQFHDHHQQKQQFHDHHQ 250

Query: 78  PLLHCQKGD-PQHQKNY 31
                Q  D PQ Q+ +
Sbjct: 251 QQQQQQFHDHPQQQQQF 267

>TIP60_DROME (Q960X4) Histone acetyltransferase Tip60 (EC 2.3.1.48)|
          Length = 541

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 270 IQLQGQPLSPFHFGPQRQLLCQLPC 196
           I+L    + P++F P  Q LCQ+PC
Sbjct: 263 IELGRHRIKPWYFSPYPQELCQMPC 287

>PAHO_CANFA (P01299) Pancreatic prohormone precursor (Pancreatic polypeptide)|
           (PP) [Contains: Pancreatic hormone; Pancreatic
           icosapeptide]
          Length = 93

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = -1

Query: 318 FLVYPSVSEALMFQVAIQLQGQPLSPFHFGPQRQLLCQLPCH*HQQMAEFHEHLYNYLQL 139
           FL+  S   AL+ Q  +  +G PL P + G              +QMA++   L  Y+ +
Sbjct: 9   FLLLLSACVALLLQPPLGTRGAPLEPVYPGDDAT---------PEQMAQYAAELRRYINM 59

Query: 138 QQKTRFG 118
             + R+G
Sbjct: 60  LTRPRYG 66

>SRY_MUSSI (Q62565) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 311

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = -1

Query: 195 H*HQQMAEFHEHLYNYLQLQQKTRFGYHQLYQAFRILHSPLLHCQKGDPQHQKNYLLPDR 16
           H HQQ  +FH+H     Q QQ+    +HQ  Q F               Q Q+ +  P +
Sbjct: 197 HHHQQQQQFHDH----QQQQQQLHNHHHQQQQQFHDYPQQQQQFHDHPQQKQQFHDRPQQ 252

Query: 15  QELAH 1
           Q+  H
Sbjct: 253 QQQFH 257



 Score = 29.3 bits (64), Expect = 7.0
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -1

Query: 228 PQRQLLCQLPCH*HQQMAEFHEHLYNYLQLQQKTRFGYHQLYQAF 94
           PQ+Q   Q   H HQQ  +FH+H   + Q QQ+    +HQ  Q F
Sbjct: 143 PQQQQQQQFHNH-HQQKQQFHDH---HQQQQQQQFHDHHQQKQQF 183

>UBE4A_RAT (Q6P7A2) Ubiquitin conjugation factor E4 A|
          Length = 1066

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
 Frame = -1

Query: 189 HQQMAEFHEHLY----NYLQLQQKTRFG 118
           HQ MA+FHE +Y    N LQL  +T+ G
Sbjct: 371 HQFMAQFHEKIYQMLKNLLQLSPETKHG 398

>UBE4A_HUMAN (Q14139) Ubiquitin conjugation factor E4 A|
          Length = 1066

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = -1

Query: 303 SVSEALMFQVAIQLQGQPLSPFHFGPQRQLLCQLPCH*HQQMAEFHEHLY----NYLQLQ 136
           S+S  L     ++  G  L+P    PQ   + +   + HQ MA+FHE +Y    N LQL 
Sbjct: 335 SISCLLKTPGVVENHGYFLNPSRSSPQEIKVQE--ANIHQFMAQFHEKIYQMLKNLLQLS 392

Query: 135 QKTR 124
            +T+
Sbjct: 393 PETK 396

>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related
           mesenchymal modulator) (CReMM) (Chromatin remodeling
           factor CHROM1) (Peroxisomal proliferator-activated
           receptor A-inter
          Length = 2897

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
 Frame = -1

Query: 189 HQQMAEFHEHLYNYLQLQQKTRFGYHQLYQAFRILHSPLLH---------CQKGDPQHQK 37
           H Q    H+ + ++ QL Q     +H + Q+F    SP  H         C    PQ+Q 
Sbjct: 55  HVQGTPTHQKMTDFEQLNQFDSIKFHHVNQSFG---SPAEHVLSPHSQFNCSPIHPQNQP 111

Query: 36  NYLLPD 19
           N L PD
Sbjct: 112 NGLFPD 117


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,015,628
Number of Sequences: 219361
Number of extensions: 1286711
Number of successful extensions: 3744
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3733
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)