Clone Information

BLAST Search Result

Clone Name	basd17e04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_467637.1\| Oryza sativa (japonica cultivar-group), mRNA	476	e-131
2	dbj\|AK121868.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	476	e-131
3	dbj\|AK065825.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	476	e-131
4	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	468	e-128
5	dbj\|AP005319.3\| Oryza sativa (japonica cultivar-group) genomic D...	468	e-128
6	ref\|NM_152596.2\| Homo sapiens exonuclease 3'-5' domain-like 1 (E...	42	2.2
7	ref\|XM_523055.1\| PREDICTED: Pan troglodytes LOC467661 (LOC467661...	42	2.2
8	ref\|XM_869892.1\| PREDICTED: Bos taurus similar to CG4051-PA (LOC...	42	2.2
9	ref\|XM_535437.2\| PREDICTED: Canis familiaris similar to CG4051-P...	42	2.2
10	gb\|AC008501.5\| Homo sapiens chromosome 5 clone CTC-439N6, comple...	42	2.2
11	gb\|AC008589.6\| Homo sapiens chromosome 5 clone CTC-574I1, comple...	42	2.2
12	gb\|AC022408.6\| Homo sapiens chromosome 15 clone RP11-118J16 map ...	42	2.2
13	gb\|AC008927.6\| Homo sapiens chromosome 5 clone CTD-2287O23, comp...	42	2.2
14	gb\|AC012652.7\| Homo sapiens chromosome 15 clone RP11-46M12 map 1...	42	2.2
15	gb\|BC030628.2\| Homo sapiens exonuclease 3'-5' domain-like 1, mRN...	42	2.2
16	gb\|AC152957.1\| Mus musculus 6 BAC RP23-353I5 (Roswell Park Cance...	40	8.9
17	gb\|AF134726.1\| Homo sapiens BAC clone 215O12 NG35, NG36, G9A, NG...	40	8.9
18	gb\|AC135110.3\| Mus musculus BAC clone RP23-392G14 from chromosom...	40	8.9
19	emb\|AL844853.23\| Human DNA sequence from clone DAQB-331I12 on ch...	40	8.9
20	emb\|AL671762.10\| Human DNA sequence from clone XXbac-254B15 on c...	40	8.9
21	emb\|AL662834.8\| Human DNA sequence from clone XXbac-40G17 on chr...	40	8.9
22	emb\|AL160269.14\| Human DNA sequence from clone RP11-240L7 on chr...	40	8.9
23	gb\|AY341031.1\| Homo sapiens hydroxysteroid (17-beta) dehydrogena...	40	8.9
24	emb\|AJ719468.1\| Gallus gallus mRNA for hypothetical protein, clo...	40	8.9
25	emb\|CR788238.10\| Human DNA sequence from clone DAMC-45E14 on chr...	40	8.9
26	emb\|CR759784.6\| Human DNA sequence from clone DAMC-303C24 on chr...	40	8.9
27	ref\|NM_001006485.1\| Gallus gallus vaccinia related kinase 1 (VRK...	40	8.9
28	emb\|CR388219.12\| Human DNA sequence from clone DADB-122G4 on chr...	40	8.9
29	emb\|BX510315.6\| Zebrafish DNA sequence from clone CH211-59I18 in...	40	8.9
30	gb\|U23167.1\|DAU23167 Drosophila ananassae 28S ribosomal RNA gene...	40	8.9
31	gb\|AC148692.1\| Macaca mulatta Major Histocompatibility Complex B...	40	8.9
32	gb\|AC148662.1\| Macaca mulatta Major Histocompatibility Complex B...	40	8.9
33	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.9
34	gb\|AC024022.6\| Homo sapiens BAC clone RP11-63A11 from 4, complet...	40	8.9
35	dbj\|AP004368.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.9
36	dbj\|AP003683.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.9
37	emb\|BX930760.1\| Gallus gallus finished cDNA, clone ChEST376m15	40	8.9
38	gb\|AC105287.5\| Homo sapiens BAC clone RP11-313M11 from 4, comple...	40	8.9
39	dbj\|BA000025.2\| Homo sapiens genomic DNA, chromosome 6p21.3, HLA...	40	8.9
40	emb\|AJ329384.1\|HSA329384 Homo sapiens genomic sequence surroundi...	40	8.9
41	emb\|BX890602.8\| Zebrafish DNA sequence from clone DKEYP-109H9 in...	40	8.9
42	emb\|AL928830.10\| Zebrafish DNA sequence from clone CH211-119E16,...	40	8.9

>ref|XM_467637.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 5380

 Score =  476 bits (240), Expect = e-131
 Identities = 481/560 (85%), Gaps = 6/560 (1%)
 Strand = Plus / Plus

                                                                        
Query: 85   agtaacaccgatgctcagagggcattttatcaaaatcaggatcctgggtcatacacacag 144
            |||||| | |||| ||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 3919 agtaactctgatggtcagagggcattttatcaaaatcaggatcctggatcatatacacag 3978

                                                                        
Query: 145  cttgttttggaaacagcagctattgagattctctcactttctgtgccagcttctcaaata 204
            |||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct: 3979 cttgttttggaaacagcagccattgaaattctctcactttgtgtgccagcttctcaaata 4038

                                                                        
Query: 205  gtgtcctctctagttcaattaatagctcatgtacaagcaatgcttatacagtctaatact 264
            || ||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||| |
Sbjct: 4039 gtatcctctctagttcaaataatagcacatgtacaagcaatgctcatacagtcaaatagt 4098

                                                                        
Query: 265  ggtcaaggaatgtctgctggtttgggccaaaactctgggctgccaacctctccttcaggc 324
            ||||| |||||||| | |||||||||||||||||||||| |||| |   || ||||||| 
Sbjct: 4099 ggtcatggaatgtcaggtggtttgggccaaaactctggggtgccga---cttcttcaggt 4155

                                                                        
Query: 325  gcgggtgccgagtctgcaggtgctagccgagcaaacacttcagcaagtggaatcagtg-- 382
            | ||| |  ||  |||  ||||| | |||| |||||||  ||||||||||||||| ||  
Sbjct: 4156 gggggagttgaacctgttggtgccaaccgaccaaacaccacagcaagtggaatcaatgca 4215

                                                                        
Query: 383  -ctaactttgtttctagaagtggttactcttgtcagcagttgtctgttttgatgattcaa 441
             |||||||||||||||||||||| || || || || || ||||||||| |||||||||||
Sbjct: 4216 tctaactttgtttctagaagtggctattcctgccaacaattgtctgttctgatgattcaa 4275

                                                                        
Query: 442  gcatgtggcttcttgctggcacaactcccaccagaatttcacatgcaactttactcagaa 501
            || |||||  | |||||||||||||||||||||||||| ||||  |  || ||  |||||
Sbjct: 4276 gcttgtggtctgttgctggcacaactcccaccagaattccacacacttctatatgcagaa 4335

                                                                        
Query: 502  gcagctcgaatcataaaagattgtcgttggctttctgatagttcgaggcctgtgaaagag 561
            ||||| || ||||||||||||||| | |||||| |||||||||| |||||||| ||||||
Sbjct: 4336 gcagcccggatcataaaagattgttggtggcttgctgatagttcaaggcctgttaaagag 4395

                                                                        
Query: 562  cttaactcagctgttggttacgcacttctggacccaacatgggcttctcaagacagtaca 621
            ||| | || |||||||| || |||||  |||| || || |||||||||||||||| ||||
Sbjct: 4396 cttgattctgctgttgggtatgcactgttggatcctacttgggcttctcaagacaataca 4455

                                
Query: 622  tcgacagccataggtaacat 641
            || |||||||||||||||||
Sbjct: 4456 tctacagccataggtaacat 4475

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>dbj|AK121868.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103L16, full
            insert sequence
          Length = 5381

 Score =  476 bits (240), Expect = e-131
 Identities = 481/560 (85%), Gaps = 6/560 (1%)
 Strand = Plus / Plus

                                                                        
Query: 85   agtaacaccgatgctcagagggcattttatcaaaatcaggatcctgggtcatacacacag 144
            |||||| | |||| ||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 3919 agtaactctgatggtcagagggcattttatcaaaatcaggatcctggatcatatacacag 3978

                                                                        
Query: 145  cttgttttggaaacagcagctattgagattctctcactttctgtgccagcttctcaaata 204
            |||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct: 3979 cttgttttggaaacagcagccattgaaattctctcactttgtgtgccagcttctcaaata 4038

                                                                        
Query: 205  gtgtcctctctagttcaattaatagctcatgtacaagcaatgcttatacagtctaatact 264
            || ||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||| |
Sbjct: 4039 gtatcctctctagttcaaataatagcacatgtacaagcaatgctcatacagtcaaatagt 4098

                                                                        
Query: 265  ggtcaaggaatgtctgctggtttgggccaaaactctgggctgccaacctctccttcaggc 324
            ||||| |||||||| | |||||||||||||||||||||| |||| |   || ||||||| 
Sbjct: 4099 ggtcatggaatgtcaggtggtttgggccaaaactctggggtgccga---cttcttcaggt 4155

                                                                        
Query: 325  gcgggtgccgagtctgcaggtgctagccgagcaaacacttcagcaagtggaatcagtg-- 382
            | ||| |  ||  |||  ||||| | |||| |||||||  ||||||||||||||| ||  
Sbjct: 4156 gggggagttgaacctgttggtgccaaccgaccaaacaccacagcaagtggaatcaatgca 4215

                                                                        
Query: 383  -ctaactttgtttctagaagtggttactcttgtcagcagttgtctgttttgatgattcaa 441
             |||||||||||||||||||||| || || || || || ||||||||| |||||||||||
Sbjct: 4216 tctaactttgtttctagaagtggctattcctgccaacaattgtctgttctgatgattcaa 4275

                                                                        
Query: 442  gcatgtggcttcttgctggcacaactcccaccagaatttcacatgcaactttactcagaa 501
            || |||||  | |||||||||||||||||||||||||| ||||  |  || ||  |||||
Sbjct: 4276 gcttgtggtctgttgctggcacaactcccaccagaattccacacacttctatatgcagaa 4335

                                                                        
Query: 502  gcagctcgaatcataaaagattgtcgttggctttctgatagttcgaggcctgtgaaagag 561
            ||||| || ||||||||||||||| | |||||| |||||||||| |||||||| ||||||
Sbjct: 4336 gcagcccggatcataaaagattgttggtggcttgctgatagttcaaggcctgttaaagag 4395

                                                                        
Query: 562  cttaactcagctgttggttacgcacttctggacccaacatgggcttctcaagacagtaca 621
            ||| | || |||||||| || |||||  |||| || || |||||||||||||||| ||||
Sbjct: 4396 cttgattctgctgttgggtatgcactgttggatcctacttgggcttctcaagacaataca 4455

                                
Query: 622  tcgacagccataggtaacat 641
            || |||||||||||||||||
Sbjct: 4456 tctacagccataggtaacat 4475

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>dbj|AK065825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041D24, full
            insert sequence
          Length = 2844

 Score =  476 bits (240), Expect = e-131
 Identities = 481/560 (85%), Gaps = 6/560 (1%)
 Strand = Plus / Plus

                                                                        
Query: 85   agtaacaccgatgctcagagggcattttatcaaaatcaggatcctgggtcatacacacag 144
            |||||| | |||| ||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1383 agtaactctgatggtcagagggcattttatcaaaatcaggatcctggatcatatacacag 1442

                                                                        
Query: 145  cttgttttggaaacagcagctattgagattctctcactttctgtgccagcttctcaaata 204
            |||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct: 1443 cttgttttggaaacagcagccattgaaattctctcactttgtgtgccagcttctcaaata 1502

                                                                        
Query: 205  gtgtcctctctagttcaattaatagctcatgtacaagcaatgcttatacagtctaatact 264
            || ||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||| |
Sbjct: 1503 gtatcctctctagttcaaataatagcacatgtacaagcaatgctcatacagtcaaatagt 1562

                                                                        
Query: 265  ggtcaaggaatgtctgctggtttgggccaaaactctgggctgccaacctctccttcaggc 324
            ||||| |||||||| | |||||||||||||||||||||| |||| |   || ||||||| 
Sbjct: 1563 ggtcatggaatgtcaggtggtttgggccaaaactctggggtgccga---cttcttcaggt 1619

                                                                        
Query: 325  gcgggtgccgagtctgcaggtgctagccgagcaaacacttcagcaagtggaatcagtg-- 382
            | ||| |  ||  |||  ||||| | |||| |||||||  ||||||||||||||| ||  
Sbjct: 1620 gggggagttgaacctgttggtgccaaccgaccaaacaccacagcaagtggaatcaatgca 1679

                                                                        
Query: 383  -ctaactttgtttctagaagtggttactcttgtcagcagttgtctgttttgatgattcaa 441
             |||||||||||||||||||||| || || || || || ||||||||| |||||||||||
Sbjct: 1680 tctaactttgtttctagaagtggctattcctgccaacaattgtctgttctgatgattcaa 1739

                                                                        
Query: 442  gcatgtggcttcttgctggcacaactcccaccagaatttcacatgcaactttactcagaa 501
            || |||||  | |||||||||||||||||||||||||| ||||  |  || ||  |||||
Sbjct: 1740 gcttgtggtctgttgctggcacaactcccaccagaattccacacacttctatatgcagaa 1799

                                                                        
Query: 502  gcagctcgaatcataaaagattgtcgttggctttctgatagttcgaggcctgtgaaagag 561
            ||||| || ||||||||||||||| | |||||| |||||||||| |||||||| ||||||
Sbjct: 1800 gcagcccggatcataaaagattgttggtggcttgctgatagttcaaggcctgttaaagag 1859

                                                                        
Query: 562  cttaactcagctgttggttacgcacttctggacccaacatgggcttctcaagacagtaca 621
            ||| | || |||||||| || |||||  |||| || || |||||||||||||||| ||||
Sbjct: 1860 cttgattctgctgttgggtatgcactgttggatcctacttgggcttctcaagacaataca 1919

                                
Query: 622  tcgacagccataggtaacat 641
            || |||||||||||||||||
Sbjct: 1920 tctacagccataggtaacat 1939

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  468 bits (236), Expect = e-128
 Identities = 477/556 (85%), Gaps = 6/556 (1%)
 Strand = Plus / Minus

                                                                            
Query: 85       agtaacaccgatgctcagagggcattttatcaaaatcaggatcctgggtcatacacacag 144
                |||||| | |||| ||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 30562896 agtaactctgatggtcagagggcattttatcaaaatcaggatcctggatcatatacacag 30562837

                                                                            
Query: 145      cttgttttggaaacagcagctattgagattctctcactttctgtgccagcttctcaaata 204
                |||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct: 30562836 cttgttttggaaacagcagccattgaaattctctcactttgtgtgccagcttctcaaata 30562777

                                                                            
Query: 205      gtgtcctctctagttcaattaatagctcatgtacaagcaatgcttatacagtctaatact 264
                || ||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||| |
Sbjct: 30562776 gtatcctctctagttcaaataatagcacatgtacaagcaatgctcatacagtcaaatagt 30562717

                                                                            
Query: 265      ggtcaaggaatgtctgctggtttgggccaaaactctgggctgccaacctctccttcaggc 324
                ||||| |||||||| | |||||||||||||||||||||| |||| |   || ||||||| 
Sbjct: 30562716 ggtcatggaatgtcaggtggtttgggccaaaactctggggtgccga---cttcttcaggt 30562660

                                                                            
Query: 325      gcgggtgccgagtctgcaggtgctagccgagcaaacacttcagcaagtggaatcagtg-- 382
                | ||| |  ||  |||  ||||| | |||| |||||||  ||||||||||||||| ||  
Sbjct: 30562659 gggggagttgaacctgttggtgccaaccgaccaaacaccacagcaagtggaatcaatgca 30562600

                                                                            
Query: 383      -ctaactttgtttctagaagtggttactcttgtcagcagttgtctgttttgatgattcaa 441
                 |||||||||||||||||||||| || || || || || ||||||||| |||||||||||
Sbjct: 30562599 tctaactttgtttctagaagtggctattcctgccaacaattgtctgttctgatgattcaa 30562540

                                                                            
Query: 442      gcatgtggcttcttgctggcacaactcccaccagaatttcacatgcaactttactcagaa 501
                || |||||  | |||||||||||||||||||||||||| ||||  |  || ||  |||||
Sbjct: 30562539 gcttgtggtctgttgctggcacaactcccaccagaattccacacacttctatatgcagaa 30562480

                                                                            
Query: 502      gcagctcgaatcataaaagattgtcgttggctttctgatagttcgaggcctgtgaaagag 561
                ||||| || ||||||||||||||| | |||||| |||||||||| |||||||| ||||||
Sbjct: 30562479 gcagcccggatcataaaagattgttggtggcttgctgatagttcaaggcctgttaaagag 30562420

                                                                            
Query: 562      cttaactcagctgttggttacgcacttctggacccaacatgggcttctcaagacagtaca 621
                ||| | || |||||||| || |||||  |||| || || |||||||||||||||| ||||
Sbjct: 30562419 cttgattctgctgttgggtatgcactgttggatcctacttgggcttctcaagacaataca 30562360

                                
Query: 622      tcgacagccataggta 637
                || |||||||||||||
Sbjct: 30562359 tctacagccataggta 30562344

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>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0643A10
          Length = 187931

 Score =  468 bits (236), Expect = e-128
 Identities = 477/556 (85%), Gaps = 6/556 (1%)
 Strand = Plus / Minus

                                                                         
Query: 85    agtaacaccgatgctcagagggcattttatcaaaatcaggatcctgggtcatacacacag 144
             |||||| | |||| ||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 74904 agtaactctgatggtcagagggcattttatcaaaatcaggatcctggatcatatacacag 74845

                                                                         
Query: 145   cttgttttggaaacagcagctattgagattctctcactttctgtgccagcttctcaaata 204
             |||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct: 74844 cttgttttggaaacagcagccattgaaattctctcactttgtgtgccagcttctcaaata 74785

                                                                         
Query: 205   gtgtcctctctagttcaattaatagctcatgtacaagcaatgcttatacagtctaatact 264
             || ||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||| |
Sbjct: 74784 gtatcctctctagttcaaataatagcacatgtacaagcaatgctcatacagtcaaatagt 74725

                                                                         
Query: 265   ggtcaaggaatgtctgctggtttgggccaaaactctgggctgccaacctctccttcaggc 324
             ||||| |||||||| | |||||||||||||||||||||| |||| |   || ||||||| 
Sbjct: 74724 ggtcatggaatgtcaggtggtttgggccaaaactctggggtgccga---cttcttcaggt 74668

                                                                         
Query: 325   gcgggtgccgagtctgcaggtgctagccgagcaaacacttcagcaagtggaatcagtg-- 382
             | ||| |  ||  |||  ||||| | |||| |||||||  ||||||||||||||| ||  
Sbjct: 74667 gggggagttgaacctgttggtgccaaccgaccaaacaccacagcaagtggaatcaatgca 74608

                                                                         
Query: 383   -ctaactttgtttctagaagtggttactcttgtcagcagttgtctgttttgatgattcaa 441
              |||||||||||||||||||||| || || || || || ||||||||| |||||||||||
Sbjct: 74607 tctaactttgtttctagaagtggctattcctgccaacaattgtctgttctgatgattcaa 74548

                                                                         
Query: 442   gcatgtggcttcttgctggcacaactcccaccagaatttcacatgcaactttactcagaa 501
             || |||||  | |||||||||||||||||||||||||| ||||  |  || ||  |||||
Sbjct: 74547 gcttgtggtctgttgctggcacaactcccaccagaattccacacacttctatatgcagaa 74488

                                                                         
Query: 502   gcagctcgaatcataaaagattgtcgttggctttctgatagttcgaggcctgtgaaagag 561
             ||||| || ||||||||||||||| | |||||| |||||||||| |||||||| ||||||
Sbjct: 74487 gcagcccggatcataaaagattgttggtggcttgctgatagttcaaggcctgttaaagag 74428

                                                                         
Query: 562   cttaactcagctgttggttacgcacttctggacccaacatgggcttctcaagacagtaca 621
             ||| | || |||||||| || |||||  |||| || || |||||||||||||||| ||||
Sbjct: 74427 cttgattctgctgttgggtatgcactgttggatcctacttgggcttctcaagacaataca 74368

                             
Query: 622   tcgacagccataggta 637
             || |||||||||||||
Sbjct: 74367 tctacagccataggta 74352

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>ref|NM_152596.2| Homo sapiens exonuclease 3'-5' domain-like 1 (EXDL1), mRNA
          Length = 2949

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 520 gattgtcgttggctttctgat 540
           |||||||||||||||||||||
Sbjct: 666 gattgtcgttggctttctgat 686

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>ref|XM_523055.1| PREDICTED: Pan troglodytes LOC467661 (LOC467661), mRNA
          Length = 1551

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 520 gattgtcgttggctttctgat 540
           |||||||||||||||||||||
Sbjct: 481 gattgtcgttggctttctgat 501

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>ref|XM_869892.1| PREDICTED: Bos taurus similar to CG4051-PA (LOC617602), mRNA
          Length = 1518

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 520 gattgtcgttggctttctgat 540
           |||||||||||||||||||||
Sbjct: 451 gattgtcgttggctttctgat 471

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>ref|XM_535437.2| PREDICTED: Canis familiaris similar to CG4051-PA (LOC478263), mRNA
          Length = 1861

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 520 gattgtcgttggctttctgat 540
           |||||||||||||||||||||
Sbjct: 794 gattgtcgttggctttctgat 814

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>gb|AC008501.5| Homo sapiens chromosome 5 clone CTC-439N6, complete sequence
          Length = 176903

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 473   cagaatttcacatgcaacttt 493
             |||||||||||||||||||||
Sbjct: 93698 cagaatttcacatgcaacttt 93678

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>gb|AC008589.6| Homo sapiens chromosome 5 clone CTC-574I1, complete sequence
          Length = 121272

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 473    cagaatttcacatgcaacttt 493
              |||||||||||||||||||||
Sbjct: 114505 cagaatttcacatgcaacttt 114525

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>gb|AC022408.6| Homo sapiens chromosome 15 clone RP11-118J16 map 15q15, complete sequence
          Length = 150266

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 520    gattgtcgttggctttctgat 540
              |||||||||||||||||||||
Sbjct: 135092 gattgtcgttggctttctgat 135072

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>gb|AC008927.6| Homo sapiens chromosome 5 clone CTD-2287O23, complete sequence
          Length = 165604

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 473    cagaatttcacatgcaacttt 493
              |||||||||||||||||||||
Sbjct: 120927 cagaatttcacatgcaacttt 120947

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>gb|AC012652.7| Homo sapiens chromosome 15 clone RP11-46M12 map 15q15, complete
             sequence
          Length = 169825

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 520   gattgtcgttggctttctgat 540
             |||||||||||||||||||||
Sbjct: 34481 gattgtcgttggctttctgat 34461

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>gb|BC030628.2| Homo sapiens exonuclease 3'-5' domain-like 1, mRNA (cDNA clone
           MGC:33637 IMAGE:4827307), complete cds
          Length = 2949

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 520 gattgtcgttggctttctgat 540
           |||||||||||||||||||||
Sbjct: 666 gattgtcgttggctttctgat 686

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>gb|AC152957.1| Mus musculus 6 BAC RP23-353I5 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 203225

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 481   cacatgcaactttactcaga 500
             ||||||||||||||||||||
Sbjct: 46245 cacatgcaactttactcaga 46264

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>gb|AF134726.1| Homo sapiens BAC clone 215O12 NG35, NG36, G9A, NG22, G9, HSP70-2,
             HSP70-1, HSP70-HOM, snRNP, G7A, NG37, NG23, and MutSH5
             genes, complete cds
          Length = 180283

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    caaatttcagcaagcctcat 60
             ||||||||||||||||||||
Sbjct: 18660 caaatttcagcaagcctcat 18641

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>gb|AC135110.3| Mus musculus BAC clone RP23-392G14 from chromosome 18, complete
             sequence
          Length = 182942

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   cctctctagttcaattaata 228
             ||||||||||||||||||||
Sbjct: 66403 cctctctagttcaattaata 66384

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>emb|AL844853.23| Human DNA sequence from clone DAQB-331I12 on chromosome 6 Contains the
             NEU1 gene for sialidase 1 (lysosomal sialidase), the
             C6orf29 gene for chromosome 6 open reading frame 29, the
             BAT8 gene for HLA-B associated transcript 8, a novel
             transcript DAQB-331I12.5, the ZBTB12 gene (previously
             C6orf46) for zinc finger and BTB domain containing 12, the
             C2 gene for complement component 2, the Bf gene for
             B-factor, properdin, the RDBP gene for RD RNA binding
             protein, the SKIV2L gene for superkiller viralicidic
             activity 2-like (S. cerevisiae), the DOM3Z gene for dom-3
             homolog Z (C. elegans), the STK19 gene for
             serine/threonine kinase 19, the 5' end of the C4A gene for
             complement component 4A and 8 CpG isalnds, complete
             sequence
          Length = 153464

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    caaatttcagcaagcctcat 60
             ||||||||||||||||||||
Sbjct: 53492 caaatttcagcaagcctcat 53511

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>emb|AL671762.10| Human DNA sequence from clone XXbac-254B15 on chromosome 6 contains the
              5' end of the VARS2 gene for valyl-tRNA synthetase 2, the
              gene for  chromosome 6 open reading frame 28, the HSPA1L
              gene for heat shock 70kDa protein 1-like, the HSPA1A gene
              for heat shock 70kDa protein 1A, the HSPA1B gene for heat
              shock 70kDa protein 1B, the gene for chromosome 6 open
              reading frame 48, the NEU1 gene for sialidase 1 (lysosomal
              sialidase), the gene forchromosome 6 open reading frame 29,
              the gene for  HLA-B associated transcript 8, the gene for
              chromosome 6 open reading frame 46 and eight CpG islands,
              complete sequence
          Length = 113582

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     caaatttcagcaagcctcat 60
              ||||||||||||||||||||
Sbjct: 107214 caaatttcagcaagcctcat 107233

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>emb|AL662834.8| Human DNA sequence from clone XXbac-40G17 on chromosome 6 contains the
              MSH5 gene for mutS homolog 5 (e. coli), the gene for NG23
              protein, the gene for chromosome 6 open reading frame 27,
              the VARS2 gene for valyl-tRNA synthetase 2, the gene for
              chromosome 6 open reading frame 28, the HSPA1L gene for
              heat shock 70kDa protein 1-like, the HSPA1A gene for heat
              shock 70kDa protein 1A, the HSPA1B gene for heat shock
              70kDa protein 1B, the gene for chromosome 6 open reading
              frame 48, the NEU1 gene for sialidase 1 (lysosomal
              sialidase), the gene for chromosome 6 open reading frame
              29, the BAT8 gene for HLA-B associated transcript 8, the
              gene for chromosome 6 open reading frame 46 and nine CpG
              islands, complete sequence
          Length = 179894

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     caaatttcagcaagcctcat 60
              ||||||||||||||||||||
Sbjct: 163425 caaatttcagcaagcctcat 163444

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>emb|AL160269.14| Human DNA sequence from clone RP11-240L7 on chromosome 9 Contains the
             3' end of a gene for a novel protein similar to a zinc
             finger protein, the gene for a nucleotide-sugar
             transporter (SQV7L) the HSD17B3 gene for hydroxysteroid
             (17-beta) dehydrogenase 3, 2 novel genes and two CpG
             islands, complete sequence
          Length = 169646

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 298   tctgggctgccaacctctccttca 321
             |||||||| |||||||||||||||
Sbjct: 93959 tctgggctcccaacctctccttca 93982

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>gb|AY341031.1| Homo sapiens hydroxysteroid (17-beta) dehydrogenase 3 (HSD17B3) gene,
            complete cds
          Length = 69749

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 298  tctgggctgccaacctctccttca 321
            |||||||| |||||||||||||||
Sbjct: 9037 tctgggctcccaacctctccttca 9060

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>emb|AJ719468.1| Gallus gallus mRNA for hypothetical protein, clone 2j15
          Length = 1929

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 353 gagcaaacacttcagcaagt 372
           ||||||||||||||||||||
Sbjct: 336 gagcaaacacttcagcaagt 317

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>emb|CR788238.10| Human DNA sequence from clone DAMC-45E14 on chromosome 6, complete
             sequence
          Length = 108340

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    caaatttcagcaagcctcat 60
             ||||||||||||||||||||
Sbjct: 72414 caaatttcagcaagcctcat 72395

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>emb|CR759784.6| Human DNA sequence from clone DAMC-303C24 on chromosome 6, complete
             sequence
          Length = 63128

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    caaatttcagcaagcctcat 60
             ||||||||||||||||||||
Sbjct: 58307 caaatttcagcaagcctcat 58326

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>ref|NM_001006485.1| Gallus gallus vaccinia related kinase 1 (VRK1), mRNA
          Length = 1929

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 353 gagcaaacacttcagcaagt 372
           ||||||||||||||||||||
Sbjct: 336 gagcaaacacttcagcaagt 317

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>emb|CR388219.12| Human DNA sequence from clone DADB-122G4 on chromosome 6, complete
             sequence
          Length = 71590

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    caaatttcagcaagcctcat 60
             ||||||||||||||||||||
Sbjct: 14082 caaatttcagcaagcctcat 14101

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>emb|BX510315.6| Zebrafish DNA sequence from clone CH211-59I18 in linkage group 24,
              complete sequence
          Length = 202562

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 502    gcagctcgaatcataaaaga 521
              ||||||||||||||||||||
Sbjct: 140286 gcagctcgaatcataaaaga 140305

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>gb|U23167.1|DAU23167 Drosophila ananassae 28S ribosomal RNA gene, partial sequence, and
           R1 retrotransposable element reverse transcriptase gene,
           partial cds
          Length = 2257

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 73  gctggtggaaatagtaacaccgat 96
           |||||||||||| |||||||||||
Sbjct: 205 gctggtggaaatggtaacaccgat 182

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>gb|AC148692.1| Macaca mulatta Major Histocompatibility Complex BAC MMU235E11, complete
             sequence
          Length = 159875

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    caaatttcagcaagcctcat 60
             ||||||||||||||||||||
Sbjct: 24935 caaatttcagcaagcctcat 24954

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>gb|AC148662.1| Macaca mulatta Major Histocompatibility Complex BAC MMU009PO6, complete
              sequence
          Length = 191271

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     caaatttcagcaagcctcat 60
              ||||||||||||||||||||
Sbjct: 155320 caaatttcagcaagcctcat 155339

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 132      gtcatacacacagcttgttttgga 155
                |||||||||||| |||||||||||
Sbjct: 42037818 gtcatacacacatcttgttttgga 42037841

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>gb|AC024022.6| Homo sapiens BAC clone RP11-63A11 from 4, complete sequence
          Length = 186755

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   gcttctcaaatagtgtcctc 212
             ||||||||||||||||||||
Sbjct: 93721 gcttctcaaatagtgtcctc 93702

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>dbj|AP004368.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1139B11
          Length = 136548

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 132   gtcatacacacagcttgttttgga 155
             |||||||||||| |||||||||||
Sbjct: 24623 gtcatacacacatcttgttttgga 24646

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>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0431G06
          Length = 140466

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 132    gtcatacacacagcttgttttgga 155
              |||||||||||| |||||||||||
Sbjct: 139895 gtcatacacacatcttgttttgga 139918

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>emb|BX930760.1| Gallus gallus finished cDNA, clone ChEST376m15
          Length = 531

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 353 gagcaaacacttcagcaagt 372
           ||||||||||||||||||||
Sbjct: 127 gagcaaacacttcagcaagt 108

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>gb|AC105287.5| Homo sapiens BAC clone RP11-313M11 from 4, complete sequence
          Length = 105001

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    caaatttcagcaagcctcat 60
             ||||||||||||||||||||
Sbjct: 18843 caaatttcagcaagcctcat 18862

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>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    caaatttcagcaagcctcat 60
             ||||||||||||||||||||
Sbjct: 44460 caaatttcagcaagcctcat 44441

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>emb|AJ329384.1|HSA329384 Homo sapiens genomic sequence surrounding NotI site, clone NR1-DO7R
          Length = 762

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 103 agggcattttatcaaaatca 122
           ||||||||||||||||||||
Sbjct: 558 agggcattttatcaaaatca 577

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>emb|BX890602.8| Zebrafish DNA sequence from clone DKEYP-109H9 in linkage group 18,
             complete sequence
          Length = 191296

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   tgttttggaaacagcagcta 166
             ||||||||||||||||||||
Sbjct: 23705 tgttttggaaacagcagcta 23686

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>emb|AL928830.10| Zebrafish DNA sequence from clone CH211-119E16, complete sequence
          Length = 182614

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 502    gcagctcgaatcataaaaga 521
              ||||||||||||||||||||
Sbjct: 122726 gcagctcgaatcataaaaga 122745


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,881,600
Number of Sequences: 3902068
Number of extensions: 5881600
Number of successful extensions: 101446
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101327
Number of HSP's gapped (non-prelim): 114
length of query: 649
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 626
effective length of database: 17,143,297,704
effective search space: 10731704362704
effective search space used: 10731704362704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result