ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd17d24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AMPN_HAECO (Q10737) Aminopeptidase N (EC 3.4.11.2) (Microsomal a... 31 2.5
2PER1_VOLCA (P81131) Perphorin-1 precursor (Perphorin I) 30 3.3

>AMPN_HAECO (Q10737) Aminopeptidase N (EC 3.4.11.2) (Microsomal aminopeptidase)|
           (Membrane glycoprotein H11)
          Length = 971

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
 Frame = +1

Query: 67  FSPXTNGRLSNDAWHHADADSVEYFNLADLWEQYYEWSAYGAGATVQLQGGDKVVQYY-- 240
           +SP T   + +DA+  A  D++EY  + +L   Y E         + + G   +++Y+  
Sbjct: 649 YSPRTRNAIISDAFAAAATDAIEYETVFELL-NYAEKETEYLPLEIAMSGISSILKYFGT 707

Query: 241 VPYLSGIQLYTNKVLNASRSFGEDYAMDFWSDDDDNEKM 357
            P     Q Y   ++N  +   E  ++DF +++  N+K+
Sbjct: 708 EPEAKPAQTY---MMNILKPMYEKSSIDFIANNYRNDKL 743



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>PER1_VOLCA (P81131) Perphorin-1 precursor (Perphorin I)|
          Length = 512

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
 Frame = -3

Query: 218 PPCSCTVAPAPYALHS*YCSHRSA------RLKYSTLSASAWCHASLDSRPLVLGENVRV 57
           P C C  +P+PY+L     S+R+       R+   + SA+ +C    D + + +  N   
Sbjct: 29  PYCQCIKSPSPYSLEPVVKSNRTGQYCFTLRVTKPSPSATGYCATKADIKKIEINVNQVC 88

Query: 56  DRRGGAVEEAL 24
           D  G  V   L
Sbjct: 89  DVFGNVVNATL 99


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,681,510
Number of Sequences: 219361
Number of extensions: 1358813
Number of successful extensions: 3987
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3985
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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