ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd17d24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197147.1| Oryza sativa (japonica cultivar-group) unknown ... 291 1e-75
2dbj|AK106067.1| Oryza sativa (japonica cultivar-group) cDNA clon... 291 1e-75
3dbj|AK071373.1| Oryza sativa (japonica cultivar-group) cDNA clon... 291 1e-75
4gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 gen... 174 2e-40
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 174 2e-40
7emb|AJ292770.1|ZMA292770 Zea mays mRNA for putative fatty acid l... 46 0.12
8gb|AY109713.2| Zea mays CL1191_1 mRNA sequence 46 0.12
9gb|AC145571.3| Mus musculus BAC clone RP24-450H18 from chromosom... 44 0.47
10gb|AC112173.3| Homo sapiens chromosome 5 clone CTD-2275D10, comp... 44 0.47
11gb|AC069015.8|AC069015 Mus musculus BAC MGS3-174O22 (Genome Sys... 44 0.47
12gb|AC006508.2|AC006508 Mus musculus Yp BAC GSMB-187H15 (Genome S... 44 0.47
13gb|AC148319.2| Mus musculus BAC clone RP24-540G19 from Y, comple... 44 0.47
14gb|BT016112.1| Drosophila melanogaster LD13852 full insert cDNA 42 1.9
15emb|AJ007518.1|DMAJ7518 Drosophila melanogaster mRNA for transcr... 42 1.9
16ref|NM_165916.1| Drosophila melanogaster Sin3A CG8815-RC, transc... 42 1.9
17ref|NM_165915.1| Drosophila melanogaster Sin3A CG8815-RB, transc... 42 1.9
18ref|NM_136955.2| Drosophila melanogaster Sin3A CG8815-RA, transc... 42 1.9
19gb|AY052128.1| Drosophila melanogaster SD07795 full length cDNA 42 1.9
20gb|AE003821.4| Drosophila melanogaster chromosome 2R, section 29... 42 1.9
21gb|AC007356.8|AC007356 Drosophila melanogaster, chromosome 2R, r... 42 1.9
22gb|AC136499.2| Homo sapiens chromosome 19 clone RP11-240C14, com... 42 1.9
23gb|AF024603.1|AF024603 Drosophila melanogaster transcriptional c... 42 1.9
24ref|NM_188291.1| Oryza sativa (japonica cultivar-group), predic... 40 7.3
25gb|AY780653.1| Pediastrum duplex strain SAG 28.83 internal trans... 40 7.3
26gb|DQ232587.1| Rhodobacter sphaeroides 2.4.1 plasmid E, partial ... 40 7.3
27gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 7.3
28gb|AC136525.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
29gb|AC108802.15| Mus musculus chromosome 12, clone RP23-220J1, co... 40 7.3
30gb|AC130724.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
31gb|AY577757.1| Pediastrum duplex strain SF0202NY 5.8S ribosomal ... 40 7.3
32gb|AY577742.1| Pediastrum duplex strain EL0201CT 5.8S ribosomal ... 40 7.3
33gb|AY577728.1| Pediastrum sp. UTEX LB144 5.8S ribosomal RNA gene... 40 7.3
34emb|CR380838.2| Pan troglodytes chromosome X BAC RP43-021E02, co... 40 7.3
35gb|AC115760.9| Mus musculus chromosome 14, clone RP23-62M14, com... 40 7.3
36ref|XM_735767.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 7.3
37emb|AL603628.4| Human DNA sequence from clone RP11-347E16 on chr... 40 7.3
38emb|AL590785.7| Human DNA sequence from clone RP11-321C1 on chro... 40 7.3
39emb|AL513534.17| Human DNA sequence from clone RP11-119F7 on chr... 40 7.3
40emb|AL031000.1|HS795G23 Human DNA sequence from clone RP4-795G23... 40 7.3
41gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 7.3
42gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 7.3
43dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
44dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
45dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
46dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
47dbj|AP004791.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
48dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
49dbj|AK101377.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
50dbj|AK069537.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
51emb|CT009504.11| Mouse DNA sequence from clone RP23-149M9 on chr... 40 7.3 
>ref|NM_197147.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0041P03.5), mRNA
          Length = 1301

 Score =  291 bits (147), Expect = 1e-75
 Identities = 252/287 (87%)
 Strand = Plus / Plus

                                                                       
Query: 106 tggcaccacgccgacgccgacagcgtcgagtacttcaacctcgccgacctgtgggagcag 165
           ||||||||||||||    |||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 145 tggcaccacgccgagatggacagcgtcgagtacttcaacctcgcggacctatgggagcag 204

                                                                       
Query: 166 tactacgagtggagcgcgtacggcgccggagccaccgtgcagctgcaaggaggggacaag 225
           ||||| ||||||||||||||||| || ||| | || ||||||||| | |||||||| |  
Sbjct: 205 tactatgagtggagcgcgtacggggctggaactacggtgcagctgtatggaggggaaaga 264

                                                                       
Query: 226 gtagttcagtactacgtcccgtacttgtcagggatacagctatacaccaacaaagtcctg 285
           ||||| || ||||| || || ||||||||||||||||||||||| |||||||||| || |
Sbjct: 265 gtagtccaatactatgttccctacttgtcagggatacagctatataccaacaaagcccag 324

                                                                       
Query: 286 aatgcatccaggagttttggcgaggattatgccatggacttctggagcgatgatgacgac 345
           | |||||||||||||||||| || ||| ||| ||||||||  |||||||||||||| |||
Sbjct: 325 actgcatccaggagttttggtgaagataatggcatggactattggagcgatgatgaggac 384

                                                          
Query: 346 aatgagaagatgtcaagatcctggagttcaacatctgacgactcatt 392
           |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 385 aatgagaagatgtcaagatcttggagttcaacatctgaagactcatt 431



 Score =  123 bits (62), Expect = 6e-25
 Identities = 90/98 (91%), Gaps = 1/98 (1%)
 Strand = Plus / Plus

                                                                       
Query: 437 tgtattttgagttctttgaagtttgctctccttatggaaggattcccactcatggataag 496
           |||||||||||||||| || |||||||||||||||||||||||| |||||||| || |||
Sbjct: 479 tgtattttgagttcttcgaggtttgctctccttatggaaggatt-ccactcattgacaag 537

                                                 
Query: 497 gtatatgaactatcccagggctttcctgggttgacatc 534
           || ||||||||||||||| ||| |||||||||||||||
Sbjct: 538 gtgtatgaactatcccagagctatcctgggttgacatc 575



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                       
Query: 15  tccaatctgcagcgcttcctcgactgcaccaccccggcggtcgacacgcacattctcccc 74
           ||||| |||||| ||||| | |||||||||||||| || |||||||||||| | ||||||
Sbjct: 55  tccaacctgcagtgcttcttggactgcaccacccccgccgtcgacacgcacctcctcccc 114

              
Query: 75  aag 77
           |||
Sbjct: 115 aag 117
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>dbj|AK106067.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H01, full
           insert sequence
          Length = 1566

 Score =  291 bits (147), Expect = 1e-75
 Identities = 252/287 (87%)
 Strand = Plus / Plus

                                                                       
Query: 106 tggcaccacgccgacgccgacagcgtcgagtacttcaacctcgccgacctgtgggagcag 165
           ||||||||||||||    |||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 410 tggcaccacgccgagatggacagcgtcgagtacttcaacctcgcggacctatgggagcag 469

                                                                       
Query: 166 tactacgagtggagcgcgtacggcgccggagccaccgtgcagctgcaaggaggggacaag 225
           ||||| ||||||||||||||||| || ||| | || ||||||||| | |||||||| |  
Sbjct: 470 tactatgagtggagcgcgtacggggctggaactacggtgcagctgtatggaggggaaaga 529

                                                                       
Query: 226 gtagttcagtactacgtcccgtacttgtcagggatacagctatacaccaacaaagtcctg 285
           ||||| || ||||| || || ||||||||||||||||||||||| |||||||||| || |
Sbjct: 530 gtagtccaatactatgttccctacttgtcagggatacagctatataccaacaaagcccag 589

                                                                       
Query: 286 aatgcatccaggagttttggcgaggattatgccatggacttctggagcgatgatgacgac 345
           | |||||||||||||||||| || ||| ||| ||||||||  |||||||||||||| |||
Sbjct: 590 actgcatccaggagttttggtgaagataatggcatggactattggagcgatgatgaggac 649

                                                          
Query: 346 aatgagaagatgtcaagatcctggagttcaacatctgacgactcatt 392
           |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 650 aatgagaagatgtcaagatcttggagttcaacatctgaagactcatt 696



 Score =  123 bits (62), Expect = 6e-25
 Identities = 90/98 (91%), Gaps = 1/98 (1%)
 Strand = Plus / Plus

                                                                       
Query: 437 tgtattttgagttctttgaagtttgctctccttatggaaggattcccactcatggataag 496
           |||||||||||||||| || |||||||||||||||||||||||| |||||||| || |||
Sbjct: 744 tgtattttgagttcttcgaggtttgctctccttatggaaggatt-ccactcattgacaag 802

                                                 
Query: 497 gtatatgaactatcccagggctttcctgggttgacatc 534
           || ||||||||||||||| ||| |||||||||||||||
Sbjct: 803 gtgtatgaactatcccagagctatcctgggttgacatc 840



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                       
Query: 15  tccaatctgcagcgcttcctcgactgcaccaccccggcggtcgacacgcacattctcccc 74
           ||||| |||||| ||||| | |||||||||||||| || |||||||||||| | ||||||
Sbjct: 320 tccaacctgcagtgcttcttggactgcaccacccccgccgtcgacacgcacctcctcccc 379

              
Query: 75  aag 77
           |||
Sbjct: 380 aag 382
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>dbj|AK071373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097P16, full
           insert sequence
          Length = 1560

 Score =  291 bits (147), Expect = 1e-75
 Identities = 252/287 (87%)
 Strand = Plus / Plus

                                                                       
Query: 106 tggcaccacgccgacgccgacagcgtcgagtacttcaacctcgccgacctgtgggagcag 165
           ||||||||||||||    |||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 404 tggcaccacgccgagatggacagcgtcgagtacttcaacctcgcggacctatgggagcag 463

                                                                       
Query: 166 tactacgagtggagcgcgtacggcgccggagccaccgtgcagctgcaaggaggggacaag 225
           ||||| ||||||||||||||||| || ||| | || ||||||||| | |||||||| |  
Sbjct: 464 tactatgagtggagcgcgtacggggctggaactacggtgcagctgtatggaggggaaaga 523

                                                                       
Query: 226 gtagttcagtactacgtcccgtacttgtcagggatacagctatacaccaacaaagtcctg 285
           ||||| || ||||| || || ||||||||||||||||||||||| |||||||||| || |
Sbjct: 524 gtagtccaatactatgttccctacttgtcagggatacagctatataccaacaaagcccag 583

                                                                       
Query: 286 aatgcatccaggagttttggcgaggattatgccatggacttctggagcgatgatgacgac 345
           | |||||||||||||||||| || ||| ||| ||||||||  |||||||||||||| |||
Sbjct: 584 actgcatccaggagttttggtgaagataatggcatggactattggagcgatgatgaggac 643

                                                          
Query: 346 aatgagaagatgtcaagatcctggagttcaacatctgacgactcatt 392
           |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 644 aatgagaagatgtcaagatcttggagttcaacatctgaagactcatt 690



 Score =  123 bits (62), Expect = 6e-25
 Identities = 90/98 (91%), Gaps = 1/98 (1%)
 Strand = Plus / Plus

                                                                       
Query: 437 tgtattttgagttctttgaagtttgctctccttatggaaggattcccactcatggataag 496
           |||||||||||||||| || |||||||||||||||||||||||| |||||||| || |||
Sbjct: 738 tgtattttgagttcttcgaggtttgctctccttatggaaggatt-ccactcattgacaag 796

                                                 
Query: 497 gtatatgaactatcccagggctttcctgggttgacatc 534
           || ||||||||||||||| ||| |||||||||||||||
Sbjct: 797 gtgtatgaactatcccagagctatcctgggttgacatc 834



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                       
Query: 15  tccaatctgcagcgcttcctcgactgcaccaccccggcggtcgacacgcacattctcccc 74
           ||||| |||||| ||||| | |||||||||||||| || |||||||||||| | ||||||
Sbjct: 314 tccaacctgcagtgcttcttggactgcaccacccccgccgtcgacacgcacctcctcccc 373

              
Query: 75  aag 77
           |||
Sbjct: 374 aag 376
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>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete
              sequence
          Length = 139614

 Score =  174 bits (88), Expect = 2e-40
 Identities = 166/192 (86%)
 Strand = Plus / Plus

                                                                          
Query: 106    tggcaccacgccgacgccgacagcgtcgagtacttcaacctcgccgacctgtgggagcag 165
              ||||||||||||||    |||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 109237 tggcaccacgccgagatggacagcgtcgagtacttcaacctcgcggacctatgggagcag 109296

                                                                          
Query: 166    tactacgagtggagcgcgtacggcgccggagccaccgtgcagctgcaaggaggggacaag 225
              ||||| ||||||||||||||||| || ||| | || ||||||||| | |||||||| |  
Sbjct: 109297 tactatgagtggagcgcgtacggggctggaactacggtgcagctgtatggaggggaaaga 109356

                                                                          
Query: 226    gtagttcagtactacgtcccgtacttgtcagggatacagctatacaccaacaaagtcctg 285
              ||||| || ||||| || || ||||||||||||||||||||||| |||||||||| || |
Sbjct: 109357 gtagtccaatactatgttccctacttgtcagggatacagctatataccaacaaagcccag 109416

                          
Query: 286    aatgcatccagg 297
              | ||||||||||
Sbjct: 109417 actgcatccagg 109428



 Score =  123 bits (62), Expect = 6e-25
 Identities = 89/98 (90%)
 Strand = Plus / Plus

                                                                          
Query: 295    aggagttttggcgaggattatgccatggacttctggagcgatgatgacgacaatgagaag 354
              ||||||||||| || ||| ||| ||||||||  |||||||||||||| ||||||||||||
Sbjct: 109525 aggagttttggtgaagataatggcatggactattggagcgatgatgaggacaatgagaag 109584

                                                    
Query: 355    atgtcaagatcctggagttcaacatctgacgactcatt 392
              ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 109585 atgtcaagatcttggagttcaacatctgaagactcatt 109622



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 58/63 (92%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                          
Query: 437    tgtattttgagttctttgaagtttgctctccttatggaaggattcccactcatggataag 496
              |||||||||||||||| || |||||||||||||||||||||||| |||||||| || |||
Sbjct: 109670 tgtattttgagttcttcgaggtttgctctccttatggaaggatt-ccactcattgacaag 109728

                 
Query: 497    gta 499
              |||
Sbjct: 109729 gta 109731



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                          
Query: 15     tccaatctgcagcgcttcctcgactgcaccaccccggcggtcgacacgcacattctcccc 74
              ||||| |||||| ||||| | |||||||||||||| || |||||||||||| | ||||||
Sbjct: 108584 tccaacctgcagtgcttcttggactgcaccacccccgccgtcgacacgcacctcctcccc 108643

                 
Query: 75     aag 77
              |||
Sbjct: 108644 aag 108646



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                      
Query: 495    aggtatatgaactatcccagggctttcctgggttgacatc 534
              |||| ||||||||||||||| ||| |||||||||||||||
Sbjct: 109804 aggtgtatgaactatcccagagctatcctgggttgacatc 109843
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  174 bits (88), Expect = 2e-40
 Identities = 166/192 (86%)
 Strand = Plus / Minus

                                                                            
Query: 106      tggcaccacgccgacgccgacagcgtcgagtacttcaacctcgccgacctgtgggagcag 165
                ||||||||||||||    |||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 18241933 tggcaccacgccgagatggacagcgtcgagtacttcaacctcgcggacctatgggagcag 18241874

                                                                            
Query: 166      tactacgagtggagcgcgtacggcgccggagccaccgtgcagctgcaaggaggggacaag 225
                ||||| ||||||||||||||||| || ||| | || ||||||||| | |||||||| |  
Sbjct: 18241873 tactatgagtggagcgcgtacggggctggaactacggtgcagctgtatggaggggaaaga 18241814

                                                                            
Query: 226      gtagttcagtactacgtcccgtacttgtcagggatacagctatacaccaacaaagtcctg 285
                ||||| || ||||| || || ||||||||||||||||||||||| |||||||||| || |
Sbjct: 18241813 gtagtccaatactatgttccctacttgtcagggatacagctatataccaacaaagcccag 18241754

                            
Query: 286      aatgcatccagg 297
                | ||||||||||
Sbjct: 18241753 actgcatccagg 18241742



 Score =  123 bits (62), Expect = 6e-25
 Identities = 89/98 (90%)
 Strand = Plus / Minus

                                                                            
Query: 295      aggagttttggcgaggattatgccatggacttctggagcgatgatgacgacaatgagaag 354
                ||||||||||| || ||| ||| ||||||||  |||||||||||||| ||||||||||||
Sbjct: 18241645 aggagttttggtgaagataatggcatggactattggagcgatgatgaggacaatgagaag 18241586

                                                      
Query: 355      atgtcaagatcctggagttcaacatctgacgactcatt 392
                ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 18241585 atgtcaagatcttggagttcaacatctgaagactcatt 18241548



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 58/63 (92%), Gaps = 1/63 (1%)
 Strand = Plus / Minus

                                                                            
Query: 437      tgtattttgagttctttgaagtttgctctccttatggaaggattcccactcatggataag 496
                |||||||||||||||| || |||||||||||||||||||||||| |||||||| || |||
Sbjct: 18241500 tgtattttgagttcttcgaggtttgctctccttatggaaggatt-ccactcattgacaag 18241442

                   
Query: 497      gta 499
                |||
Sbjct: 18241441 gta 18241439



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                            
Query: 15       tccaatctgcagcgcttcctcgactgcaccaccccggcggtcgacacgcacattctcccc 74
                ||||| |||||| ||||| | |||||||||||||| || |||||||||||| | ||||||
Sbjct: 18242586 tccaacctgcagtgcttcttggactgcaccacccccgccgtcgacacgcacctcctcccc 18242527

                   
Query: 75       aag 77
                |||
Sbjct: 18242526 aag 18242524



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                        
Query: 495      aggtatatgaactatcccagggctttcctgggttgacatc 534
                |||| ||||||||||||||| ||| |||||||||||||||
Sbjct: 18241366 aggtgtatgaactatcccagagctatcctgggttgacatc 18241327
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  174 bits (88), Expect = 2e-40
 Identities = 166/192 (86%)
 Strand = Plus / Minus

                                                                            
Query: 106      tggcaccacgccgacgccgacagcgtcgagtacttcaacctcgccgacctgtgggagcag 165
                ||||||||||||||    |||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 18251186 tggcaccacgccgagatggacagcgtcgagtacttcaacctcgcggacctatgggagcag 18251127

                                                                            
Query: 166      tactacgagtggagcgcgtacggcgccggagccaccgtgcagctgcaaggaggggacaag 225
                ||||| ||||||||||||||||| || ||| | || ||||||||| | |||||||| |  
Sbjct: 18251126 tactatgagtggagcgcgtacggggctggaactacggtgcagctgtatggaggggaaaga 18251067

                                                                            
Query: 226      gtagttcagtactacgtcccgtacttgtcagggatacagctatacaccaacaaagtcctg 285
                ||||| || ||||| || || ||||||||||||||||||||||| |||||||||| || |
Sbjct: 18251066 gtagtccaatactatgttccctacttgtcagggatacagctatataccaacaaagcccag 18251007

                            
Query: 286      aatgcatccagg 297
                | ||||||||||
Sbjct: 18251006 actgcatccagg 18250995



 Score =  123 bits (62), Expect = 6e-25
 Identities = 89/98 (90%)
 Strand = Plus / Minus

                                                                            
Query: 295      aggagttttggcgaggattatgccatggacttctggagcgatgatgacgacaatgagaag 354
                ||||||||||| || ||| ||| ||||||||  |||||||||||||| ||||||||||||
Sbjct: 18250898 aggagttttggtgaagataatggcatggactattggagcgatgatgaggacaatgagaag 18250839

                                                      
Query: 355      atgtcaagatcctggagttcaacatctgacgactcatt 392
                ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 18250838 atgtcaagatcttggagttcaacatctgaagactcatt 18250801



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 58/63 (92%), Gaps = 1/63 (1%)
 Strand = Plus / Minus

                                                                            
Query: 437      tgtattttgagttctttgaagtttgctctccttatggaaggattcccactcatggataag 496
                |||||||||||||||| || |||||||||||||||||||||||| |||||||| || |||
Sbjct: 18250753 tgtattttgagttcttcgaggtttgctctccttatggaaggatt-ccactcattgacaag 18250695

                   
Query: 497      gta 499
                |||
Sbjct: 18250694 gta 18250692



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                            
Query: 15       tccaatctgcagcgcttcctcgactgcaccaccccggcggtcgacacgcacattctcccc 74
                ||||| |||||| ||||| | |||||||||||||| || |||||||||||| | ||||||
Sbjct: 18251839 tccaacctgcagtgcttcttggactgcaccacccccgccgtcgacacgcacctcctcccc 18251780

                   
Query: 75       aag 77
                |||
Sbjct: 18251779 aag 18251777



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                        
Query: 495      aggtatatgaactatcccagggctttcctgggttgacatc 534
                |||| ||||||||||||||| ||| |||||||||||||||
Sbjct: 18250619 aggtgtatgaactatcccagagctatcctgggttgacatc 18250580
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>emb|AJ292770.1|ZMA292770 Zea mays mRNA for putative fatty acid longase (fae2 gene)
          Length = 2018

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 143 acctcgccgacctgtgggagcag 165
           |||||||||||||||||||||||
Sbjct: 347 acctcgccgacctgtgggagcag 369
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>gb|AY109713.2| Zea mays CL1191_1 mRNA sequence
          Length = 1949

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 143 acctcgccgacctgtgggagcag 165
           |||||||||||||||||||||||
Sbjct: 315 acctcgccgacctgtgggagcag 337
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>gb|AC145571.3| Mus musculus BAC clone RP24-450H18 from chromosome Y, complete sequence
          Length = 212589

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 433   catttgtattttgagttctttg 454
             ||||||||||||||||||||||
Sbjct: 67307 catttgtattttgagttctttg 67286
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>gb|AC112173.3| Homo sapiens chromosome 5 clone CTD-2275D10, complete sequence
          Length = 125551

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 439   tattttgagttctttgaagttt 460
             ||||||||||||||||||||||
Sbjct: 78519 tattttgagttctttgaagttt 78498
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>gb|AC069015.8|AC069015 Mus musculus  BAC MGS3-174O22 (Genome Systems Mouse BAC Library)
            complete sequence
          Length = 72747

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 433  catttgtattttgagttctttg 454
            ||||||||||||||||||||||
Sbjct: 5372 catttgtattttgagttctttg 5393
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>gb|AC006508.2|AC006508 Mus musculus Yp BAC GSMB-187H15 (Genome Systems Mouse BAC Library)
              complete sequence
          Length = 185286

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 433    catttgtattttgagttctttg 454
              ||||||||||||||||||||||
Sbjct: 180561 catttgtattttgagttctttg 180582
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>gb|AC148319.2| Mus musculus BAC clone RP24-540G19 from Y, complete sequence
          Length = 159680

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 433   catttgtattttgagttctttg 454
             ||||||||||||||||||||||
Sbjct: 94970 catttgtattttgagttctttg 94949
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>gb|BT016112.1| Drosophila melanogaster LD13852 full insert cDNA
          Length = 7460

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 338  atgacgacaatgagaagatgt 358
            |||||||||||||||||||||
Sbjct: 6767 atgacgacaatgagaagatgt 6787
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>emb|AJ007518.1|DMAJ7518 Drosophila melanogaster mRNA for transcription factor, sin3
          Length = 7742

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 338  atgacgacaatgagaagatgt 358
            |||||||||||||||||||||
Sbjct: 7068 atgacgacaatgagaagatgt 7088
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>ref|NM_165916.1| Drosophila melanogaster Sin3A CG8815-RC, transcript variant C
            (Sin3A), mRNA
          Length = 7451

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 338  atgacgacaatgagaagatgt 358
            |||||||||||||||||||||
Sbjct: 6774 atgacgacaatgagaagatgt 6794
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>ref|NM_165915.1| Drosophila melanogaster Sin3A CG8815-RB, transcript variant B
            (Sin3A), mRNA
          Length = 7746

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 338  atgacgacaatgagaagatgt 358
            |||||||||||||||||||||
Sbjct: 7069 atgacgacaatgagaagatgt 7089
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>ref|NM_136955.2| Drosophila melanogaster Sin3A CG8815-RA, transcript variant A
            (Sin3A), mRNA
          Length = 8051

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 338  atgacgacaatgagaagatgt 358
            |||||||||||||||||||||
Sbjct: 7374 atgacgacaatgagaagatgt 7394
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>gb|AY052128.1| Drosophila melanogaster SD07795 full length cDNA
          Length = 3134

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 338  atgacgacaatgagaagatgt 358
            |||||||||||||||||||||
Sbjct: 2447 atgacgacaatgagaagatgt 2467
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>gb|AE003821.4| Drosophila melanogaster chromosome 2R, section 29 of 73 of the complete
             sequence
          Length = 294168

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 338   atgacgacaatgagaagatgt 358
             |||||||||||||||||||||
Sbjct: 54257 atgacgacaatgagaagatgt 54237
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>gb|AC007356.8|AC007356 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone
              BACR24H09, complete sequence
          Length = 189557

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 338    atgacgacaatgagaagatgt 358
              |||||||||||||||||||||
Sbjct: 149334 atgacgacaatgagaagatgt 149314
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>gb|AC136499.2| Homo sapiens chromosome 19 clone RP11-240C14, complete sequence
          Length = 92689

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 437   tgtattttgagttctttgaag 457
             |||||||||||||||||||||
Sbjct: 16526 tgtattttgagttctttgaag 16506



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 439   tattttgagttctttgaagt 458
             ||||||||||||||||||||
Sbjct: 19476 tattttgagttctttgaagt 19457
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>gb|AF024603.1|AF024603 Drosophila melanogaster transcriptional co-repressor SIN3A (Sin3A)
            mRNA, alternatively spliced, complete cds
          Length = 7920

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 338  atgacgacaatgagaagatgt 358
            |||||||||||||||||||||
Sbjct: 7369 atgacgacaatgagaagatgt 7389
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>ref|NM_188291.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1692

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 334 gatgatgacgacaatgagaagatg 357
           |||||||||||||||| |||||||
Sbjct: 895 gatgatgacgacaatgggaagatg 918
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>gb|AY780653.1| Pediastrum duplex strain SAG 28.83 internal transcribed spacer 2,
           partial sequence
          Length = 160

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 510 cccagggctttcctgggttg 529
           ||||||||||||||||||||
Sbjct: 3   cccagggctttcctgggttg 22
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>gb|DQ232587.1| Rhodobacter sphaeroides 2.4.1 plasmid E, partial sequence
          Length = 37100

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    caccccggcggtcgacacgc 63
             ||||||||||||||||||||
Sbjct: 26523 caccccggcggtcgacacgc 26504
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 324     cttctggagcgatgatgacg 343
               ||||||||||||||||||||
Sbjct: 1004050 cttctggagcgatgatgacg 1004069
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>gb|AC136525.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0585E02,
              complete sequence
          Length = 138677

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 444    tgagttctttgaagtttgct 463
              ||||||||||||||||||||
Sbjct: 129297 tgagttctttgaagtttgct 129278
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>gb|AC108802.15| Mus musculus chromosome 12, clone RP23-220J1, complete sequence
          Length = 175510

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   tttgtattttgagttctttg 454
             ||||||||||||||||||||
Sbjct: 47467 tttgtattttgagttctttg 47448
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>gb|AC130724.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0409G01,
             complete sequence
          Length = 143263

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 444   tgagttctttgaagtttgct 463
             ||||||||||||||||||||
Sbjct: 71215 tgagttctttgaagtttgct 71196
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>gb|AY577757.1| Pediastrum duplex strain SF0202NY 5.8S ribosomal RNA gene and
           internal transcribed spacer 2, partial sequence
          Length = 428

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 510 cccagggctttcctgggttg 529
           ||||||||||||||||||||
Sbjct: 232 cccagggctttcctgggttg 251
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>gb|AY577742.1| Pediastrum duplex strain EL0201CT 5.8S ribosomal RNA gene and
           internal transcribed spacer 2, partial sequence
          Length = 442

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 510 cccagggctttcctgggttg 529
           ||||||||||||||||||||
Sbjct: 233 cccagggctttcctgggttg 252
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>gb|AY577728.1| Pediastrum sp. UTEX LB144 5.8S ribosomal RNA gene and internal
           transcribed spacer 2, partial sequence
          Length = 442

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 510 cccagggctttcctgggttg 529
           ||||||||||||||||||||
Sbjct: 233 cccagggctttcctgggttg 252
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>emb|CR380838.2| Pan troglodytes chromosome X BAC RP43-021E02, complete sequence
          Length = 205764

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   ttgtattttgagttctttga 455
             ||||||||||||||||||||
Sbjct: 83392 ttgtattttgagttctttga 83373
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>gb|AC115760.9| Mus musculus chromosome 14, clone RP23-62M14, complete sequence
          Length = 222533

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 506   ctatcccagggctttcctgg 525
             ||||||||||||||||||||
Sbjct: 58035 ctatcccagggctttcctgg 58054
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>ref|XM_735767.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000867.03.0)
           partial mRNA
          Length = 507

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 437 tgtattttgagttctttgaa 456
           ||||||||||||||||||||
Sbjct: 230 tgtattttgagttctttgaa 211
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>emb|AL603628.4| Human DNA sequence from clone RP11-347E16 on chromosome 6, complete
            sequence
          Length = 3994

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 436  ttgtattttgagttctttga 455
            ||||||||||||||||||||
Sbjct: 2968 ttgtattttgagttctttga 2987
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>emb|AL590785.7| Human DNA sequence from clone RP11-321C1 on chromosome 6, complete
           sequence
          Length = 188159

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 436 ttgtattttgagttctttga 455
           ||||||||||||||||||||
Sbjct: 974 ttgtattttgagttctttga 993
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>emb|AL513534.17| Human DNA sequence from clone RP11-119F7 on chromosome 10 Contains a
             novel gene, a novel pseudgoene, the 3' end of the gene for
             leukemia-associated protein with a CXXC domain (LCX) a
             ribosomal protein S3A (RPS3A) pseudogene, the 5' end of a
             novel gene (FLJ10590) (FLJ10839, FLJ13376, FLJ10839) and a
             CpG island, complete sequence
          Length = 167633

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 425   gacctggccatttgtatttt 444
             ||||||||||||||||||||
Sbjct: 54592 gacctggccatttgtatttt 54611
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>emb|AL031000.1|HS795G23 Human DNA sequence from clone RP4-795G23 on chromosome Xq13.1-21.1
             Contains the TBX22 gene for T-box 22, complete sequence
          Length = 132029

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   ttgtattttgagttctttga 455
             ||||||||||||||||||||
Sbjct: 88072 ttgtattttgagttctttga 88053
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 116     ccgacgccgacagcgtcgag 135
               ||||||||||||||||||||
Sbjct: 2598730 ccgacgccgacagcgtcgag 2598749
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 115     gccgacgccgacagcgtcga 134
               ||||||||||||||||||||
Sbjct: 1135790 gccgacgccgacagcgtcga 1135809
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 146      tcgccgacctgtgggagcag 165
                ||||||||||||||||||||
Sbjct: 23225725 tcgccgacctgtgggagcag 23225744



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 185      acggcgccggagccaccgtg 204
                ||||||||||||||||||||
Sbjct: 10142260 acggcgccggagccaccgtg 10142279
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 444      tgagttctttgaagtttgct 463
                ||||||||||||||||||||
Sbjct: 13700156 tgagttctttgaagtttgct 13700137
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 334     gatgatgacgacaatgagaagatg 357
               |||||||||||||||| |||||||
Sbjct: 5511057 gatgatgacgacaatgggaagatg 5511034
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>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1015E06
          Length = 164583

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 334    gatgatgacgacaatgagaagatg 357
              |||||||||||||||| |||||||
Sbjct: 107897 gatgatgacgacaatgggaagatg 107874
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>dbj|AP004791.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0491D10
          Length = 162039

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    acggcgccggagccaccgtg 204
              ||||||||||||||||||||
Sbjct: 108626 acggcgccggagccaccgtg 108645
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>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0642B07
          Length = 139297

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   tcgccgacctgtgggagcag 165
             ||||||||||||||||||||
Sbjct: 60487 tcgccgacctgtgggagcag 60506
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>dbj|AK101377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036C04, full
           insert sequence
          Length = 2134

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 146 tcgccgacctgtgggagcag 165
           ||||||||||||||||||||
Sbjct: 415 tcgccgacctgtgggagcag 434
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>dbj|AK069537.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019I05, full
            insert sequence
          Length = 2565

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 334  gatgatgacgacaatgagaagatg 357
            |||||||||||||||| |||||||
Sbjct: 1542 gatgatgacgacaatgggaagatg 1565
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>emb|CT009504.11| Mouse DNA sequence from clone RP23-149M9 on chromosome 12, complete
             sequence
          Length = 190345

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   tttgtattttgagttctttg 454
             ||||||||||||||||||||
Sbjct: 83703 tttgtattttgagttctttg 83684


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,815,343
Number of Sequences: 3902068
Number of extensions: 3815343
Number of successful extensions: 79399
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78937
Number of HSP's gapped (non-prelim): 453
length of query: 541
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 518
effective length of database: 17,143,297,704
effective search space: 8880228210672
effective search space used: 8880228210672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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