ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd16o20 |
|---|---|
| Clone Library Name | barley_pub |
>CORO_SCHPO (O13923) Coronin-like protein crn1| Length = 601 Score = 31.2 bits (69), Expect = 1.1 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 18/81 (22%) Frame = +3 Query: 96 ESKGKSVMPSAEPLSR----------STVPNFRPSHPNASGYEWYQPRRSTDGWSQPKSI 245 E K ++ P A+P+S+ S P +P+ P+AS E +R D + +++ Sbjct: 422 EEKVETPKPEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETV 481 Query: 246 WQPEAN--------VKPASDP 284 QP+ KPAS P Sbjct: 482 TQPKREKTPVEKSFPKPASSP 502
>FP1_MYTED (Q25460) Adhesive plaque matrix protein (Polyphenolic adhesive| protein) (Foot protein 1) (MEFP1) (Fragment) Length = 875 Score = 30.8 bits (68), Expect = 1.5 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 7/71 (9%) Frame = +3 Query: 102 KGKSVMPS------AEPLSRSTVPNFRPSHPNASGY-EWYQPRRSTDGWSQPKSIWQPEA 260 K K PS + P S P++ P++ + S Y Y+P+++ +PK ++P Sbjct: 456 KAKPTYPSTYKAKPSYPASYKAKPSYPPTYKSKSSYPSSYKPKKTYPPTYKPKLTYKPTY 515 Query: 261 NVKPASDPGWR 293 KP+ P ++ Sbjct: 516 KPKPSYPPSYK 526
>YO86_CAEEL (P34622) Hypothetical protein ZK1236.6| Length = 206 Score = 30.4 bits (67), Expect = 1.9 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +3 Query: 162 RPSHPNASGYEWYQPRRSTDGWSQPKSIWQPEANVKP 272 +P+HP+ Y+ P T GW+ P S+ P A P Sbjct: 76 QPTHPDRESYQTALPANVTPGWNDPPSM-LPSAGTTP 111
>TBCE_BOVIN (Q32KS0) Tubulin-specific chaperone E (Tubulin-folding cofactor E)| Length = 528 Score = 30.0 bits (66), Expect = 2.5 Identities = 14/56 (25%), Positives = 23/56 (41%) Frame = +3 Query: 99 SKGKSVMPSAEPLSRSTVPNFRPSHPNASGYEWYQPRRSTDGWSQPKSIWQPEANV 266 S+ K PS+ P T P + N +G W + R GW + ++ N+ Sbjct: 187 SENKLTSPSSSPSPTGTFPTLKVLVLNRTGVTWAEVLRCASGWPVLEKLYLESNNI 242
>CU7C_LIMPO (P83361) Cuticle protein 7 isoform c (LpCP7c)| Length = 59 Score = 29.6 bits (65), Expect = 3.3 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -3 Query: 238 FGWDHPSVDLRGWYHSYPDAF 176 FG++HP G+YH YP AF Sbjct: 38 FGFEHPYHYYPGYYHGYPHAF 58
>CU7A_LIMPO (P83359) Cuticle protein 7 isoform a (LpCP7a)| Length = 59 Score = 29.6 bits (65), Expect = 3.3 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -3 Query: 238 FGWDHPSVDLRGWYHSYPDAF 176 FG++HP G+YH YP AF Sbjct: 38 FGFEHPYHYYPGYYHGYPHAF 58
>GLGB_ANASP (Q8YYX9) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 764 Score = 29.3 bits (64), Expect = 4.3 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 22/103 (21%) Frame = +3 Query: 132 PLSRSTVPNFRPSHPNASGYEWYQPRRSTDGWSQPKSI-------WQPEANVKPAS---- 278 P + S V N N S +W + RR TD +QP S+ W A+ +PA Sbjct: 217 PKTASIVSNLNSY--NWSDEDWLEQRRHTDPLTQPISVYEVHLGSWLHAASAEPAQLPNG 274 Query: 279 -----------DPGWRVPMYKXXXXXXXXXXXXLGYGHSPQFP 374 +PG R Y+ LGY H P Sbjct: 275 ETEPVVIASELNPGARFLTYRELASRLIPYVKELGYTHIELLP 317
>CEK1_SCHPO (P38938) Serine/threonine-protein kinase cek1 (EC 2.7.11.1)| Length = 1338 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +3 Query: 117 MPSAEPLSRSTVPNFRPSHPNASGYEWYQP 206 +PS P + VPN P HP+ + Y+ +P Sbjct: 565 LPSPSPRIHTIVPNSAPEHPSINDYKILKP 594
>BPAEA_HUMAN (O94833) Bullous pemphigoid antigen 1, isoforms 6/9/10| (Trabeculin-beta) (Bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 5171 Score = 28.9 bits (63), Expect = 5.7 Identities = 13/46 (28%), Positives = 22/46 (47%) Frame = -1 Query: 255 QVAKWISAGTIHPSIFVAGTIHIQMHLDDLDENWEQWNETVVQQRA 118 Q W+ G I + T ++ LDD++ W+ N+ V Q+ A Sbjct: 2928 QDVNWLGQGLIQSAAKSTSTQGLEHDLDDVNARWKTLNKKVAQRAA 2973
>VG02_BPP22 (P26745) DNA packaging protein gp2 (Terminase large subunit)| Length = 499 Score = 28.9 bits (63), Expect = 5.7 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = -3 Query: 241 DFGWDHPSVDLRGWYHSYPDAF 176 DFGW+HP ++ W+ D F Sbjct: 321 DFGWNHPQAHIQLWWDKDADVF 342
>VG2_BPLP7 (P16938) Protein GP2 (Fragment)| Length = 475 Score = 28.9 bits (63), Expect = 5.7 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = -3 Query: 241 DFGWDHPSVDLRGWYHSYPDAF 176 DFGW+HP ++ W+ D F Sbjct: 317 DFGWNHPQAHIQLWWDKDADVF 338
>KCNH3_RAT (O89047) Potassium voltage-gated channel subfamily H member 3| (Voltage-gated potassium channel subunit Kv12.2) (Ether-a-go-go-like potassium channel 2) (ELK channel 2) (rElk2) (Brain-specific eag-like channel 1) (BEC1) Length = 1087 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Frame = +3 Query: 114 VMPSAEPLSRSTVPNFRPSHPNA--SGYEWYQPRRSTDGWSQPKSIWQPEANVKP 272 + P A + T P+ RP HP + + W P + W + ++W ++ +P Sbjct: 952 LQPPAGSVLSGTWPHPRPGHPPPLMAPWPWGPPASQSSPWPRATALWTSTSDSEP 1006
>KCNH3_MOUSE (Q9WVJ0) Potassium voltage-gated channel subfamily H member 3| (Voltage-gated potassium channel subunit Kv12.2) (Ether-a-go-go-like potassium channel 2) (ELK channel 2) (mElk2) Length = 1087 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Frame = +3 Query: 114 VMPSAEPLSRSTVPNFRPSHPNA--SGYEWYQPRRSTDGWSQPKSIWQPEANVKP 272 + P A + T P+ RP HP + + W P + W + ++W ++ +P Sbjct: 952 LQPPAGSVLSGTWPHPRPGHPPPLMAPWPWGPPASQSSPWPRATALWTSTSDSEP 1006
>MIZF_HUMAN (Q9BQA5) MBD2-interacting zinc finger protein (Methyl-CpG-binding| protein 2-interacting zinc finger protein) Length = 517 Score = 28.5 bits (62), Expect = 7.4 Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 7/101 (6%) Frame = +1 Query: 115 SCPLLNHCLVPLFPIFVQVIQMHLDMNGTSHEDRRMDGPSRNPF-------GNLKLMSNQ 273 SC + + F Q +Q HL +G E+ D P F G L S+ Sbjct: 21 SCSFVCSTMEKFFEHVTQHLQQHLHGSGEEEEEEEEDDPLEEEFSCLWQECGFCSLDSSA 80 Query: 274 QVILDGVFQCIRRLTHPHQSPMHPWAMDILHNFLTLXVCYL 396 +I F C + + + W + L + L C L Sbjct: 81 DLIRHVYFHC-------YHTKLKQWGLQALQSQADLGPCIL 114
>HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment)| Length = 3866 Score = 28.1 bits (61), Expect = 9.7 Identities = 19/59 (32%), Positives = 24/59 (40%) Frame = +3 Query: 132 PLSRSTVPNFRPSHPNASGYEWYQPRRSTDGWSQPKSIWQPEANVKPASDPGWRVPMYK 308 PL + +V + SH S E + P R TD QP P AN + G P K Sbjct: 3442 PLDKGSVKKHKVSHLRTSS-EAHIPHRDTDPAPQPSVTRTPRANREQQDAAGVEQPSQK 3499 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,356,400 Number of Sequences: 219361 Number of extensions: 1432973 Number of successful extensions: 4661 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4513 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4657 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
