ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd17d06 |
|---|---|
| Clone Library Name | barley_pub |
>IUNH_LEIMA (P83851) Inosine-uridine preferring nucleoside hydrolase (EC| 3.2.2.1) (IU-nucleoside hydrolase) (IU-NH) (Purine nucleosidase) (Nonspecific nucleoside hydrolase) Length = 313 Score = 42.4 bits (98), Expect(2) = 4e-07 Identities = 17/43 (39%), Positives = 29/43 (67%) Frame = +2 Query: 155 LDDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNALLLDSV 283 +DD++ I +A G P +E++ +TT+ GN + E T+NA L+ V Sbjct: 12 IDDAVAIFLAHGNPEIELLAITTVVGNQSLEKVTQNARLVADV 54 Score = 28.9 bits (63), Expect(2) = 4e-07 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +1 Query: 304 VPVAEGSPEPLKGGEPRVADFVHGSDGLGN 393 VPVA G +PL G R A +HG G+GN Sbjct: 60 VPVAAGCTKPLVRGV-RNASHIHGETGMGN 88
>IUNH_CRIFA (Q27546) Inosine-uridine preferring nucleoside hydrolase (EC| 3.2.2.1) (IU-nucleoside hydrolase) (IU-NH) (Purine nucleosidase) (Nonspecific nucleoside hydrolase) Length = 314 Score = 45.1 bits (105), Expect = 4e-05 Identities = 19/43 (44%), Positives = 29/43 (67%) Frame = +2 Query: 155 LDDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNALLLDSV 283 LDD++ IL+A G P +E++ +TT+ GN T TRNA L+ + Sbjct: 12 LDDAVAILLAHGNPEIELLAITTVVGNQTLAKVTRNAQLVADI 54
>RIHC_SHISS (Q3Z5Y0) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 36.2 bits (82), Expect = 0.019 Identities = 17/40 (42%), Positives = 26/40 (65%) Frame = +2 Query: 155 LDDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNALLL 274 +DD++ I A P +++ +TT+ GNV+ E TRNAL L Sbjct: 13 IDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQL 52
>RIHC_SHIFL (Q83MH0) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 36.2 bits (82), Expect = 0.019 Identities = 17/40 (42%), Positives = 26/40 (65%) Frame = +2 Query: 155 LDDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNALLL 274 +DD++ I A P +++ +TT+ GNV+ E TRNAL L Sbjct: 13 IDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQL 52
>RIHC_ECOLI (P22564) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 36.2 bits (82), Expect = 0.019 Identities = 17/40 (42%), Positives = 26/40 (65%) Frame = +2 Query: 155 LDDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNALLL 274 +DD++ I A P +++ +TT+ GNV+ E TRNAL L Sbjct: 13 IDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQL 52
>RIHC_ECOL6 (P0C0W2) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 36.2 bits (82), Expect = 0.019 Identities = 17/40 (42%), Positives = 26/40 (65%) Frame = +2 Query: 155 LDDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNALLL 274 +DD++ I A P +++ +TT+ GNV+ E TRNAL L Sbjct: 13 IDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQL 52
>RIHC_ECO57 (Q8XA41) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 36.2 bits (82), Expect = 0.019 Identities = 17/40 (42%), Positives = 26/40 (65%) Frame = +2 Query: 155 LDDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNALLL 274 +DD++ I A P +++ +TT+ GNV+ E TRNAL L Sbjct: 13 IDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQL 52
>RIHC_SALPA (Q5PKI2) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 35.4 bits (80), Expect = 0.033 Identities = 17/40 (42%), Positives = 25/40 (62%) Frame = +2 Query: 155 LDDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNALLL 274 +DD+ I A P +++ +TT+ GNV+ E TRNAL L Sbjct: 15 IDDAAAIAAALFAPQLDLQLITTVAGNVSVEKTTRNALQL 54
>RIHC_SALTY (Q8ZRY7) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 306 Score = 35.4 bits (80), Expect = 0.033 Identities = 17/40 (42%), Positives = 25/40 (62%) Frame = +2 Query: 155 LDDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNALLL 274 +DD+ I A P +++ +TT+ GNV+ E TRNAL L Sbjct: 15 IDDAAAIAAALFAPQLDLQLITTVAGNVSVEKTTRNALQL 54
>RIHC_SALTI (Q8Z9M9) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 306 Score = 35.4 bits (80), Expect = 0.033 Identities = 17/40 (42%), Positives = 25/40 (62%) Frame = +2 Query: 155 LDDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNALLL 274 +DD+ I A P +++ +TT+ GNV+ E TRNAL L Sbjct: 15 IDDAAAIAAALFAPQLDLQLITTVAGNVSVEKTTRNALQL 54
>RIHC_SALCH (Q57TL0) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 306 Score = 35.4 bits (80), Expect = 0.033 Identities = 17/40 (42%), Positives = 25/40 (62%) Frame = +2 Query: 155 LDDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNALLL 274 +DD+ I A P +++ +TT+ GNV+ E TRNAL L Sbjct: 15 IDDAAAIAAALFAPQLDLQLITTVAGNVSVEKTTRNALQL 54
>YRI3_CORAM (Q45825) Hypothetical protein in ribF 3'region (Fragment)| Length = 92 Score = 34.7 bits (78), Expect = 0.057 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +2 Query: 155 LDDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNALLL 274 +DD+ + A P +++IG+T +GNVT E N L Sbjct: 11 IDDAFALAYAIAHPGIDLIGVTGTYGNVTIEQGMANTQAL 50
>YD62_SCHPO (Q10314) Hypothetical protein C17G8.02 in chromosome I| Length = 330 Score = 33.5 bits (75), Expect = 0.13 Identities = 14/37 (37%), Positives = 24/37 (64%) Frame = +2 Query: 158 DDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNAL 268 DD + + +A +I+G++T+ GN T E+ T+NAL Sbjct: 28 DDVVALTLAACAGHCKILGVSTVHGNTTLEFTTKNAL 64
>RIHB_SHISS (Q3Z044) Pyrimidine-specific ribonucleoside hydrolase rihB (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 313 Score = 33.5 bits (75), Expect = 0.13 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = +2 Query: 158 DDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNAL 268 DD++ I+MA P+++++G+T + GN T + N L Sbjct: 15 DDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGL 51
>RIHB_ECOLI (P33022) Pyrimidine-specific ribonucleoside hydrolase rihB (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 313 Score = 33.5 bits (75), Expect = 0.13 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = +2 Query: 158 DDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNAL 268 DD++ I+MA P+++++G+T + GN T + N L Sbjct: 15 DDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGL 51
>RIHB_ECOL6 (Q8FFT8) Pyrimidine-specific ribonucleoside hydrolase rihB (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 313 Score = 33.5 bits (75), Expect = 0.13 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = +2 Query: 158 DDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNAL 268 DD++ I+MA P+++++G+T + GN T + N L Sbjct: 15 DDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGL 51
>RIHB_ECO57 (Q8XE94) Pyrimidine-specific ribonucleoside hydrolase rihB (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 313 Score = 33.5 bits (75), Expect = 0.13 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = +2 Query: 158 DDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNAL 268 DD++ I+MA P+++++G+T + GN T + N L Sbjct: 15 DDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGL 51
>RIHB_SHIFL (Q83KF1) Pyrimidine-specific ribonucleoside hydrolase rihB (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 313 Score = 32.3 bits (72), Expect = 0.28 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = +2 Query: 158 DDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNAL 268 DD++ ++MA P+++++G+T + GN T + N L Sbjct: 15 DDAIAMMMAAKHPAIDLLGITIVAGNQTLDKTLINGL 51
>RIHA_PHOPR (Q6LQG2) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 310 Score = 31.6 bits (70), Expect = 0.48 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +2 Query: 158 DDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNAL 268 DD++ +++A P ++I +TT GN T E NAL Sbjct: 14 DDAIALILACASPELDIKAVTTSAGNQTPEKTLHNAL 50
>URH1_YEAST (Q04179) Uridine nucleosidase (EC 3.2.2.3) (Uridine ribohydrolase)| Length = 378 Score = 31.2 bits (69), Expect = 0.63 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +2 Query: 158 DDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNA 265 DD++ IL+ P+ ++G++T FGN E NA Sbjct: 55 DDAIAILLGCFHPAFNLLGISTCFGNAPPENTDYNA 90
>DNAA1_CHLTR (O84252) Chromosomal replication initiator protein dnaA 1| Length = 456 Score = 30.0 bits (66), Expect = 1.4 Identities = 20/73 (27%), Positives = 34/73 (46%) Frame = -1 Query: 357 NAWLSSLKRLRAALCYWNLRMPCSLTLSSKSALRVAYSVVTLPNMVVSPMISTLGSPKAI 178 N WL SLK LC+ C+L L +K + +V + + + V + +I+ G P + Sbjct: 21 NKWLRSLK----VLCF----DACNLYLEAKDSFQVTWFEEHIRHKVKASLINNNGKPIRV 72 Query: 177 RIVMLSSRNXRKQ 139 R+ L K+ Sbjct: 73 RVTSLDKSTPFKE 85
>DNAA1_CHLMU (Q9PKE4) Chromosomal replication initiator protein dnaA 1| Length = 456 Score = 30.0 bits (66), Expect = 1.4 Identities = 20/74 (27%), Positives = 35/74 (47%) Frame = -1 Query: 357 NAWLSSLKRLRAALCYWNLRMPCSLTLSSKSALRVAYSVVTLPNMVVSPMISTLGSPKAI 178 N WL SLK LC+ C+L L +K + +V + + + V + +I+ G P + Sbjct: 21 NKWLRSLK----VLCF----DACNLYLEAKDSFQVTWFEEHIRHKVKANLINNNGKPIRV 72 Query: 177 RIVMLSSRNXRKQA 136 R+ L K++ Sbjct: 73 RVTSLDKSTPFKES 86
>RIHA_SALTI (Q8Z8H0) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = +1 Query: 298 PEVPVAEGSPEPLKGGEPRVADFVHGSDGL 387 P++PVA G+ +PL E +AD VHG GL Sbjct: 59 PDIPVAGGAVKPLM-RELIIADNVHGESGL 87
>RIHA_SALPA (Q5PM78) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = +1 Query: 298 PEVPVAEGSPEPLKGGEPRVADFVHGSDGL 387 P++PVA G+ +PL E +AD VHG GL Sbjct: 59 PDIPVAGGAVKPLM-RELIIADNVHGESGL 87
>RIHA_SALCH (Q57RR6) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = +1 Query: 298 PEVPVAEGSPEPLKGGEPRVADFVHGSDGL 387 P++PVA G+ +PL E +AD VHG GL Sbjct: 59 PDIPVAGGAVKPLM-RELIIADNVHGESGL 87
>L100_ADE02 (P24932) Late 100 kDa protein| Length = 805 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -1 Query: 81 DISTDYSLSCESQCNICTP 25 D+S D L C +CN+CTP Sbjct: 556 DVSGDGLLECHCRCNLCTP 574
>L100_ADE05 (P24933) Late 100 kDa protein| Length = 807 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -1 Query: 81 DISTDYSLSCESQCNICTP 25 D+S D L C +CN+CTP Sbjct: 556 DVSGDGLLECHCRCNLCTP 574
>RIHA_SHEON (Q8EIM7) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 318 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = +2 Query: 158 DDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNAL 268 DD++ +++A P + + +TT GN T + NAL Sbjct: 14 DDAIALILALAHPDLVPLAVTTSAGNQTPDKTLNNAL 50
>PGPLE_DROME (Q9VXN9) Peptidoglycan-recognition protein-LE| Length = 345 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = -1 Query: 87 EGDISTDYSLSCESQCN 37 +G ISTDY L C QCN Sbjct: 302 DGHISTDYRLICHCQCN 318
>NRCAM_MOUSE (Q810U4) Neuronal cell adhesion molecule precursor (Nr-CAM)| (NgCAM-related cell adhesion molecule) (Ng-CAM-related) (mBravo) Length = 1256 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/57 (31%), Positives = 31/57 (54%) Frame = +2 Query: 68 SVLISPSRKKTLTCKKLLSPILTACFLXFLDDSMTILMAFGEPSVEIIGLTTIFGNV 238 ++++SP TL C+ +P + +L + + I +A +PS +I G T IF NV Sbjct: 363 NLVLSPGENGTLICRANGNPKPR---ISWLTNGVPIEIALDDPSRKIDGDTIIFSNV 416
>HOXX_BRAJA (P31907) Hydrogenase maturation factor hoxX| Length = 566 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +1 Query: 241 YRVCYTQCALAGQCERAXHPEVPVAEGSPEPLKGGEPRV 357 YR T CA+A E + + +P+P++ G+PR+ Sbjct: 130 YRNELTSCAVAAVLEAVA--AIEAGQAAPQPMQAGDPRI 166
>UPL2_ARATH (Q8H0T4) E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-)| (Ubiquitin-protein ligase 2) Length = 3658 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/63 (26%), Positives = 31/63 (49%) Frame = -1 Query: 189 PKAIRIVMLSSRNXRKQAVRIGDSSFLQVRVFFREGDISTDYSLSCESQCNICTPACLKL 10 P + +V+ N R+ A + G + V + I TD++L ES+ +I P C+ Sbjct: 1427 PHILALVLSEDDNTREIAAQDG---IVAVAI-----GILTDFNLKSESETDILAPKCISA 1478 Query: 9 LII 1 L++ Sbjct: 1479 LLL 1481
>PSD_BLOFL (Q7VQP8) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)| [Contains: Phosphatidylserine decarboxylase alpha chain; Phosphatidylserine decarboxylase beta chain] Length = 298 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +2 Query: 233 NVTTEYATRNALLLDSVREXGILRF 307 N+TT+ RNA++L E G+ +F Sbjct: 237 NITTKSTERNAVILSKAAEMGVFKF 261
>YBP2_ACIAM (P32986) Hypothetical protein in bps2 5'region (ORF2) (Fragment)| Length = 171 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +2 Query: 158 DDSMTILMAFGEPSVEIIGLTTIFGNVTTEYATRNAL 268 DD++ IL+A +++G+T + GNV E +NAL Sbjct: 14 DDTIAILLA--SKFFKLLGITIVAGNVKFENEIKNAL 48
>UPL1_ARATH (Q8GY23) E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-)| (Ubiquitin-protein ligase 1) Length = 3684 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/63 (26%), Positives = 30/63 (47%) Frame = -1 Query: 189 PKAIRIVMLSSRNXRKQAVRIGDSSFLQVRVFFREGDISTDYSLSCESQCNICTPACLKL 10 P + +V+ N R+ A + G + V + I TD++L ES+ I P C+ Sbjct: 1425 PHILALVLSEDDNTREIAAQDG---IVTVAI-----GILTDFNLKSESETEILAPKCISA 1476 Query: 9 LII 1 L++ Sbjct: 1477 LLL 1479 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,155,755 Number of Sequences: 219361 Number of extensions: 1061751 Number of successful extensions: 3127 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 3003 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3126 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
