ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd17d06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483754.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1516 Score = 172 bits (87), Expect = 5e-40 Identities = 191/226 (84%), Gaps = 5/226 (2%) Strand = Plus / Plus Query: 158 gatgacagcatgacgatcctaatggcttttggagaaccaagtgtggagatcattgggctg 217 ||||| |||||||| ||||| ||||| || ||| |||| |||||||||||| ||||| Sbjct: 197 gatgatagcatgacaatccttatggcgttcagagctccaactgtggagatcatagggctc 256 Query: 218 acaaccatattcggcaatgtcactacagagtatgctacacgcaatgcgctcttgctggac 277 ||||||||||| ||||| ||| ||| || |||| || | |||||||||||||| Sbjct: 257 acaaccatatttggcaacaccaccacaaagaatgcgactcagaatgcgctcttgct---- 312 Query: 278 agtgtgagagagcanggcatcctgaggttccagtagcagagggcagccctgagcctctta 337 ||||||||||||| | |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 313 -gtgtgagagagcaggacatcctgaggttccagtagcagagggcagcgcagagcctctca 371 Query: 338 agggaggagagccacgcgttgctgactttgttcatggatccgatgg 383 |||||||||||||||| |||||||||||||||||||| || ||||| Sbjct: 372 agggaggagagccacgtgttgctgactttgttcatgggtctgatgg 417
>dbj|AK065324.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P23, full insert sequence Length = 1517 Score = 172 bits (87), Expect = 5e-40 Identities = 191/226 (84%), Gaps = 5/226 (2%) Strand = Plus / Plus Query: 158 gatgacagcatgacgatcctaatggcttttggagaaccaagtgtggagatcattgggctg 217 ||||| |||||||| ||||| ||||| || ||| |||| |||||||||||| ||||| Sbjct: 198 gatgatagcatgacaatccttatggcgttcagagctccaactgtggagatcatagggctc 257 Query: 218 acaaccatattcggcaatgtcactacagagtatgctacacgcaatgcgctcttgctggac 277 ||||||||||| ||||| ||| ||| || |||| || | |||||||||||||| Sbjct: 258 acaaccatatttggcaacaccaccacaaagaatgcgactcagaatgcgctcttgct---- 313 Query: 278 agtgtgagagagcanggcatcctgaggttccagtagcagagggcagccctgagcctctta 337 ||||||||||||| | |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 314 -gtgtgagagagcaggacatcctgaggttccagtagcagagggcagcgcagagcctctca 372 Query: 338 agggaggagagccacgcgttgctgactttgttcatggatccgatgg 383 |||||||||||||||| |||||||||||||||||||| || ||||| Sbjct: 373 agggaggagagccacgtgttgctgactttgttcatgggtctgatgg 418
>dbj|AK061415.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D09, full insert sequence Length = 1329 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 297 tcctgaggttccagtagcagagggcagccctgagcctcttaagggaggagagccacgcgt 356 ||||||||| || ||||||||||||||| |||||||||| |||||||| | || | ||| Sbjct: 316 tcctgaggtgccggtagcagagggcagcgctgagcctctcaagggagggaaacctcacgt 375 Query: 357 tgctgactttgttcatggatccgatggtcttggtaa 392 |||||| |||||||||||||| ||||| |||||||| Sbjct: 376 tgctgattttgttcatggatcggatggacttggtaa 411
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 93.7 bits (47), Expect = 4e-16 Identities = 61/66 (92%) Strand = Plus / Minus Query: 275 gacagtgtgagagagcanggcatcctgaggttccagtagcagagggcagccctgagcctc 334 ||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||| Sbjct: 27917828 gacagtgtgagagagcaggacatcctgaggttccagtagcagagggcagcgcagagcctc 27917769 Query: 335 ttaagg 340 | |||| Sbjct: 27917768 tcaagg 27917763 Score = 67.9 bits (34), Expect = 2e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 338 agggaggagagccacgcgttgctgactttgttcatggatccgatgg 383 |||||||||||||||| |||||||||||||||||||| || ||||| Sbjct: 27917242 agggaggagagccacgtgttgctgactttgttcatgggtctgatgg 27917197 Score = 61.9 bits (31), Expect = 1e-06 Identities = 97/119 (81%) Strand = Plus / Minus Query: 157 agatgacagcatgacgatcctaatggcttttggagaaccaagtgtggagatcattgggct 216 |||||| |||||||| ||||| ||||| || ||| |||| |||||||||||| ||||| Sbjct: 27918026 agatgatagcatgacaatccttatggcgttcagagctccaactgtggagatcatagggct 27917967 Query: 217 gacaaccatattcggcaatgtcactacagagtatgctacacgcaatgcgctcttgctgg 275 ||||||||||| ||||| ||| ||| || |||| || | |||||||||||||||| Sbjct: 27917966 cacaaccatatttggcaacaccaccacaaagaatgcgactcagaatgcgctcttgctgg 27917908
>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1150_A11 Length = 142010 Score = 93.7 bits (47), Expect = 4e-16 Identities = 61/66 (92%) Strand = Plus / Minus Query: 275 gacagtgtgagagagcanggcatcctgaggttccagtagcagagggcagccctgagcctc 334 ||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||| Sbjct: 125906 gacagtgtgagagagcaggacatcctgaggttccagtagcagagggcagcgcagagcctc 125847 Query: 335 ttaagg 340 | |||| Sbjct: 125846 tcaagg 125841 Score = 67.9 bits (34), Expect = 2e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 338 agggaggagagccacgcgttgctgactttgttcatggatccgatgg 383 |||||||||||||||| |||||||||||||||||||| || ||||| Sbjct: 125320 agggaggagagccacgtgttgctgactttgttcatgggtctgatgg 125275 Score = 61.9 bits (31), Expect = 1e-06 Identities = 97/119 (81%) Strand = Plus / Minus Query: 157 agatgacagcatgacgatcctaatggcttttggagaaccaagtgtggagatcattgggct 216 |||||| |||||||| ||||| ||||| || ||| |||| |||||||||||| ||||| Sbjct: 126104 agatgatagcatgacaatccttatggcgttcagagctccaactgtggagatcatagggct 126045 Query: 217 gacaaccatattcggcaatgtcactacagagtatgctacacgcaatgcgctcttgctgg 275 ||||||||||| ||||| ||| ||| || |||| || | |||||||||||||||| Sbjct: 126044 cacaaccatatttggcaacaccaccacaaagaatgcgactcagaatgcgctcttgctgg 125986
>gb|AY106135.1| Zea mays PCO154542 mRNA sequence Length = 944 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 301 gaggttccagtagcagagggcagccctgagcctcttaagggaggagagccacgcgttgct 360 ||||| |||||||| |||||||||| ||||||||| ||||||||| |||| | ||||||| Sbjct: 5 gaggtcccagtagctgagggcagccatgagcctctcaagggaggaaagccgcacgttgct 64 Query: 361 gactttgttcatgga 375 ||||| ||||||||| Sbjct: 65 gacttcgttcatgga 79
>gb|AY588275.1| Zea mays putative inosine-uridine preferring nucleoside hydrolase mRNA, complete cds Length = 1458 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 158 gatgacagcatgacgatcctaatggcttttggagaaccaagtgtggagatcattgggctg 217 ||||| |||||||||||||||||||| || ||| ||| |||||||| ||||||||||| Sbjct: 232 gatgatagcatgacgatcctaatggcgttcagagcacctagtgtggaaatcattgggctc 291 Query: 218 acaaccatattcggcaa 234 || |||||||||||||| Sbjct: 292 acgaccatattcggcaa 308 Score = 71.9 bits (36), Expect = 1e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 304 gttccagtagcagagggcagccctgagcctcttaagggaggagagccacgcgttgctgac 363 |||||||||||||||||||||| |||||| || ||||||||| ||| || |||||||| Sbjct: 373 gttccagtagcagagggcagccatgagcccctaaagggaggaaagcggcgtgttgctgat 432 Query: 364 tttgttcatggatccgatgg 383 || |||||||| || ||||| Sbjct: 433 ttcgttcatgggtcagatgg 452
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 60.0 bits (30), Expect = 6e-06 Identities = 56/65 (86%) Strand = Plus / Minus Query: 276 acagtgtgagagagcanggcatcctgaggttccagtagcagagggcagccctgagcctct 335 |||||| || |||||| | | ||||||||| || ||||||||||||||| |||||||||| Sbjct: 22378375 acagtgcgacagagcaggccgtcctgaggtgccggtagcagagggcagcgctgagcctct 22378316 Query: 336 taagg 340 |||| Sbjct: 22378315 caagg 22378311 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 354 cgttgctgactttgttcatggatccgatggtcttggtaa 392 ||||||||| |||||||||||||| ||||| |||||||| Sbjct: 22377870 cgttgctgattttgttcatggatcggatggacttggtaa 22377832
>dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1155_H10 Length = 140475 Score = 60.0 bits (30), Expect = 6e-06 Identities = 56/65 (86%) Strand = Plus / Minus Query: 276 acagtgtgagagagcanggcatcctgaggttccagtagcagagggcagccctgagcctct 335 |||||| || |||||| | | ||||||||| || ||||||||||||||| |||||||||| Sbjct: 140383 acagtgcgacagagcaggccgtcctgaggtgccggtagcagagggcagcgctgagcctct 140324 Query: 336 taagg 340 |||| Sbjct: 140323 caagg 140319 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 354 cgttgctgactttgttcatggatccgatggtcttggtaa 392 ||||||||| |||||||||||||| ||||| |||||||| Sbjct: 139878 cgttgctgattttgttcatggatcggatggacttggtaa 139840
>dbj|AP005546.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1003_C09 Length = 124746 Score = 60.0 bits (30), Expect = 6e-06 Identities = 56/65 (86%) Strand = Plus / Minus Query: 276 acagtgtgagagagcanggcatcctgaggttccagtagcagagggcagccctgagcctct 335 |||||| || |||||| | | ||||||||| || ||||||||||||||| |||||||||| Sbjct: 14864 acagtgcgacagagcaggccgtcctgaggtgccggtagcagagggcagcgctgagcctct 14805 Query: 336 taagg 340 |||| Sbjct: 14804 caagg 14800 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 354 cgttgctgactttgttcatggatccgatggtcttggtaa 392 ||||||||| |||||||||||||| ||||| |||||||| Sbjct: 14359 cgttgctgattttgttcatggatcggatggacttggtaa 14321 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,743,023 Number of Sequences: 3902068 Number of extensions: 2743023 Number of successful extensions: 47612 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47577 Number of HSP's gapped (non-prelim): 31 length of query: 393 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 371 effective length of database: 17,147,199,772 effective search space: 6361611115412 effective search space used: 6361611115412 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
