ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd16n24 |
|---|---|
| Clone Library Name | barley_pub |
>UMP6_ARATH (Q9SX77) Unknown protein At1g47420, mitochondrial precursor| Length = 257 Score = 37.0 bits (84), Expect = 0.015 Identities = 20/50 (40%), Positives = 29/50 (58%) Frame = +2 Query: 2 NYFFHEQISRHRTLMNIFDKAPHVHKEAFVAPSASLIGDVEVGKGSSIWY 151 ++ + +SRHRTL+ VAP+AS+IGDV++ KGS I Y Sbjct: 32 SHHIEKHLSRHRTLIT-------------VAPNASVIGDVQINKGSFISY 68
>CAIE_SALTY (Q8ZRX6) Carnitine operon protein caiE| Length = 198 Score = 34.7 bits (78), Expect = 0.074 Identities = 17/24 (70%), Positives = 18/24 (75%) Frame = +2 Query: 65 PHVHKEAFVAPSASLIGDVEVGKG 136 P VH +AFV PSA LIGDV VG G Sbjct: 11 PVVHPDAFVHPSAVLIGDVIVGAG 34
>CAIE_SALTI (Q8Z9L6) Carnitine operon protein caiE| Length = 198 Score = 34.7 bits (78), Expect = 0.074 Identities = 17/24 (70%), Positives = 18/24 (75%) Frame = +2 Query: 65 PHVHKEAFVAPSASLIGDVEVGKG 136 P VH +AFV PSA LIGDV VG G Sbjct: 11 PVVHPDAFVHPSAVLIGDVIVGAG 34
>CAIE_SALPA (Q5PIL2) Carnitine operon protein caiE| Length = 198 Score = 34.7 bits (78), Expect = 0.074 Identities = 17/24 (70%), Positives = 18/24 (75%) Frame = +2 Query: 65 PHVHKEAFVAPSASLIGDVEVGKG 136 P VH +AFV PSA LIGDV VG G Sbjct: 11 PVVHPDAFVHPSAVLIGDVIVGAG 34
>CAIE_SALCH (Q57TJ2) Carnitine operon protein caiE| Length = 198 Score = 34.7 bits (78), Expect = 0.074 Identities = 17/24 (70%), Positives = 18/24 (75%) Frame = +2 Query: 65 PHVHKEAFVAPSASLIGDVEVGKG 136 P VH +AFV PSA LIGDV VG G Sbjct: 11 PVVHPDAFVHPSAVLIGDVIVGAG 34
>Y3753_PSEAE (P40882) Hypothetical protein PA3753| Length = 174 Score = 34.3 bits (77), Expect = 0.096 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = +2 Query: 56 DKAPHVHKEAFVAPSASLIGDVEVGKGSSIWY 151 D H ++++APSA++IG V + G+S+W+ Sbjct: 7 DARVETHPDSWIAPSAAVIGKVRLDAGASVWF 38
>CAIE_SHIFL (Q83SQ8) Carnitine operon protein caiE| Length = 196 Score = 33.5 bits (75), Expect = 0.16 Identities = 17/24 (70%), Positives = 17/24 (70%) Frame = +2 Query: 65 PHVHKEAFVAPSASLIGDVEVGKG 136 P VH AFV PSA LIGDV VG G Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAG 34
>CAIE_ECOLI (P39206) Carnitine operon protein caiE| Length = 196 Score = 33.5 bits (75), Expect = 0.16 Identities = 17/24 (70%), Positives = 17/24 (70%) Frame = +2 Query: 65 PHVHKEAFVAPSASLIGDVEVGKG 136 P VH AFV PSA LIGDV VG G Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAG 34
>CAIE_ECOL6 (Q8FLA7) Carnitine operon protein caiE| Length = 196 Score = 33.5 bits (75), Expect = 0.16 Identities = 17/24 (70%), Positives = 17/24 (70%) Frame = +2 Query: 65 PHVHKEAFVAPSASLIGDVEVGKG 136 P VH AFV PSA LIGDV VG G Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAG 34
>CAIE_ECO57 (Q8XA36) Carnitine operon protein caiE| Length = 196 Score = 33.5 bits (75), Expect = 0.16 Identities = 17/24 (70%), Positives = 17/24 (70%) Frame = +2 Query: 65 PHVHKEAFVAPSASLIGDVEVGKG 136 P VH AFV PSA LIGDV VG G Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAG 34
>UMP7_ARATH (Q9FMV1) Unknown mitochondrial protein At5g63510| Length = 252 Score = 31.6 bits (70), Expect = 0.63 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +2 Query: 65 PHVHKEAFVAPSASLIGDVEVGKGSSIW 148 P V +A+VAP+ L G V V GSS+W Sbjct: 66 PKVAVDAYVAPNVVLAGQVTVWDGSSVW 93
>PAAY_ECOLI (P77181) Phenylacetic acid degradation protein paaY| Length = 196 Score = 31.6 bits (70), Expect = 0.63 Identities = 15/24 (62%), Positives = 19/24 (79%) Frame = +2 Query: 65 PHVHKEAFVAPSASLIGDVEVGKG 136 P V +E+FV P+A LIGDV +GKG Sbjct: 11 PVVPEESFVHPTAVLIGDVILGKG 34
>CAIE_PROSL (Q8GB16) Carnitine operon protein caiE| Length = 197 Score = 31.6 bits (70), Expect = 0.63 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = +2 Query: 65 PHVHKEAFVAPSASLIGDVEVGKG 136 P VH A++ PSA LIGDV +G G Sbjct: 11 PVVHPTAYIHPSAVLIGDVIIGAG 34
>UMP8_ARATH (Q9SMN1) Unknown mitochondrial protein At3g48680| Length = 256 Score = 31.6 bits (70), Expect = 0.63 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +2 Query: 65 PHVHKEAFVAPSASLIGDVEVGKGSSIW 148 P V +A+VAP+ L G V V GSS+W Sbjct: 70 PKVAVDAYVAPNVVLAGQVTVWDGSSVW 97
>Y304_METJA (Q57752) Hypothetical protein MJ0304| Length = 159 Score = 30.0 bits (66), Expect = 1.8 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 71 VHKEAFVAPSASLIGDVEVGKGSSIWY 151 + K +A A ++GDV +G SS+WY Sbjct: 2 ISKNVRIAKGAVIVGDVTIGDYSSVWY 28
>LPXA_XANCP (Q8PAW5) Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine| O-acyltransferase (EC 2.3.1.129) (UDP-N-acetylglucosamine acyltransferase) Length = 263 Score = 29.3 bits (64), Expect = 3.1 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 56 DKAPHVHKEAFVAPSASLIGDVEVGKGSSI 145 D+AP +H A + P+A L DV VG S I Sbjct: 3 DQAPLIHPTAVIDPAARLASDVRVGAFSLI 32
>CYSE_SHIFL (P0A9D7) Serine acetyltransferase (EC 2.3.1.30) (SAT)| Length = 273 Score = 28.5 bits (62), Expect = 5.3 Identities = 9/30 (30%), Positives = 19/30 (63%) Frame = +2 Query: 56 DKAPHVHKEAFVAPSASLIGDVEVGKGSSI 145 D+ P + + + A ++G++EVG+G+ I Sbjct: 191 DRHPKIREGVMIGAGAKILGNIEVGRGAKI 220
>CYSE_SALTY (P29847) Serine acetyltransferase (EC 2.3.1.30) (SAT)| Length = 273 Score = 28.5 bits (62), Expect = 5.3 Identities = 9/30 (30%), Positives = 19/30 (63%) Frame = +2 Query: 56 DKAPHVHKEAFVAPSASLIGDVEVGKGSSI 145 D+ P + + + A ++G++EVG+G+ I Sbjct: 191 DRHPKIREGVMIGAGAKILGNIEVGRGAKI 220
>CYSE_ECOLI (P0A9D4) Serine acetyltransferase (EC 2.3.1.30) (SAT)| Length = 273 Score = 28.5 bits (62), Expect = 5.3 Identities = 9/30 (30%), Positives = 19/30 (63%) Frame = +2 Query: 56 DKAPHVHKEAFVAPSASLIGDVEVGKGSSI 145 D+ P + + + A ++G++EVG+G+ I Sbjct: 191 DRHPKIREGVMIGAGAKILGNIEVGRGAKI 220
>CYSE_ECOL6 (P0A9D5) Serine acetyltransferase (EC 2.3.1.30) (SAT)| Length = 273 Score = 28.5 bits (62), Expect = 5.3 Identities = 9/30 (30%), Positives = 19/30 (63%) Frame = +2 Query: 56 DKAPHVHKEAFVAPSASLIGDVEVGKGSSI 145 D+ P + + + A ++G++EVG+G+ I Sbjct: 191 DRHPKIREGVMIGAGAKILGNIEVGRGAKI 220
>CYSE_ECO57 (P0A9D6) Serine acetyltransferase (EC 2.3.1.30) (SAT)| Length = 273 Score = 28.5 bits (62), Expect = 5.3 Identities = 9/30 (30%), Positives = 19/30 (63%) Frame = +2 Query: 56 DKAPHVHKEAFVAPSASLIGDVEVGKGSSI 145 D+ P + + + A ++G++EVG+G+ I Sbjct: 191 DRHPKIREGVMIGAGAKILGNIEVGRGAKI 220 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,941,853 Number of Sequences: 219361 Number of extensions: 274567 Number of successful extensions: 887 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 869 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 886 length of database: 80,573,946 effective HSP length: 26 effective length of database: 74,870,560 effective search space used: 1796893440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
