ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd17c15 |
|---|---|
| Clone Library Name | barley_pub |
>TLP40_SPIOL (O49939) Peptidyl-prolyl cis-trans isomerase, chloroplast precursor| (EC 5.2.1.8) (40 kDa thylakoid lumen PPIase) (40 kDa thylakoid lumen rotamase) Length = 449 Score = 180 bits (457), Expect = 2e-45 Identities = 92/136 (67%), Positives = 112/136 (82%), Gaps = 1/136 (0%) Frame = +3 Query: 168 KGNSFSWNKCAISIALSVGLITCPPTFGWSAHAFPL-EPVIPDISVLISGPPIKDPGALL 344 K SFS +CAIS+AL+ LI+ P+ W HA L PV+PD++VLISGPPIKDP ALL Sbjct: 60 KKRSFSVKECAISLALAAALISGVPSLSWERHAEALTSPVLPDLAVLISGPPIKDPEALL 119 Query: 345 RYALPIDNKAIREVQKPLEDITDSLKVSGVRALDSVERNVRQASRALTNGRSLILTGLAE 524 RYALPIDNKAIREVQKPLEDIT+SL+V G++ALDSVERN++QASRAL NG+SLI+ GLAE Sbjct: 120 RYALPIDNKAIREVQKPLEDITESLRVLGLKALDSVERNLKQASRALKNGKSLIIAGLAE 179 Query: 525 SKRENGEKILDKLAVG 572 SK++ G ++LDKL G Sbjct: 180 SKKDRGVELLDKLEAG 195
>PER50_ARATH (Q43731) Peroxidase 50 precursor (EC 1.11.1.7) (Atperox P50)| (PRXR2) (ATP9a) Length = 329 Score = 32.3 bits (72), Expect = 0.98 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%) Frame = -3 Query: 328 SLMGGPEIRTEISGITGSSGKAWADHPNVGGQVINPTDNAIEIAHLF-----QLNEFPXL 164 +L GGP+ E+ + G S A +VGG++ +PTD+ ++ LF LN+ L Sbjct: 138 NLAGGPQYDVELGRLDGLSSTA----ASVGGKLPHPTDDVNKLTSLFAKNGLSLNDMIAL 193 Query: 163 AG 158 +G Sbjct: 194 SG 195
>PPNK1_BACHK (Q6HLY2) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase 1) Length = 265 Score = 30.8 bits (68), Expect = 2.9 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 11/74 (14%) Frame = -3 Query: 367 LSMGKAYLNKAPGSLMGGPEIRTE-----------ISGITGSSGKAWADHPNVGGQVINP 221 L+M +A + A G+L+ EIR E IS +GS+ A + +GG +I+P Sbjct: 119 LAMNEATVKSAEGTLVTEVEIRGEYFETFRGDGLCISTPSGST----AYNKALGGAIIHP 174 Query: 220 TDNAIEIAHLFQLN 179 + AI+IA + +N Sbjct: 175 SIEAIQIAEMASIN 188
>PPNK1_BACCZ (Q63EG5) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase 1) Length = 265 Score = 30.8 bits (68), Expect = 2.9 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 11/74 (14%) Frame = -3 Query: 367 LSMGKAYLNKAPGSLMGGPEIRTE-----------ISGITGSSGKAWADHPNVGGQVINP 221 L+M +A + A G+L+ EIR E IS +GS+ A + +GG +I+P Sbjct: 119 LAMNEATVKSAEGTLVTEVEIRGEYFETFRGDGLCISTPSGST----AYNKALGGAIIHP 174 Query: 220 TDNAIEIAHLFQLN 179 + AI+IA + +N Sbjct: 175 SIEAIQIAEMASIN 188
>PPNK1_BACCR (Q81GJ9) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase 1) Length = 265 Score = 30.8 bits (68), Expect = 2.9 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 11/74 (14%) Frame = -3 Query: 367 LSMGKAYLNKAPGSLMGGPEIRTE-----------ISGITGSSGKAWADHPNVGGQVINP 221 L+M +A + A G+L+ EIR E IS +GS+ A + +GG +I+P Sbjct: 119 LAMNEATVKSAEGTLVTEVEIRGEYFETFRGDGLCISTPSGST----AYNKALGGAIIHP 174 Query: 220 TDNAIEIAHLFQLN 179 + AI+IA + +N Sbjct: 175 SIEAIQIAEMASIN 188
>PPNK1_BACC1 (Q73BU7) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase 1) Length = 265 Score = 30.8 bits (68), Expect = 2.9 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 11/74 (14%) Frame = -3 Query: 367 LSMGKAYLNKAPGSLMGGPEIRTE-----------ISGITGSSGKAWADHPNVGGQVINP 221 L+M +A + A G+L+ EIR E IS +GS+ A + +GG +I+P Sbjct: 119 LAMNEATVKSAEGTLVTEVEIRGEYFETFRGDGLCISTPSGST----AYNKALGGAIIHP 174 Query: 220 TDNAIEIAHLFQLN 179 + AI+IA + +N Sbjct: 175 SIEAIQIAEMASIN 188
>PPNK1_BACAN (Q81TQ3) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase 1) Length = 265 Score = 30.8 bits (68), Expect = 2.9 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 11/74 (14%) Frame = -3 Query: 367 LSMGKAYLNKAPGSLMGGPEIRTE-----------ISGITGSSGKAWADHPNVGGQVINP 221 L+M +A + A G+L+ EIR E IS +GS+ A + +GG +I+P Sbjct: 119 LAMNEATVKSAEGTLVTEVEIRGEYFETFRGDGLCISTPSGST----AYNKALGGAIIHP 174 Query: 220 TDNAIEIAHLFQLN 179 + AI+IA + +N Sbjct: 175 SIEAIQIAEMASIN 188
>VG22_ICHV1 (Q00105) Hypothetical gene 22 protein| Length = 1403 Score = 30.4 bits (67), Expect = 3.7 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Frame = +3 Query: 339 LLRYALPIDNKAIREVQKPLEDITDSLKVSGVRALDSVERNVRQASRALTNGRS-LILTG 515 +L L + +RE+Q+ L + + + R + S E +R+ R LT+ R L+ TG Sbjct: 978 VLNAGLTLARTELREIQRELVHEKNKSRDAEQRHVAS-EAALREQIRTLTDERDRLLATG 1036 Query: 516 LAESKRENGE 545 +A+ +REN E Sbjct: 1037 VADLQRENAE 1046
>YR034_MIMIV (Q5UPB0) Hypothetical protein R34| Length = 409 Score = 29.3 bits (64), Expect = 8.3 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +2 Query: 200 NFYSIVCWINYLPTNIWMVGPCFSARTC 283 N+Y+I CW YL + I+ S R+C Sbjct: 120 NYYNITCWNYYLQSKIFRYSDLSSIRSC 147
>A6_DROME (O46341) Protein a6| Length = 409 Score = 29.3 bits (64), Expect = 8.3 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = -3 Query: 544 SPFSLFDSARPVSIKLLPLVSALEACLTFLSTESNALTPETLRLSVISSNGF*TS 380 +P + ++ V++ L+P S CLT +S P+ R S +SNGF T+ Sbjct: 162 APLTQSETIEEVTVSLVPRTSTTANCLTRVSGH-----PKPCRASTAASNGFATA 211
>PTOCB_ECOLI (P19642) PTS system maltose- and glucose-specific EIICB component| [Includes: Maltose and glucose permease IIC component (PTS system maltose- and glucose-specific EIIC component); Maltose- and glucose-specific phosphotransferase enzyme IIB com Length = 530 Score = 29.3 bits (64), Expect = 8.3 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%) Frame = -3 Query: 451 TESNALTPETLRLSVISSNGF*TSRIALLSMGK--AYLNKAPGSLM-----GGPEIRTEI 293 T S ALT +LS +++GF S LS GK A+L PG+ + PE R +I Sbjct: 262 TVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHKI 321 Query: 292 SGI 284 G+ Sbjct: 322 KGL 324
>ILVH_GUITH (O78451) Acetolactate synthase small subunit (EC 2.2.1.6) (AHAS)| (Acetohydroxy-acid synthase small subunit) (ALS) Length = 169 Score = 29.3 bits (64), Expect = 8.3 Identities = 17/58 (29%), Positives = 29/58 (50%) Frame = +3 Query: 291 DISVLISGPPIKDPGALLRYALPIDNKAIREVQKPLEDITDSLKVSGVRALDSVERNV 464 +I L GP K + + +P D + I ++ K L + + LKV + L +VER + Sbjct: 29 NIESLAVGPTEKLGISRITMVVPSDERTIEQLTKQLYKLVNILKVEDITNLPTVEREL 86 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,991,418 Number of Sequences: 219361 Number of extensions: 1186907 Number of successful extensions: 3484 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3411 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3483 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
