ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd17b18 |
|---|---|
| Clone Library Name | barley_pub |
>LON_ECOLI (P0A9M0) ATP-dependent protease La (EC 3.4.21.53)| Length = 784 Score = 43.1 bits (100), Expect = 5e-04 Identities = 24/93 (25%), Positives = 49/93 (52%) Frame = +2 Query: 236 LSLPMFSLQGFLLFPEAILTLRVTQPRFAAAVDKAINHVDNPCMIGVVHLYQHVNDGHHA 415 + +P+ L+ +++P ++ L V + + ++ A++H D M+ G + Sbjct: 9 IEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDH-DKKIMLVAQKEASTDEPGVND 67 Query: 416 IASVGTTAEILEVRRLDDGSSNVITRGQQRFRL 514 + +VGT A IL++ +L DG+ V+ G QR R+ Sbjct: 68 LFTVGTVASILQMLKLPDGTVKVLVEGLQRARI 100
>LON_ECOL6 (P0A9M1) ATP-dependent protease La (EC 3.4.21.53)| Length = 784 Score = 43.1 bits (100), Expect = 5e-04 Identities = 24/93 (25%), Positives = 49/93 (52%) Frame = +2 Query: 236 LSLPMFSLQGFLLFPEAILTLRVTQPRFAAAVDKAINHVDNPCMIGVVHLYQHVNDGHHA 415 + +P+ L+ +++P ++ L V + + ++ A++H D M+ G + Sbjct: 9 IEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDH-DKKIMLVAQKEASTDEPGVND 67 Query: 416 IASVGTTAEILEVRRLDDGSSNVITRGQQRFRL 514 + +VGT A IL++ +L DG+ V+ G QR R+ Sbjct: 68 LFTVGTVASILQMLKLPDGTVKVLVEGLQRARI 100
>LON_BUCBP (Q89A99) ATP-dependent protease La (EC 3.4.21.53)| Length = 780 Score = 39.3 bits (90), Expect = 0.007 Identities = 21/96 (21%), Positives = 54/96 (56%), Gaps = 1/96 (1%) Frame = +2 Query: 236 LSLPMFSLQGFLLFPEAILTLRVTQPRFAAAVDKAINHVDNPCMIGVVHLYQHVNDG-HH 412 + +P+ L+ +++P ++ L V + + ++ ++N N ++ V +++ + Sbjct: 9 IEIPVLPLRDVVIYPYMVIPLFVGRDKSIKCIEASMNK--NKKIMLVTQKEAEIDEPTDN 66 Query: 413 AIASVGTTAEILEVRRLDDGSSNVITRGQQRFRLRR 520 + ++GTTA IL++ +L DG+ V+ G QR ++++ Sbjct: 67 DLFTIGTTASILQMLKLPDGTVKVLVEGLQRAKVKK 102
>LON_RHIME (O69177) ATP-dependent protease La (EC 3.4.21.53)| Length = 806 Score = 38.1 bits (87), Expect = 0.016 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Frame = +2 Query: 245 PMFSLQGFLLFPEAILTLRVTQPRFAAAVDKAINHVDNPCMIGVVHLYQHVNDGH-HAIA 421 P+ L+ ++FP I+ L V + + A+++ + D M+ V + +D AI Sbjct: 15 PVLPLRDIVVFPHMIVPLFVGREKSIRALEEVMG-TDKQIML-VTQINATDDDPEPSAIY 72 Query: 422 SVGTTAEILEVRRLDDGSSNVITRGQQRFRLRR 520 VGT A +L++ +L DG+ V+ G+ R + R Sbjct: 73 KVGTIANVLQLLKLPDGTVKVLVEGRSRAEIER 105
>LON_BRUSU (Q8G0I7) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 37.7 bits (86), Expect = 0.022 Identities = 24/99 (24%), Positives = 48/99 (48%) Frame = +2 Query: 224 GGAVLSLPMFSLQGFLLFPEAILTLRVTQPRFAAAVDKAINHVDNPCMIGVVHLYQHVND 403 GGA + L+ ++FP I+ L V + + A+++ + VD ++ + Sbjct: 16 GGADGLYAVLPLRDIVVFPHMIVPLFVGREKSIRALEEVMG-VDKQILLATQKNAADDDP 74 Query: 404 GHHAIASVGTTAEILEVRRLDDGSSNVITRGQQRFRLRR 520 AI +GT A +L++ +L DG+ V+ G R ++ + Sbjct: 75 APDAIYEIGTIANVLQLLKLPDGTVKVLVEGTARAKISK 113
>LON_BRUME (Q8YHC6) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 37.7 bits (86), Expect = 0.022 Identities = 24/99 (24%), Positives = 48/99 (48%) Frame = +2 Query: 224 GGAVLSLPMFSLQGFLLFPEAILTLRVTQPRFAAAVDKAINHVDNPCMIGVVHLYQHVND 403 GGA + L+ ++FP I+ L V + + A+++ + VD ++ + Sbjct: 16 GGADGLYAVLPLRDIVVFPHMIVPLFVGREKSIRALEEVMG-VDKQILLATQKNAADDDP 74 Query: 404 GHHAIASVGTTAEILEVRRLDDGSSNVITRGQQRFRLRR 520 AI +GT A +L++ +L DG+ V+ G R ++ + Sbjct: 75 APDAIYEIGTIANVLQLLKLPDGTVKVLVEGTARAKISK 113
>LON_BRUAB (P0C113) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 37.7 bits (86), Expect = 0.022 Identities = 24/99 (24%), Positives = 48/99 (48%) Frame = +2 Query: 224 GGAVLSLPMFSLQGFLLFPEAILTLRVTQPRFAAAVDKAINHVDNPCMIGVVHLYQHVND 403 GGA + L+ ++FP I+ L V + + A+++ + VD ++ + Sbjct: 16 GGADGLYAVLPLRDIVVFPHMIVPLFVGREKSIRALEEVMG-VDKQILLATQKNAADDDP 74 Query: 404 GHHAIASVGTTAEILEVRRLDDGSSNVITRGQQRFRLRR 520 AI +GT A +L++ +L DG+ V+ G R ++ + Sbjct: 75 APDAIYEIGTIANVLQLLKLPDGTVKVLVEGTARAKISK 113
>LON_BRUA2 (Q2YPX3) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 37.7 bits (86), Expect = 0.022 Identities = 24/99 (24%), Positives = 48/99 (48%) Frame = +2 Query: 224 GGAVLSLPMFSLQGFLLFPEAILTLRVTQPRFAAAVDKAINHVDNPCMIGVVHLYQHVND 403 GGA + L+ ++FP I+ L V + + A+++ + VD ++ + Sbjct: 16 GGADGLYAVLPLRDIVVFPHMIVPLFVGREKSIRALEEVMG-VDKQILLATQKNAADDDP 74 Query: 404 GHHAIASVGTTAEILEVRRLDDGSSNVITRGQQRFRLRR 520 AI +GT A +L++ +L DG+ V+ G R ++ + Sbjct: 75 APDAIYEIGTIANVLQLLKLPDGTVKVLVEGTARAKISK 113
>LON2_MYXXA (P36774) ATP-dependent protease La 2 (EC 3.4.21.53)| Length = 826 Score = 36.6 bits (83), Expect = 0.048 Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 2/93 (2%) Frame = +2 Query: 242 LPMFSLQGFLLFPEAILTLRVTQPRFAAAVDKAINHVDNPCMIGVV--HLYQHVNDGHHA 415 LP+ L+ + FP +L L V + + A + A+ + +IGVV + + G Sbjct: 32 LPILPLRNSVFFPGGVLPLAVGRQKTIALIKDAVR---DDQVIGVVTQRRAEEEDPGAAD 88 Query: 416 IASVGTTAEILEVRRLDDGSSNVITRGQQRFRL 514 + ++GT A I+++ ++ + + +++ +G RFR+ Sbjct: 89 LYTMGTVARIVKLLKMGEDNYSLVVQGLARFRV 121
>LON_VIBPA (P74956) ATP-dependent protease La (EC 3.4.21.53)| Length = 783 Score = 35.8 bits (81), Expect = 0.082 Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 1/94 (1%) Frame = +2 Query: 236 LSLPMFSLQGFLLFPEAILTLRVTQPRFAAAVDKAINHVDNPCMIGVVHLYQHVNDGH-H 412 + +P+ L+ +++P ++ L V + + + ++ A+ N ++ V ++ Sbjct: 9 IEIPVLPLRDVVVYPHMVIPLFVGREKSISCLETAME--TNKQVLLVAQKQADTDEPTVD 66 Query: 413 AIASVGTTAEILEVRRLDDGSSNVITRGQQRFRL 514 + VGT A IL++ +L DG+ V+ GQQR ++ Sbjct: 67 DLFEVGTVATILQLLKLPDGTVKVLVEGQQRAKI 100
>LON_BUCAP (Q8K988) ATP-dependent protease La (EC 3.4.21.53)| Length = 777 Score = 35.8 bits (81), Expect = 0.082 Identities = 19/90 (21%), Positives = 46/90 (51%) Frame = +2 Query: 236 LSLPMFSLQGFLLFPEAILTLRVTQPRFAAAVDKAINHVDNPCMIGVVHLYQHVNDGHHA 415 + +P+ L+ +++P ++ L V + + ++ ++N+ D M+ + Sbjct: 9 IKIPVLPLRDVVVYPHMVIPLFVGRKKSIHCIETSMNN-DKKIMLIAQKEASKDEPSTND 67 Query: 416 IASVGTTAEILEVRRLDDGSSNVITRGQQR 505 + ++GT + IL++ +L DG+ V+ G QR Sbjct: 68 LFNIGTISSILQMLKLPDGTVKVLVEGLQR 97
>LON_AZOBR (P77810) ATP-dependent protease La (EC 3.4.21.53)| Length = 810 Score = 33.5 bits (75), Expect = 0.41 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Frame = +2 Query: 245 PMFSLQGFLLFPEAILTLRVTQPRFAAAVDKAINHVDNPCMIGVVHLYQHVNDGHHA-IA 421 P+ L+ ++FP I+ L V + + A++ + D+ ++ V +D A I Sbjct: 17 PVPPLRDIVVFPHMIVPLFVGREKSVRALEDVMK--DDKQILLVTQKNAAQDDPTPADIY 74 Query: 422 SVGTTAEILEVRRLDDGSSNVITRGQQR 505 SVGT +L++ +L DG+ V+ G QR Sbjct: 75 SVGTVGTVLQLLKLPDGTVKVLVEGGQR 102
>LON_BUCAI (P57549) ATP-dependent protease La (EC 3.4.21.53)| Length = 777 Score = 33.1 bits (74), Expect = 0.53 Identities = 18/94 (19%), Positives = 47/94 (50%) Frame = +2 Query: 236 LSLPMFSLQGFLLFPEAILTLRVTQPRFAAAVDKAINHVDNPCMIGVVHLYQHVNDGHHA 415 +++P+ L+ +++P ++ L V + + ++ ++++ D M+ Sbjct: 9 ITIPVLPLRDVVIYPHMVIPLFVGRQKSIKCIETSMSN-DKKIMLIAQKEASKDEPTPKD 67 Query: 416 IASVGTTAEILEVRRLDDGSSNVITRGQQRFRLR 517 + +GT + IL++ +L DG+ V+ G QR ++ Sbjct: 68 LFDIGTISAILQMLKLPDGTVKVLIEGLQRAHIK 101
>VP40_HCMVA (P16753) Capsid protein P40 [Contains: Assemblin (Protease) (EC| 3.4.21.97); Capsid assembly protein; Gene UL80 protein; Gene UL80.5 protein; C-terminal peptide] Length = 708 Score = 32.7 bits (73), Expect = 0.69 Identities = 21/63 (33%), Positives = 32/63 (50%) Frame = +2 Query: 308 QPRFAAAVDKAINHVDNPCMIGVVHLYQHVNDGHHAIASVGTTAEILEVRRLDDGSSNVI 487 QP + A+ INH D+ ++G V Q V DG + V T+ LE+ R S ++ Sbjct: 50 QPSLSVALPLNINH-DDTAVVGHVAAMQSVRDGLFCLGCV-TSPRFLEIVRRASEKSELV 107 Query: 488 TRG 496 +RG Sbjct: 108 SRG 110
>LON_CAUCR (P52977) ATP-dependent protease La (EC 3.4.21.53)| Length = 799 Score = 32.0 bits (71), Expect = 1.2 Identities = 20/89 (22%), Positives = 43/89 (48%) Frame = +2 Query: 239 SLPMFSLQGFLLFPEAILTLRVTQPRFAAAVDKAINHVDNPCMIGVVHLYQHVNDGHHAI 418 +LP+ L+ ++FP ++ L V + + A+++ + D ++ + I Sbjct: 6 TLPVLPLRDIVVFPHMVVPLFVGRDKSVRALEEVMRG-DKQILLVTQKNSADDDPAPGDI 64 Query: 419 ASVGTTAEILEVRRLDDGSSNVITRGQQR 505 VG A +L++ +L DG+ V+ G+ R Sbjct: 65 FEVGVLATVLQLLKLPDGTVKVLVEGKAR 93
>LON_RICPR (Q9ZD92) ATP-dependent protease La (EC 3.4.21.53)| Length = 784 Score = 32.0 bits (71), Expect = 1.2 Identities = 19/95 (20%), Positives = 45/95 (47%), Gaps = 3/95 (3%) Frame = +2 Query: 239 SLPMFSLQGFLLFPEAILTLRVTQPRFAAAVDKAINHVDNPCMIGVVHL---YQHVNDGH 409 SLP+ +L+ ++FP I + V + + A+ + +N +V L + N Sbjct: 5 SLPLMALRDMVVFPGVIAPIFVGRKKSLQALSRTTISEENNSKYILVTLQKKFDQENPSK 64 Query: 410 HAIASVGTTAEILEVRRLDDGSSNVITRGQQRFRL 514 H + + A+I+++ +L + ++ ++ R +L Sbjct: 65 HELYNTAILAKIIQIVKLPNNTAKILIEAVARVKL 99
>CAD3_CAEEL (P34616) Cadherin-3 precursor| Length = 3343 Score = 30.4 bits (67), Expect = 3.4 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 10/127 (7%) Frame = +2 Query: 140 FTFNTSR-ASLNTYVGE---------VDDARDRFAFLNGGAVLSLPMFSLQGFLLFPEAI 289 +TF T + SL T +G +D + F +G + + S F+ P + Sbjct: 551 YTFTTWQDVSLGTVIGRLPKAQIYSTIDTVSELGVFPDGSVFVGKTITS--DFVTLPVTL 608 Query: 290 LTLRVTQPRFAAAVDKAINHVDNPCMIGVVHLYQHVNDGHHAIASVGTTAEILEVRRLDD 469 + TQ + K +N C I +H+ ++ A +GT ++ R D Sbjct: 609 VNRNTTQTSIITLIVKPLNQHSPICQITEIHVLEN--------APIGTIFGRIQARDEDS 660 Query: 470 GSSNVIT 490 G S V++ Sbjct: 661 GLSGVVS 667
>LON_TREPA (O83536) ATP-dependent protease La (EC 3.4.21.53)| Length = 881 Score = 30.0 bits (66), Expect = 4.5 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 425 VGTTAEILEVRRLDDGSSNVITRGQQRFRLRR 520 VG+ A I++ L DG NV Q+RFR+R+ Sbjct: 153 VGSVARIVKKINLPDGGLNVFISTQKRFRIRK 184
>NUC_STAIN (P43269) Thermonuclease precursor (EC 3.1.31.1) (TNase)| (Micrococcal nuclease) (Staphylococcal nuclease) Length = 168 Score = 28.9 bits (63), Expect = 10.0 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = +2 Query: 374 VVHLYQHVN-DGHHAIASVGTTAEILEVRRLDDGSSNVITRGQQRFRLRRSWVDIDE 541 VV ++Q++N DG +S E V+R+ DG + +I + Q R+R VD E Sbjct: 16 VVLIFQYINGDGPFKKSSTDVRGESYLVKRVIDGDTIIIDKDGQDERVRLIGVDTPE 72
>GCP_RAT (Q9WVS2) Probable O-sialoglycoprotein endopeptidase (EC 3.4.24.57)| (Pasteurella haemolytica metalloprotease homolog with glycoprotein substrates/gpc-like protein 1) (Prsmg1/Gcpl1) (Fragment) Length = 322 Score = 28.9 bits (63), Expect = 10.0 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = +2 Query: 323 AAVDKAINHVDNPCMIGVVHLYQHVNDGHHAIASVGTTAEILEVRRLDDGSSNVITRGQQ 502 A V + + + N ++GV H H+ G +V T V + G++ VI+ + Sbjct: 90 AVVARTVAQLWNKPLLGVNHCIGHIEMGRLITGAVNPT-----VLYVSGGNTQVISYSEH 144 Query: 503 RFRLRRSWVDI 535 R+R+ +DI Sbjct: 145 RYRIFGETIDI 155
>GCP_MOUSE (Q8BWU5) Probable O-sialoglycoprotein endopeptidase (EC 3.4.24.57)| (mOsgep) Length = 335 Score = 28.9 bits (63), Expect = 10.0 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = +2 Query: 323 AAVDKAINHVDNPCMIGVVHLYQHVNDGHHAIASVGTTAEILEVRRLDDGSSNVITRGQQ 502 A V + + + N ++GV H H+ G +V T V + G++ VI+ + Sbjct: 90 AVVARTVAQLWNKPLLGVNHCIGHIEMGRLITGAVNPT-----VLYVSGGNTQVISYSEH 144 Query: 503 RFRLRRSWVDI 535 R+R+ +DI Sbjct: 145 RYRIFGETIDI 155
>PAR2_HUMAN (P55085) Proteinase-activated receptor 2 precursor (PAR-2)| (Thrombin receptor-like 1) (Coagulation factor II receptor-like 1) (G-protein coupled receptor 11) Length = 397 Score = 28.9 bits (63), Expect = 10.0 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Frame = -1 Query: 433 CAN*SNSMVSIIYVLVE---MNHTYHAWIINMINSLINSCCKSRLSYSKSQDSFRKQQKS 263 C SN ++ + Y L++ +H Y +I+ + S +NSC + Y S D FR K+ Sbjct: 299 CFTPSNLLLVVHYFLIKSQGQSHVYALYIVALCLSTLNSCIDPFVYYFVSHD-FRDHAKN 357
>LEU2_THEFY (Q47SA3) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 465 Score = 28.9 bits (63), Expect = 10.0 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 7/87 (8%) Frame = +2 Query: 305 TQPRFAAAVDKAINHVD-------NPCMIGVVHLYQHVNDGHHAIASVGTTAEILEVRRL 463 T P AA +KA+ ++D I V L N I + AE+L+ R++ Sbjct: 311 TDPVERAAAEKALAYMDLKPGTRMRDIKIDTVFLGSCTNG---RIEDLRAAAEVLKGRKV 367 Query: 464 DDGSSNVITRGQQRFRLRRSWVDIDEV 544 DG ++ G QR + + + +DE+ Sbjct: 368 ADGVRMLVVPGSQRVKQQAAAEGLDEI 394 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,637,063 Number of Sequences: 219361 Number of extensions: 1090639 Number of successful extensions: 3368 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3205 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3353 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
