ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd17b07 |
|---|---|
| Clone Library Name | barley_pub |
>128UP_DROME (P32234) GTP-binding protein 128up| Length = 368 Score = 72.0 bits (175), Expect = 1e-12 Identities = 30/49 (61%), Positives = 38/49 (77%) Frame = +2 Query: 146 TVEDFCNHIHRSLLKDVKYVLVWGTSARHYPQHCGLGHGLEDEDVVQIV 292 ++EDFCN +HRS+ K+ KY LVWG+S +H PQ G+ H L DEDVVQIV Sbjct: 317 SIEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKVGIEHVLNDEDVVQIV 365
>DRG1_MOUSE (P32233) Developmentally-regulated GTP-binding protein 1 (DRG 1)| (Protein NEDD3) (Neural precursor cell expressed developmentally down-regulated protein 3) Length = 367 Score = 70.9 bits (172), Expect = 3e-12 Identities = 31/49 (63%), Positives = 37/49 (75%) Frame = +2 Query: 146 TVEDFCNHIHRSLLKDVKYVLVWGTSARHYPQHCGLGHGLEDEDVVQIV 292 TVEDFC IH++L+K+ KY LVWG S +H PQ G H LEDEDV+QIV Sbjct: 317 TVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIV 365
>DRG1_HUMAN (Q9Y295) Developmentally-regulated GTP-binding protein 1 (DRG 1)| Length = 367 Score = 70.9 bits (172), Expect = 3e-12 Identities = 31/49 (63%), Positives = 37/49 (75%) Frame = +2 Query: 146 TVEDFCNHIHRSLLKDVKYVLVWGTSARHYPQHCGLGHGLEDEDVVQIV 292 TVEDFC IH++L+K+ KY LVWG S +H PQ G H LEDEDV+QIV Sbjct: 317 TVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIV 365
>DRG1_XENLA (P43690) Developmentally-regulated GTP-binding protein 1 (DRG 1)| (xDRG) Length = 367 Score = 68.6 bits (166), Expect = 1e-11 Identities = 29/47 (61%), Positives = 36/47 (76%) Frame = +2 Query: 152 EDFCNHIHRSLLKDVKYVLVWGTSARHYPQHCGLGHGLEDEDVVQIV 292 EDFC IH++L+K+ KY LVWG+S +H PQ G H LEDEDV+QIV Sbjct: 319 EDFCTKIHKNLIKEFKYALVWGSSVKHNPQKVGKDHVLEDEDVIQIV 365
>YAD6_YEAST (P39729) Hypothetical 40.7 kDa protein in PYK1-SNC1 intergenic| region Length = 369 Score = 67.8 bits (164), Expect = 3e-11 Identities = 29/50 (58%), Positives = 39/50 (78%) Frame = +2 Query: 143 CTVEDFCNHIHRSLLKDVKYVLVWGTSARHYPQHCGLGHGLEDEDVVQIV 292 C+V+DFCN IH+SL+ D + LV+G+S +H PQ+ GL H LEDEDVV I+ Sbjct: 318 CSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTIL 367
>DRG2_MOUSE (Q9QXB9) Developmentally-regulated GTP-binding protein 2 (DRG 2)| Length = 364 Score = 66.2 bits (160), Expect = 7e-11 Identities = 30/53 (56%), Positives = 36/53 (67%) Frame = +2 Query: 134 RGGCTVEDFCNHIHRSLLKDVKYVLVWGTSARHYPQHCGLGHGLEDEDVVQIV 292 R G +VE C+ IHRSL KY LVWGTS ++ PQ GL H +E EDV+QIV Sbjct: 310 RKGASVEHVCHRIHRSLASQFKYALVWGTSTKYSPQRVGLTHTMEHEDVIQIV 362
>DRG2_HUMAN (P55039) Developmentally-regulated GTP-binding protein 2 (DRG 2)| Length = 364 Score = 66.2 bits (160), Expect = 7e-11 Identities = 30/53 (56%), Positives = 36/53 (67%) Frame = +2 Query: 134 RGGCTVEDFCNHIHRSLLKDVKYVLVWGTSARHYPQHCGLGHGLEDEDVVQIV 292 R G +VE C+ IHRSL KY LVWGTS ++ PQ GL H +E EDV+QIV Sbjct: 310 RKGASVEHVCHRIHRSLASQFKYALVWGTSTKYSPQRVGLTHTMEHEDVIQIV 362
>YG3Y_YEAST (P53295) Hypothetical 41.0 kDa protein in YIP1-CBP4 intergenic| region Length = 368 Score = 65.1 bits (157), Expect = 2e-10 Identities = 27/52 (51%), Positives = 34/52 (65%) Frame = +2 Query: 134 RGGCTVEDFCNHIHRSLLKDVKYVLVWGTSARHYPQHCGLGHGLEDEDVVQI 289 R T+ D C+ IHR KY LVWG+SA+H PQ CGL H ++DEDVV + Sbjct: 314 RNNSTIGDLCHGIHRDFKDKFKYALVWGSSAKHSPQKCGLNHRIDDEDVVSL 365
>YKK3_CAEEL (P34280) Hypothetical GTP-binding protein C02F5.3 in chromosome III| Length = 366 Score = 64.7 bits (156), Expect = 2e-10 Identities = 27/53 (50%), Positives = 37/53 (69%) Frame = +2 Query: 134 RGGCTVEDFCNHIHRSLLKDVKYVLVWGTSARHYPQHCGLGHGLEDEDVVQIV 292 RGG T+E C+ +HRS+ ++Y +VWGTS + PQ GL H L+ EDV+QIV Sbjct: 312 RGGATIEHCCHALHRSIAAQLRYAIVWGTSTKFSPQRVGLHHKLDHEDVIQIV 364
>GTP1_SCHPO (P32235) GTP-binding protein 1| Length = 364 Score = 64.3 bits (155), Expect = 3e-10 Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 1/54 (1%) Frame = +2 Query: 134 RGGCTVEDFCNHIHRSLLKDVKYVLVWGTSARHYPQ-HCGLGHGLEDEDVVQIV 292 R G T+E CN IHR+L + +KY LVWGTSA+H PQ GL H +E+ DVV IV Sbjct: 309 RKGSTIEQVCNRIHRTLAEQLKYALVWGTSAKHSPQVVVGLNHRVEEGDVVTIV 362
>Y1326_METJA (Q58722) Hypothetical GTP-binding protein MJ1326| Length = 391 Score = 57.0 bits (136), Expect = 4e-08 Identities = 24/53 (45%), Positives = 34/53 (64%) Frame = +2 Query: 134 RGGCTVEDFCNHIHRSLLKDVKYVLVWGTSARHYPQHCGLGHGLEDEDVVQIV 292 R G TV+D C +H+ +++ +Y VWG SA+H Q GL H LED D++ IV Sbjct: 336 RRGATVKDVCEKLHKDFVRNFRYAQVWGKSAKHPGQRVGLDHKLEDGDILTIV 388
>YFY7_SCHPO (Q9UT21) Hypothetical protein C9.07c in chromosome I| Length = 366 Score = 55.1 bits (131), Expect = 2e-07 Identities = 27/52 (51%), Positives = 31/52 (59%) Frame = +2 Query: 137 GGCTVEDFCNHIHRSLLKDVKYVLVWGTSARHYPQHCGLGHGLEDEDVVQIV 292 G TVEDFCN+IH S+ K+ VWG S + GL H L DEDVV IV Sbjct: 313 GHSTVEDFCNNIHSSIKSQFKHAYVWGKSVPYPGMRVGLSHVLLDEDVVTIV 364
>Y1111_HALSA (P17103) Hypothetical GTP-binding protein Vng1111g| Length = 370 Score = 38.9 bits (89), Expect = 0.012 Identities = 21/53 (39%), Positives = 31/53 (58%) Frame = +2 Query: 134 RGGCTVEDFCNHIHRSLLKDVKYVLVWGTSARHYPQHCGLGHGLEDEDVVQIV 292 R G TV+D + +L + ++ V G SA+H Q G H LEDEDV+++V Sbjct: 315 RRGETVDDAVQKLGGTLDERFRFARVTGPSAQHDDQQVGRDHVLEDEDVLRVV 367
>SOK1_YEAST (P40317) Protein SOK1| Length = 901 Score = 30.4 bits (67), Expect = 4.4 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = -2 Query: 224 HSFPTQAHISHP*VSSYGCDCKNLQ-LCNHPYPDSFMPTQQYHNHQKKYYNTN 69 HS PT H S +SS+ +N L NHP P + NH + Y ++N Sbjct: 244 HSVPTILHSSLRKLSSHNQYYRNQNILLNHPTPSGISKKKFSRNHHQPYLHSN 296
>IBRD3_HUMAN (Q6ZMZ0) IBR domain-containing protein 3| Length = 486 Score = 29.6 bits (65), Expect = 7.6 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +1 Query: 361 LRQGQESSSQDMIPSPRRSLWAGFVPDGPTDLMMCRMLHCTAPFC 495 L GQES D+ P PR S + + DG + M C + C FC Sbjct: 171 LSYGQESGPDDIKPCPRCSAYIIKMNDGSCNHMTCAV--CGCEFC 213 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,462,064 Number of Sequences: 219361 Number of extensions: 2037024 Number of successful extensions: 5072 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4938 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5071 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
